Wall clock time and date at job start Tue Mar 31 2020 09:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86800 * 119.99527 * 2 1 4 4 H 1.48506 * 109.47275 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47163 * 120.00560 * 3 2 1 6 6 H 1.48499 * 109.47630 * 240.00203 * 3 2 1 7 7 C 1.40041 * 120.00609 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99817 * 358.89972 * 7 2 1 9 9 C 1.41320 * 120.00238 * 178.89873 * 7 2 1 10 10 C 1.40852 * 120.14264 * 181.07274 * 9 7 2 11 11 N 1.31869 * 119.96451 * 179.80057 * 10 9 7 12 12 C 1.32186 * 120.29506 * 0.45402 * 11 10 9 13 13 C 1.40046 * 120.29010 * 359.77467 * 12 11 10 14 14 C 1.48233 * 119.98854 * 179.97438 * 13 12 11 15 15 C 1.40007 * 120.47502 * 359.74605 * 14 13 12 16 16 C 1.38102 * 118.36920 * 179.73377 * 15 14 13 17 17 C 1.39057 * 119.24187 * 0.51908 * 16 15 14 18 18 O 1.35619 * 119.54398 * 179.76493 * 17 16 15 19 19 C 1.42903 * 116.99867 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.47255 * 59.99746 * 19 18 17 21 21 F 1.39897 * 109.47019 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.46914 * 300.00187 * 19 18 17 23 23 N 1.32314 * 120.90813 * 359.74644 * 17 16 15 24 24 C 1.31777 * 121.78170 * 359.97438 * 23 17 16 25 25 N 1.32572 * 120.02384 * 0.02562 * 13 12 11 26 26 H 0.97007 * 119.99920 * 174.60713 * 1 2 3 27 27 H 1.07995 * 120.01677 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.85668 * 179.75692 * 12 11 10 29 29 H 1.07993 * 120.81466 * 0.02562 * 15 14 13 30 30 H 1.08004 * 120.37764 * 180.23761 * 16 15 14 31 31 H 1.07999 * 119.67030 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 1.2761 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0949 1.6967 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 1.4678 -2.1480 0.0170 9 6 3.4206 -1.2127 -0.0241 10 6 4.1276 -2.4307 -0.0475 11 7 5.4461 -2.4266 -0.0734 12 6 6.1095 -1.2833 -0.0684 13 6 5.4183 -0.0656 -0.0404 14 6 6.1691 1.2125 -0.0345 15 6 7.5691 1.2138 -0.0513 16 6 8.2242 2.4295 -0.0506 17 6 7.4786 3.6029 -0.0223 18 8 8.1158 4.8001 -0.0166 19 6 7.2967 5.9708 0.0123 20 9 6.5076 5.9594 1.1674 21 9 8.1101 7.1090 0.0138 22 9 6.4706 5.9899 -1.1166 23 7 6.1561 3.5675 -0.0012 24 6 5.4921 2.4293 -0.0066 25 7 4.0928 -0.0556 -0.0182 26 1 -0.4850 -0.8364 -0.0790 27 1 3.5902 -3.3674 -0.0479 28 1 7.1894 -1.2883 -0.0858 29 1 8.1229 0.2868 -0.0693 30 1 9.3034 2.4683 -0.0672 31 1 4.4123 2.4401 0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242778113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:33 Heat of formation + Delta-G solvation = -146.963118 kcal Electronic energy + Delta-G solvation = -24943.513753 eV Core-core repulsion = 20580.925491 eV Total energy + Delta-G solvation = -4362.588262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.062 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.31941 -49.09601 -48.95797 -42.10704 -41.17613 -39.32149 -36.27209 -35.01780 -34.23777 -33.03514 -30.84926 -28.00026 -27.38883 -25.93060 -24.78293 -23.86370 -22.78174 -21.12242 -20.57009 -20.15078 -20.14388 -18.65147 -18.26947 -17.50321 -17.32306 -16.85356 -16.70918 -16.31676 -15.83273 -15.71614 -15.47864 -15.38789 -15.32585 -15.15210 -15.12070 -15.08108 -14.62386 -14.50051 -14.34253 -13.95793 -13.63219 -13.13015 -13.09674 -12.94579 -11.96260 -11.87875 -11.48100 -11.29722 -11.19144 -10.84435 -10.51007 -9.79752 -9.44021 -9.23437 -6.99203 -0.67805 -0.01945 0.31380 0.50003 0.75861 1.44410 1.55360 1.80497 1.87176 2.22365 2.33766 2.62522 2.67162 2.97380 3.00840 3.13157 3.45243 3.60503 3.71400 3.76101 3.93530 4.12663 4.30238 4.44071 4.57554 4.69008 4.90527 4.94758 5.05942 5.25623 5.36241 5.51206 5.82329 6.04110 6.36334 6.39216 6.87051 7.34015 7.81034 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.004635 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.568760 B = 6039.389160 C = 7404.380977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.020 3.980 3 Si 1.168 2.832 4 H -0.326 1.326 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.193 3.807 10 C -0.048 4.048 11 N -0.422 5.422 12 C -0.079 4.079 13 C 0.159 3.841 14 C -0.114 4.114 15 C -0.003 4.003 16 C -0.138 4.138 17 C 0.290 3.710 18 O -0.300 6.300 19 C 0.614 3.386 20 F -0.166 7.166 21 F -0.128 7.128 22 F -0.166 7.166 23 N -0.548 5.548 24 C 0.141 3.859 25 N -0.562 5.562 26 H 0.290 0.710 27 H 0.156 0.844 28 H 0.190 0.810 29 H 0.200 0.800 30 H 0.201 0.799 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.409 8.052 -0.205 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.200 4.200 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.217 4.217 11 N -0.133 5.133 12 C -0.236 4.236 13 C 0.016 3.984 14 C -0.118 4.118 15 C -0.028 4.028 16 C -0.157 4.157 17 C 0.113 3.887 18 O -0.214 6.214 19 C 0.524 3.476 20 F -0.148 7.148 21 F -0.109 7.109 22 F -0.148 7.148 23 N -0.269 5.269 24 C -0.014 4.014 25 N -0.286 5.286 26 H 0.101 0.899 27 H 0.173 0.827 28 H 0.207 0.793 29 H 0.217 0.783 30 H 0.218 0.782 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.871 10.425 -0.119 19.832 hybrid contribution -0.746 -2.226 -0.057 2.348 sum 16.125 8.199 -0.176 18.090 Atomic orbital electron populations 1.70631 1.08363 1.33455 1.30893 1.28278 0.95621 1.07434 0.88675 0.81888 0.69968 0.68864 0.78922 1.25916 1.21293 1.21181 1.20842 0.90627 0.96553 1.43084 0.89524 1.19504 0.94825 0.88893 0.90042 1.23353 0.90447 0.97936 1.09955 1.67837 1.08896 1.30164 1.06426 1.23271 1.01300 0.86441 1.12594 1.20520 0.89836 0.93716 0.94285 1.19606 0.95218 0.91584 1.05384 1.21990 0.90701 1.00016 0.90136 1.21423 1.03593 0.86854 1.03861 1.19972 0.88517 0.84312 0.95913 1.86547 1.34642 1.11750 1.88474 1.19158 0.74894 0.78733 0.74859 1.93304 1.74992 1.96128 1.50336 1.93310 1.73512 1.47739 1.96350 1.93305 1.72976 1.96133 1.52360 1.67191 1.08381 1.32191 1.19184 1.22776 1.00167 0.86148 0.92348 1.67062 1.08404 1.28690 1.24437 0.89880 0.82675 0.79293 0.78347 0.78152 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.82 13.65 21.84 0.30 -42.53 16 2 C 0.02 1.04 5.52 85.29 0.47 1.51 16 3 Si 1.17 56.20 22.21 68.60 1.52 57.72 16 4 H -0.33 -15.62 7.11 99.48 0.71 -14.91 16 5 H -0.28 -13.50 6.61 99.48 0.66 -12.84 16 6 H -0.28 -13.42 6.60 99.48 0.66 -12.77 16 7 C -0.48 -24.63 9.60 23.47 0.23 -24.41 16 8 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 9 C 0.19 9.41 6.42 40.24 0.26 9.67 16 10 C -0.05 -2.09 10.98 85.33 0.94 -1.16 16 11 N -0.42 -16.98 10.47 -192.03 -2.01 -18.99 16 12 C -0.08 -2.76 10.63 85.08 0.90 -1.85 16 13 C 0.16 6.24 6.74 42.13 0.28 6.52 16 14 C -0.11 -3.71 5.89 -19.94 -0.12 -3.83 16 15 C 0.00 -0.06 9.53 22.67 0.22 0.16 16 16 C -0.14 -2.51 10.03 22.43 0.22 -2.28 16 17 C 0.29 7.54 7.19 84.82 0.61 8.15 16 18 O -0.30 -7.01 10.35 -89.31 -0.92 -7.93 16 19 C 0.61 15.03 3.50 113.37 0.40 15.43 16 20 F -0.17 -4.53 16.54 44.97 0.74 -3.78 16 21 F -0.13 -2.63 17.53 44.97 0.79 -1.84 16 22 F -0.17 -4.53 16.54 44.97 0.74 -3.79 16 23 N -0.55 -18.29 8.04 -307.99 -2.48 -20.77 16 24 C 0.14 5.21 10.74 84.95 0.91 6.12 16 25 N -0.56 -26.49 4.32 -177.67 -0.77 -27.25 16 26 H 0.29 14.51 8.72 -92.70 -0.81 13.70 16 27 H 0.16 6.21 8.06 -2.91 -0.02 6.19 16 28 H 0.19 4.55 6.25 -2.91 -0.02 4.53 16 29 H 0.20 2.36 6.30 -2.91 -0.02 2.34 16 30 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.14 6.06 2.53 -2.91 -0.01 6.05 16 Total: -1.00 -61.06 284.70 4.34 -56.72 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: 1.10 Total: -1.61 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.32 Total: 14.05 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.96 Total: -109.54 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.92 Total: -7.93 kcal Atomic # 9 Polarization: -11.69 SS G_CDS: 2.28 Total: -9.42 kcal Atomic # 14 Polarization: 56.20 SS G_CDS: 1.52 Total: 57.72 kcal Total: -61.06 4.34 -56.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242778113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.240 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds