Wall clock time and date at job start Tue Mar 31 2020 09:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48496 * 109.47215 * 270.00389 * 3 2 1 5 5 H 1.48497 * 109.47034 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46820 * 150.00406 * 3 2 1 7 7 C 1.40157 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.40745 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.33980 * 120.29175 * 355.86709 * 9 7 2 11 11 C 1.31605 * 119.90498 * 180.02562 * 10 9 7 12 12 C 1.39199 * 120.52017 * 359.97438 * 11 10 9 13 13 N 1.31997 * 120.59320 * 0.02562 * 12 11 10 14 14 C 1.32912 * 120.07850 * 0.02562 * 13 12 11 15 15 C 1.47662 * 120.25757 * 179.97438 * 14 13 12 16 16 C 1.40334 * 120.50701 * 225.69585 * 15 14 13 17 17 C 1.37960 * 118.35234 * 180.02562 * 16 15 14 18 18 C 1.39180 * 119.27628 * 0.02562 * 17 16 15 19 19 O 1.35554 * 119.51503 * 180.02562 * 18 17 16 20 20 C 1.42902 * 117.00170 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.47000 * 59.99839 * 20 19 18 22 22 F 1.39894 * 109.47273 * 179.97438 * 20 19 18 23 23 F 1.39901 * 109.47172 * 300.00153 * 20 19 18 24 24 N 1.32392 * 120.96711 * 359.97004 * 18 17 16 25 25 C 1.31682 * 121.80750 * 359.75486 * 24 18 17 26 26 H 0.97000 * 119.99673 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.74233 * 179.97438 * 11 10 9 28 28 H 1.07990 * 119.70511 * 180.02562 * 12 11 10 29 29 H 1.08006 * 120.82155 * 359.97438 * 16 15 14 30 30 H 1.08003 * 120.36153 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.69636 * 180.26360 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4885 2.0465 -1.4000 5 1 1.4386 2.6526 0.7001 6 1 3.5386 1.4400 0.7000 7 6 2.0078 -1.2138 -0.0005 8 1 3.0877 -1.2139 -0.0010 9 6 1.3040 -2.4327 -0.0005 10 7 -0.0332 -2.4410 0.0833 11 6 -0.6835 -3.5851 0.0832 12 6 0.0069 -4.7907 -0.0041 13 7 1.3241 -4.8059 -0.0876 14 6 2.0048 -3.6644 -0.0884 15 6 3.4785 -3.6769 -0.1811 16 6 4.2525 -2.8706 0.6675 17 6 5.6256 -2.9167 0.5423 18 6 6.1942 -3.7535 -0.4135 19 8 7.5429 -3.8030 -0.5403 20 6 8.0690 -4.6806 -1.5379 21 9 7.5869 -4.3000 -2.7949 22 9 9.4660 -4.6079 -1.5332 23 9 7.6689 -5.9926 -1.2628 24 7 5.4372 -4.5028 -1.1998 25 6 4.1233 -4.4944 -1.1115 26 1 -0.4850 0.8401 0.0004 27 1 -1.7614 -3.5887 0.1514 28 1 -0.5401 -5.7218 -0.0035 29 1 3.7848 -2.2292 1.3999 30 1 6.2525 -2.3094 1.1784 31 1 3.5390 -5.1226 -1.7674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242775422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:32 Heat of formation + Delta-G solvation = -117.011731 kcal Electronic energy + Delta-G solvation = -24906.921714 eV Core-core repulsion = 20545.632242 eV Total energy + Delta-G solvation = -4361.289472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.09995 -47.91298 -47.68404 -40.42928 -39.13745 -37.72115 -34.38512 -32.98592 -32.14891 -31.18856 -28.98556 -26.60443 -25.74568 -23.98676 -23.05156 -22.12579 -21.31251 -19.69859 -18.90238 -18.89500 -17.86862 -16.81036 -16.34595 -16.04683 -15.56961 -15.25161 -15.01069 -14.66000 -14.40432 -14.39127 -14.16376 -14.12323 -13.88762 -13.86791 -13.39718 -13.24758 -13.00576 -12.83125 -12.58302 -12.34503 -11.69645 -11.54357 -11.50211 -10.87679 -10.52863 -10.10237 -9.77627 -9.55347 -9.51155 -9.27904 -8.63172 -7.76960 -7.59743 -6.77715 -4.95342 1.24537 1.55709 1.65285 2.33841 2.78351 2.88469 2.90886 3.01554 3.08809 3.64522 4.00075 4.03411 4.30861 4.40915 4.44155 5.05812 5.25180 5.36293 5.43764 5.54449 5.77811 5.95594 5.97500 6.18364 6.33880 6.47629 6.55644 6.69254 6.75895 6.96519 7.10463 7.41399 7.75540 7.99114 8.13554 8.38235 8.97982 9.58046 9.84323 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.004444 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.671811 B = 6299.221860 C = 7652.724626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.403 4.403 8 H 0.100 0.900 9 C 0.222 3.778 10 N -0.450 5.450 11 C 0.094 3.906 12 C -0.113 4.113 13 N -0.407 5.407 14 C -0.040 4.040 15 C -0.026 4.026 16 C -0.037 4.037 17 C -0.160 4.160 18 C 0.271 3.729 19 O -0.311 6.311 20 C 0.613 3.387 21 F -0.161 7.161 22 F -0.145 7.145 23 F -0.161 7.161 24 N -0.525 5.525 25 C 0.145 3.855 26 H 0.282 0.718 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 -2.027 -0.083 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.165 4.165 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.432 4.432 8 H 0.118 0.882 9 C 0.097 3.903 10 N -0.166 5.166 11 C -0.079 4.079 12 C -0.275 4.275 13 N -0.119 5.119 14 C -0.186 4.186 15 C -0.030 4.030 16 C -0.064 4.064 17 C -0.181 4.181 18 C 0.094 3.906 19 O -0.227 6.227 20 C 0.522 3.478 21 F -0.143 7.143 22 F -0.126 7.126 23 F -0.143 7.143 24 N -0.246 5.246 25 C -0.012 4.012 26 H 0.093 0.907 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.161 0.839 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.426 -2.266 -0.597 9.713 hybrid contribution -0.108 0.939 0.248 0.977 sum 9.318 -1.327 -0.349 9.418 Atomic orbital electron populations 1.70051 1.07522 1.29055 1.24941 1.26239 0.95053 1.01734 0.93455 0.86242 0.80654 0.79951 0.79887 1.18901 1.19602 1.17834 1.19944 0.95261 0.89140 1.38863 0.88220 1.19184 0.89030 0.92120 0.89919 1.69580 1.07283 1.24901 1.14852 1.23604 1.00186 0.90265 0.93808 1.22589 0.90534 0.97977 1.16449 1.67682 1.08682 1.29490 1.06070 1.19762 0.90967 0.90554 1.17286 1.19269 0.92822 0.95762 0.95128 1.21756 0.91162 0.96327 0.97121 1.20847 0.95252 1.01764 1.00223 1.19330 0.80217 0.95986 0.95094 1.86495 1.21405 1.60962 1.53802 1.19173 0.75260 0.76424 0.76942 1.93297 1.88064 1.90858 1.42062 1.93258 1.27014 1.96156 1.96196 1.93292 1.90580 1.37179 1.93266 1.67120 1.08953 1.23004 1.25492 1.22522 0.86844 0.95955 0.95836 0.90682 0.84942 0.85120 0.82544 0.83926 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.49 11.49 55.56 0.64 -15.85 16 2 C 0.06 1.43 5.50 -17.31 -0.10 1.34 16 3 Si 0.91 16.44 29.56 -169.99 -5.03 11.41 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.25 -4.44 7.11 56.52 0.40 -4.04 16 7 C -0.40 -9.35 7.95 -37.92 -0.30 -9.65 16 8 H 0.10 2.12 4.78 -52.49 -0.25 1.87 16 9 C 0.22 5.44 6.54 -84.55 -0.55 4.88 16 10 N -0.45 -11.23 8.05 -10.72 -0.09 -11.32 16 11 C 0.09 2.04 11.22 -17.29 -0.19 1.85 16 12 C -0.11 -2.38 11.22 -17.12 -0.19 -2.58 16 13 N -0.41 -9.20 10.33 -8.99 -0.09 -9.30 16 14 C -0.04 -0.90 6.42 -82.12 -0.53 -1.43 16 15 C -0.03 -0.52 5.31 -104.74 -0.56 -1.08 16 16 C -0.04 -0.66 7.63 -38.90 -0.30 -0.96 16 17 C -0.16 -2.52 10.02 -39.33 -0.39 -2.92 16 18 C 0.27 4.61 7.19 -16.96 -0.12 4.49 16 19 O -0.31 -4.84 10.34 -18.36 -0.19 -5.03 16 20 C 0.61 8.93 3.50 101.05 0.35 9.28 16 21 F -0.16 -2.48 16.54 2.25 0.04 -2.44 16 22 F -0.14 -1.84 17.53 2.25 0.04 -1.80 16 23 F -0.16 -2.45 16.54 2.25 0.04 -2.42 16 24 N -0.53 -9.60 8.03 -12.92 -0.10 -9.71 16 25 C 0.15 2.75 10.86 -17.10 -0.19 2.56 16 26 H 0.28 5.99 8.29 -40.82 -0.34 5.66 16 27 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 28 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.16 2.67 6.83 -52.48 -0.36 2.31 16 30 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.16 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 295.23 15.07 4.45 4.45 Total: -1.00 -26.61 295.23 -4.79 -31.41 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -1.43 Total: 4.81 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -3.06 Total: 5.79 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.36 Total: -46.18 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.61 -4.79 -31.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242775422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.606 kcal (2) G-P(sol) polarization free energy of solvation -26.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds