Wall clock time and date at job start Tue Mar 31 2020 09:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86805 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47061 * 274.98937 * 3 2 1 5 5 H 1.48508 * 109.46949 * 34.98682 * 3 2 1 6 6 H 1.48496 * 109.46802 * 154.98570 * 3 2 1 7 7 C 1.40116 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00513 * 186.34056 * 7 2 1 9 9 C 1.41025 * 119.99990 * 6.34160 * 7 2 1 10 10 N 1.33668 * 119.12830 * 173.61408 * 9 7 2 11 11 C 1.31559 * 120.83525 * 180.02562 * 10 9 7 12 12 C 1.40494 * 119.08734 * 359.97438 * 11 10 9 13 13 C 1.47838 * 120.79289 * 179.97438 * 12 11 10 14 14 C 1.40272 * 120.49905 * 179.97438 * 13 12 11 15 15 C 1.37986 * 118.35201 * 180.02562 * 14 13 12 16 16 C 1.39172 * 119.27477 * 0.02562 * 15 14 13 17 17 O 1.35579 * 119.52087 * 179.97438 * 16 15 14 18 18 C 1.42896 * 117.00306 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.46993 * 59.99805 * 18 17 16 20 20 F 1.39896 * 109.47489 * 180.02562 * 18 17 16 21 21 F 1.39905 * 109.47053 * 300.00050 * 18 17 16 22 22 N 1.32370 * 120.95950 * 359.97438 * 16 15 14 23 23 C 1.31710 * 121.80339 * 0.02562 * 22 16 15 24 24 C 1.40481 * 118.41058 * 0.25430 * 12 11 10 25 25 N 1.31566 * 119.09070 * 359.48699 * 24 12 11 26 26 H 0.97001 * 119.99870 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.45996 * 180.02562 * 11 10 9 28 28 H 1.07995 * 120.82394 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.35700 * 179.72974 * 15 14 13 30 30 H 1.07992 * 119.69563 * 180.02562 * 23 22 16 31 31 H 1.08001 * 120.46080 * 179.72019 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4121 0.5920 7 6 2.0074 -1.2134 -0.0005 8 1 3.0825 -1.2164 0.1027 9 6 1.3088 -2.4310 -0.1360 10 7 2.0008 -3.5674 -0.2637 11 6 1.3834 -4.7220 -0.3927 12 6 -0.0213 -4.7489 -0.3944 13 6 -0.7537 -6.0252 -0.5375 14 6 -2.1562 -6.0450 -0.5378 15 6 -2.7944 -7.2608 -0.6736 16 6 -2.0328 -8.4183 -0.8043 17 8 -2.6546 -9.6157 -0.9376 18 6 -1.8208 -10.7688 -1.0685 19 9 -1.0112 -10.8899 0.0659 20 9 -2.6198 -11.9100 -1.1958 21 9 -1.0151 -10.6351 -2.2044 22 7 -0.7101 -8.3672 -0.8004 23 6 -0.0598 -7.2289 -0.6733 24 6 -0.7133 -3.5334 -0.2628 25 7 -0.0278 -2.4180 -0.1328 26 1 -0.4850 0.8401 0.0004 27 1 1.9485 -5.6366 -0.4951 28 1 -2.7226 -5.1313 -0.4342 29 1 -3.8731 -7.3141 -0.6737 30 1 1.0201 -7.2266 -0.6749 31 1 -1.7931 -3.5152 -0.2644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242779377.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:35 Heat of formation + Delta-G solvation = -116.810063 kcal Electronic energy + Delta-G solvation = -24133.209170 eV Core-core repulsion = 19771.928443 eV Total energy + Delta-G solvation = -4361.280727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.062 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.17985 -47.99212 -47.76829 -40.51675 -39.14791 -37.85591 -34.28524 -32.88906 -32.03418 -31.71817 -29.14892 -26.68792 -25.68531 -24.14000 -23.22668 -22.19096 -21.30833 -19.74401 -18.99521 -18.97703 -18.21652 -16.97807 -16.46083 -15.77339 -15.57111 -15.35245 -15.02651 -14.76176 -14.71925 -14.49134 -14.24822 -14.05160 -13.95678 -13.92951 -13.36379 -13.34779 -13.11247 -12.88812 -12.52336 -12.45745 -12.02203 -11.54131 -11.51141 -11.01727 -10.51123 -10.10753 -9.75956 -9.69063 -9.44248 -9.33896 -9.07607 -7.60058 -7.57358 -6.88659 -5.00126 1.01661 1.36961 1.57860 2.44753 2.76133 2.87844 2.92725 2.93909 3.00985 3.63866 3.90015 3.94763 4.20960 4.32219 4.41392 4.99865 5.10570 5.14994 5.36075 5.52401 5.61808 5.66430 5.75641 6.01579 6.10095 6.28457 6.36456 6.63075 6.77146 6.94577 7.05917 7.32852 7.83186 7.88702 8.14455 8.22576 8.79726 9.76074 9.95131 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.048116 B = 0.002613 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.790498 B =10712.725045 C =11114.587731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.057 3.943 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.363 4.363 8 H 0.100 0.900 9 C 0.375 3.625 10 N -0.589 5.589 11 C 0.194 3.806 12 C -0.334 4.334 13 C -0.015 4.015 14 C -0.079 4.079 15 C -0.140 4.140 16 C 0.246 3.754 17 O -0.312 6.312 18 C 0.613 3.387 19 F -0.162 7.162 20 F -0.145 7.145 21 F -0.162 7.162 22 N -0.511 5.511 23 C 0.106 3.894 24 C 0.187 3.813 25 N -0.507 5.507 26 H 0.282 0.718 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -10.633 -1.269 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.173 4.173 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.395 4.395 8 H 0.118 0.882 9 C 0.144 3.856 10 N -0.307 5.307 11 C 0.017 3.983 12 C -0.345 4.345 13 C -0.020 4.020 14 C -0.105 4.105 15 C -0.161 4.161 16 C 0.070 3.930 17 O -0.227 6.227 18 C 0.522 3.478 19 F -0.144 7.144 20 F -0.126 7.126 21 F -0.144 7.144 22 N -0.230 5.230 23 C -0.052 4.052 24 C 0.008 3.992 25 N -0.223 5.223 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.179 0.821 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.698 -10.262 -1.228 11.353 hybrid contribution -0.562 0.122 -0.090 0.582 sum -5.260 -10.140 -1.318 11.499 Atomic orbital electron populations 1.70113 1.07580 1.29122 1.24051 1.26291 0.95205 1.02030 0.93741 0.86002 0.80521 0.79151 0.79568 1.18953 1.19608 1.17915 1.19623 0.95737 0.88013 1.36086 0.88199 1.19956 0.85912 0.90902 0.88827 1.68670 1.40676 0.98741 1.22582 1.22697 0.90360 0.95851 0.89372 1.19495 0.95243 0.92744 1.27008 1.19652 0.92978 0.93983 0.95342 1.21451 0.93902 0.97036 0.98123 1.20811 1.00837 0.89389 1.05031 1.19188 0.88987 0.82710 1.02108 1.86483 1.34827 1.13038 1.88400 1.19162 0.74919 0.78514 0.75183 1.93291 1.73685 1.95701 1.51673 1.93261 1.74881 1.48615 1.95856 1.93293 1.73916 1.95459 1.51697 1.67038 1.07172 1.32080 1.16733 1.22397 0.99772 0.85333 0.97691 1.23039 0.99062 0.87853 0.89204 1.69356 1.08295 1.26465 1.18169 0.90645 0.84826 0.83699 0.84165 0.82066 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.39 11.43 55.55 0.63 -15.75 16 2 C 0.06 1.30 5.49 -17.34 -0.10 1.21 16 3 Si 0.93 16.67 29.57 -169.99 -5.03 11.65 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 7 C -0.36 -9.04 9.34 -37.82 -0.35 -9.39 16 8 H 0.10 2.38 7.86 -52.49 -0.41 1.96 16 9 C 0.37 9.70 7.35 -158.15 -1.16 8.54 16 10 N -0.59 -14.31 10.34 -12.40 -0.13 -14.44 16 11 C 0.19 4.01 10.71 -16.82 -0.18 3.83 16 12 C -0.33 -6.57 5.94 -104.28 -0.62 -7.19 16 13 C -0.02 -0.26 5.90 -104.70 -0.62 -0.87 16 14 C -0.08 -1.14 9.55 -38.91 -0.37 -1.51 16 15 C -0.14 -1.89 10.02 -39.33 -0.39 -2.29 16 16 C 0.25 3.76 7.19 -16.97 -0.12 3.64 16 17 O -0.31 -4.45 10.35 -18.43 -0.19 -4.64 16 18 C 0.61 8.25 3.50 101.05 0.35 8.60 16 19 F -0.16 -2.29 16.54 2.25 0.04 -2.25 16 20 F -0.14 -1.72 17.53 2.25 0.04 -1.68 16 21 F -0.16 -2.29 16.54 2.25 0.04 -2.25 16 22 N -0.51 -8.29 8.03 -12.93 -0.10 -8.39 16 23 C 0.11 1.68 10.63 -17.10 -0.18 1.50 16 24 C 0.19 3.98 10.71 -16.82 -0.18 3.80 16 25 N -0.51 -12.76 7.85 -12.41 -0.10 -12.86 16 26 H 0.28 5.95 8.29 -40.82 -0.34 5.61 16 27 H 0.13 2.27 6.35 -52.49 -0.33 1.94 16 28 H 0.15 1.82 6.40 -52.49 -0.34 1.48 16 29 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.16 2.28 6.30 -52.49 -0.33 1.95 16 31 H 0.13 2.38 6.40 -52.49 -0.34 2.04 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -27.51 295.48 -5.57 -33.08 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -1.30 Total: 3.22 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -3.92 Total: 9.86 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.31 Total: -51.44 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.11 Total: -6.18 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.51 -5.57 -33.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242779377.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.728 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds