Wall clock time and date at job start Tue Mar 31 2020 09:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86801 * 119.99959 * 2 1 4 4 H 1.48490 * 109.47020 * 269.99631 * 3 2 1 5 5 H 1.48496 * 109.47082 * 30.00181 * 3 2 1 6 6 H 1.48504 * 109.46925 * 149.99729 * 3 2 1 7 7 C 1.40006 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99875 * 197.69063 * 7 2 1 9 9 C 1.40943 * 120.00260 * 17.69072 * 7 2 1 10 10 C 1.40943 * 120.13877 * 24.97492 * 9 7 2 11 11 C 1.36195 * 119.90261 * 180.32261 * 10 9 7 12 12 C 1.40018 * 120.18636 * 359.67883 * 11 10 9 13 13 C 1.48005 * 119.86099 * 180.02562 * 12 11 10 14 14 C 1.40012 * 120.56047 * 129.98083 * 13 12 11 15 15 C 1.38341 * 118.29374 * 179.97438 * 14 13 12 16 16 C 1.38380 * 119.30474 * 359.97438 * 15 14 13 17 17 N 1.31930 * 121.08190 * 0.02562 * 16 15 14 18 18 C 1.31695 * 121.87263 * 359.69005 * 17 16 15 19 19 C 1.50698 * 119.71950 * 180.29166 * 18 17 16 20 20 F 1.39898 * 109.46741 * 270.28921 * 19 18 17 21 21 F 1.39907 * 109.47247 * 30.28166 * 19 18 17 22 22 F 1.39896 * 109.47556 * 150.28308 * 19 18 17 23 23 C 1.39772 * 120.27639 * 359.97438 * 12 11 10 24 24 C 1.36576 * 120.09753 * 0.02828 * 23 12 11 25 25 F 1.35103 * 120.09675 * 179.97438 * 24 23 12 26 26 H 0.97006 * 119.99677 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.05203 * 0.02651 * 10 9 7 28 28 H 1.07999 * 119.90695 * 179.70225 * 11 10 9 29 29 H 1.07994 * 120.85269 * 359.97438 * 14 13 12 30 30 H 1.08001 * 120.34687 * 180.02562 * 15 14 13 31 31 H 1.08000 * 119.45586 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.95608 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0463 -1.4000 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4402 0.7001 7 6 2.0081 -1.2125 0.0005 8 1 3.0498 -1.2345 0.2848 9 6 1.3534 -2.4044 -0.3698 10 6 0.2258 -2.3595 -1.2143 11 6 -0.4071 -3.5136 -1.5638 12 6 0.0632 -4.7452 -1.0921 13 6 -0.6298 -5.9951 -1.4769 14 6 0.0919 -7.0814 -1.9863 15 6 -0.6032 -8.2269 -2.3305 16 6 -1.9761 -8.2625 -2.1616 17 7 -2.6302 -7.2233 -1.6791 18 6 -2.0128 -6.1131 -1.3320 19 6 -2.8073 -4.9577 -0.7797 20 9 -3.2211 -4.1319 -1.8304 21 9 -3.9290 -5.4454 -0.1005 22 9 -2.0097 -4.2234 0.1043 23 6 1.1851 -4.7993 -0.2601 24 6 1.8285 -3.6489 0.0976 25 9 2.9126 -3.7012 0.9022 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1387 -1.4108 -1.5798 28 1 -1.2740 -3.4789 -2.2070 29 1 1.1636 -7.0264 -2.1074 30 1 -0.0796 -9.0846 -2.7262 31 1 -2.5212 -9.1557 -2.4291 32 1 1.5432 -5.7520 0.1011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242375346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:53 Heat of formation + Delta-G solvation = -138.084087 kcal Electronic energy + Delta-G solvation = -25639.862647 eV Core-core repulsion = 21257.739448 eV Total energy + Delta-G solvation = -4382.123200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.63707 -47.36919 -47.16942 -47.02948 -40.07017 -37.51353 -34.38069 -32.60119 -32.14514 -29.46913 -29.32185 -26.43848 -25.47851 -23.23940 -22.31404 -21.15943 -20.62429 -18.24402 -18.01539 -17.89870 -17.61659 -16.58591 -16.02984 -15.52221 -15.25479 -14.71721 -14.52923 -14.23952 -14.07498 -13.97745 -13.72947 -13.57348 -13.50928 -13.24450 -13.18120 -13.01773 -12.78970 -12.57941 -12.09786 -11.90115 -11.60137 -11.44028 -11.25501 -10.90338 -10.52998 -10.05600 -9.93680 -9.79088 -9.56884 -9.43704 -8.98484 -7.72660 -7.47445 -7.09322 -4.63923 0.88173 1.27788 2.43732 2.72840 2.92030 2.96697 2.97954 3.00453 3.69446 3.71015 3.99273 4.27087 4.41592 4.85134 4.89042 4.97259 5.07852 5.23025 5.27639 5.43510 5.66973 5.84429 6.00648 6.14423 6.19765 6.27271 6.64390 6.70980 6.83834 6.92658 7.27311 7.35272 7.67847 7.77963 7.84043 7.86173 8.27455 8.42490 8.58876 9.79991 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.004929 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.833790 B = 5679.800853 C = 6598.980401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.429 4.429 8 H 0.089 0.911 9 C 0.099 3.901 10 C -0.150 4.150 11 C -0.074 4.074 12 C -0.206 4.206 13 C 0.022 3.978 14 C -0.089 4.089 15 C -0.138 4.138 16 C 0.068 3.932 17 N -0.443 5.443 18 C 0.015 3.985 19 C 0.524 3.476 20 F -0.177 7.177 21 F -0.177 7.177 22 F -0.146 7.146 23 C -0.079 4.079 24 C -0.035 4.035 25 F -0.162 7.162 26 H 0.290 0.710 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -8.402 -4.121 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.095 3.905 10 C -0.170 4.170 11 C -0.093 4.093 12 C -0.208 4.208 13 C 0.019 3.981 14 C -0.115 4.115 15 C -0.158 4.158 16 C -0.091 4.091 17 N -0.151 5.151 18 C -0.124 4.124 19 C 0.468 3.532 20 F -0.158 7.158 21 F -0.159 7.159 22 F -0.127 7.127 23 C -0.098 4.098 24 C -0.055 4.055 25 F -0.142 7.142 26 H 0.101 0.899 27 H 0.145 0.855 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.114 -8.229 -3.939 9.640 hybrid contribution 1.176 0.822 0.148 1.442 sum -1.939 -7.407 -3.791 8.544 Atomic orbital electron populations 1.69809 1.07842 1.30428 1.30590 1.26089 0.94878 1.02029 0.91995 0.86119 0.80561 0.79418 0.79752 1.18786 1.19835 1.18158 1.19737 0.98596 0.91005 1.36293 0.89275 1.17745 0.92080 0.90941 0.89725 1.20760 0.98604 0.97198 1.00405 1.20666 0.98112 0.91931 0.98603 1.17490 1.01676 0.90102 1.11580 1.19582 0.91544 0.94821 0.92123 1.21814 1.01003 0.92038 0.96666 1.22219 0.95721 0.98710 0.99116 1.22563 0.91881 0.96225 0.98466 1.66996 1.40739 0.99124 1.08209 1.21105 0.91637 0.93977 1.05692 1.17801 0.77284 0.81825 0.76244 1.93158 1.90734 1.74092 1.57832 1.93166 1.54085 1.87916 1.80699 1.93385 1.72563 1.77878 1.68872 1.20076 0.95065 0.96000 0.98674 1.17281 0.91343 0.94620 1.02207 1.91290 1.53275 1.97288 1.72308 0.89908 0.85476 0.88245 0.83942 0.84391 0.82339 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.30 10.97 55.55 0.61 -17.69 16 2 C 0.07 1.68 5.13 -17.32 -0.09 1.59 16 3 Si 0.92 17.30 29.60 -169.99 -5.03 12.27 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.43 -10.76 8.76 -37.90 -0.33 -11.09 16 8 H 0.09 2.19 7.73 -52.48 -0.41 1.79 16 9 C 0.10 2.51 5.58 -106.73 -0.60 1.91 16 10 C -0.15 -3.64 8.62 -39.29 -0.34 -3.98 16 11 C -0.07 -1.65 6.93 -39.65 -0.27 -1.92 16 12 C -0.21 -4.30 4.00 -104.65 -0.42 -4.71 16 13 C 0.02 0.39 5.45 -104.74 -0.57 -0.18 16 14 C -0.09 -1.29 9.67 -38.88 -0.38 -1.67 16 15 C -0.14 -1.61 10.10 -39.49 -0.40 -2.01 16 16 C 0.07 0.87 11.17 -17.46 -0.20 0.67 16 17 N -0.44 -7.38 9.96 -9.13 -0.09 -7.48 16 18 C 0.01 0.27 6.30 -82.16 -0.52 -0.25 16 19 C 0.52 10.11 2.77 36.00 0.10 10.21 16 20 F -0.18 -3.38 15.29 2.25 0.03 -3.34 16 21 F -0.18 -3.31 17.04 2.25 0.04 -3.27 16 22 F -0.15 -3.14 13.16 2.25 0.03 -3.11 16 23 C -0.08 -1.70 9.43 -39.61 -0.37 -2.07 16 24 C -0.03 -0.83 7.26 -39.07 -0.28 -1.12 16 25 F -0.16 -3.91 16.69 2.25 0.04 -3.87 16 26 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 27 H 0.13 3.14 6.17 -52.49 -0.32 2.82 16 28 H 0.10 2.09 5.75 -52.49 -0.30 1.79 16 29 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.10 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -26.88 295.35 -6.44 -33.32 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -1.86 Total: 3.35 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -4.66 Total: -14.63 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.52 Total: -25.16 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 0.14 Total: -13.60 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.88 -6.44 -33.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242375346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.763 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds