Wall clock time and date at job start Tue Mar 31 2020 09:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 119.99931 * 2 1 4 4 H 1.48499 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47247 * 300.00644 * 3 2 1 6 6 H 1.48503 * 109.46866 * 60.00444 * 3 2 1 7 7 C 1.39932 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99656 * 197.92247 * 7 2 1 9 9 C 1.41419 * 120.00400 * 17.91438 * 7 2 1 10 10 C 1.40785 * 120.18348 * 24.47714 * 9 7 2 11 11 C 1.37682 * 119.99245 * 180.02562 * 10 9 7 12 12 C 1.38432 * 120.38044 * 0.02562 * 11 10 9 13 13 C 1.39683 * 120.37994 * 0.02562 * 12 11 10 14 14 C 1.48395 * 120.00296 * 179.97438 * 13 12 11 15 15 C 1.39660 * 120.89325 * 180.02562 * 14 13 12 16 16 C 1.38295 * 119.00134 * 179.97438 * 15 14 13 17 17 F 1.35105 * 119.59404 * 180.02562 * 16 15 14 18 18 N 1.32111 * 120.81652 * 359.97438 * 16 15 14 19 19 C 1.31957 * 121.96499 * 0.02562 * 18 16 15 20 20 C 1.50696 * 119.54090 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.47400 * 4.99722 * 20 19 18 22 22 F 1.39905 * 109.47063 * 124.99892 * 20 19 18 23 23 F 1.39901 * 109.46903 * 244.99681 * 20 19 18 24 24 C 1.37926 * 120.91146 * 359.73605 * 19 18 16 25 25 C 1.38779 * 119.99698 * 359.97438 * 13 12 11 26 26 H 0.96994 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00566 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.81201 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.81083 * 180.02562 * 12 11 10 30 30 H 1.08004 * 120.49559 * 359.95539 * 15 14 13 31 31 H 1.08005 * 120.45768 * 180.26660 * 24 19 18 32 32 H 1.08002 * 120.18987 * 179.71861 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2346 0.2873 9 6 1.3524 -2.4068 -0.3778 10 6 0.2226 -2.3599 -1.2165 11 6 -0.4129 -3.5256 -1.5808 12 6 0.0520 -4.7479 -1.1267 13 6 1.1709 -4.8126 -0.2931 14 6 1.6618 -6.1273 0.1893 15 6 2.7783 -6.2136 1.0237 16 6 3.2017 -7.4591 1.4506 17 9 4.2802 -7.5564 2.2585 18 7 2.5641 -8.5548 1.0789 19 6 1.5058 -8.5141 0.2917 20 6 0.8197 -9.7981 -0.0978 21 9 1.4115 -10.8680 0.5822 22 9 -0.5359 -9.7235 0.2399 23 9 0.9466 -9.9947 -1.4771 24 6 1.0153 -7.3123 -0.1746 25 6 1.8236 -3.6474 0.0840 26 1 -0.4850 0.8400 0.0004 27 1 -0.1461 -1.4095 -1.5733 28 1 -1.2797 -3.4862 -2.2240 29 1 -0.4534 -5.6566 -1.4186 30 1 3.3034 -5.3212 1.3308 31 1 0.1460 -7.2873 -0.8151 32 1 2.6863 -3.6935 0.7321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243910849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:17 Heat of formation + Delta-G solvation = -141.296321 kcal Electronic energy + Delta-G solvation = -24259.117168 eV Core-core repulsion = 19876.854676 eV Total energy + Delta-G solvation = -4382.262493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.22993 -49.05835 -47.76302 -47.67322 -40.32783 -37.77227 -34.40953 -32.99509 -31.90896 -30.16487 -28.95296 -26.85836 -25.44917 -23.77155 -23.08924 -20.82505 -20.71055 -18.77705 -18.62228 -18.57312 -17.48700 -16.84056 -16.58388 -16.21825 -16.11832 -15.41515 -14.67853 -14.63944 -14.49213 -14.17877 -14.13630 -13.84088 -13.83187 -13.76159 -13.39842 -13.30900 -13.10457 -12.74794 -12.43156 -12.13830 -11.98871 -11.53366 -11.27653 -10.95051 -10.65199 -10.16092 -10.05960 -9.90955 -9.69335 -9.33876 -9.28129 -7.79806 -7.51958 -6.98330 -4.60497 0.52437 0.75774 2.27895 2.54425 2.61351 2.96720 2.99953 3.02727 3.23749 3.48155 3.62559 3.78019 4.04437 4.28044 4.41941 4.54523 4.73969 4.89680 5.10388 5.39706 5.42347 5.67007 5.92026 6.05899 6.11529 6.40129 6.61419 6.76996 6.92271 7.02234 7.20833 7.25648 7.46675 7.70064 7.75507 7.95285 8.34230 8.62853 8.65314 9.96843 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.003374 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.421847 B = 8296.477968 C = 9300.348525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.104 3.896 10 C -0.140 4.140 11 C -0.108 4.108 12 C -0.208 4.208 13 C -0.060 4.060 14 C 0.071 3.929 15 C -0.169 4.169 16 C 0.317 3.683 17 F -0.107 7.107 18 N -0.498 5.498 19 C 0.069 3.931 20 C 0.526 3.474 21 F -0.163 7.163 22 F -0.169 7.169 23 F -0.170 7.170 24 C -0.136 4.136 25 C -0.191 4.191 26 H 0.283 0.717 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 -9.889 -0.630 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.160 4.160 11 C -0.126 4.126 12 C -0.227 4.227 13 C -0.060 4.060 14 C 0.063 3.937 15 C -0.190 4.190 16 C 0.163 3.837 17 F -0.086 7.086 18 N -0.213 5.213 19 C -0.069 4.069 20 C 0.471 3.529 21 F -0.144 7.144 22 F -0.150 7.150 23 F -0.151 7.151 24 C -0.156 4.156 25 C -0.211 4.211 26 H 0.094 0.906 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.180 0.820 31 H 0.173 0.827 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.031 -10.574 -0.279 10.628 hybrid contribution 0.129 1.277 -0.050 1.285 sum 1.161 -9.296 -0.329 9.374 Atomic orbital electron populations 1.69793 1.07666 1.29590 1.34431 1.25925 0.94753 1.01554 0.92003 0.86232 0.81030 0.80648 0.78741 1.18255 1.19556 1.19847 1.19625 0.98326 0.91077 1.39925 0.90046 1.17545 0.91390 0.91821 0.89078 1.21563 0.98324 0.97207 0.98901 1.20664 0.99019 0.92857 1.00059 1.20428 0.99631 0.96815 1.05860 1.18050 0.97934 0.88945 1.01089 1.19357 0.90373 0.94009 0.89941 1.22201 0.99006 0.97693 1.00072 1.17671 0.85632 0.88972 0.91430 1.91645 1.50639 1.96745 1.69598 1.66210 1.08582 1.32738 1.13766 1.20306 0.94844 0.92653 0.99050 1.17790 0.76651 0.83539 0.74958 1.93229 1.83575 1.57956 1.79656 1.93242 1.33241 1.96407 1.92141 1.93240 1.95693 1.95557 1.30603 1.21938 1.01800 0.90803 1.01097 1.21092 1.02966 0.91804 1.05188 0.90578 0.85927 0.88535 0.88616 0.82047 0.82702 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.75 10.96 55.55 0.61 -18.14 16 2 C 0.08 1.75 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.20 29.60 -169.99 -5.03 12.17 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.07 9.05 -37.74 -0.34 -11.41 16 8 H 0.08 1.88 7.91 -52.48 -0.42 1.46 16 9 C 0.10 2.48 5.57 -106.87 -0.60 1.88 16 10 C -0.14 -3.26 8.69 -38.82 -0.34 -3.60 16 11 C -0.11 -2.21 10.01 -39.71 -0.40 -2.61 16 12 C -0.21 -4.00 9.46 -38.97 -0.37 -4.36 16 13 C -0.06 -1.16 5.87 -104.97 -0.62 -1.78 16 14 C 0.07 1.17 5.91 -104.60 -0.62 0.55 16 15 C -0.17 -2.60 9.47 -39.03 -0.37 -2.97 16 16 C 0.32 4.89 8.40 -17.41 -0.15 4.75 16 17 F -0.11 -1.59 17.29 2.25 0.04 -1.55 16 18 N -0.50 -7.99 9.73 -9.90 -0.10 -8.09 16 19 C 0.07 1.03 6.26 -82.65 -0.52 0.51 16 20 C 0.53 7.06 3.31 36.00 0.12 7.18 16 21 F -0.16 -2.29 16.85 2.25 0.04 -2.25 16 22 F -0.17 -2.18 17.15 2.25 0.04 -2.14 16 23 F -0.17 -2.19 17.28 2.25 0.04 -2.15 16 24 C -0.14 -2.02 8.98 -39.11 -0.35 -2.37 16 25 C -0.19 -4.07 9.19 -38.53 -0.35 -4.42 16 26 H 0.28 6.09 8.30 -40.82 -0.34 5.76 16 27 H 0.12 2.95 6.15 -52.49 -0.32 2.63 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.57 6.27 -52.49 -0.33 1.24 16 30 H 0.16 2.28 6.33 -52.48 -0.33 1.95 16 31 H 0.16 2.04 6.32 -52.48 -0.33 1.70 16 32 H 0.10 1.97 6.28 -52.49 -0.33 1.64 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -24.30 301.10 -6.43 -30.72 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -1.62 Total: 3.85 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -4.98 Total: -16.97 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.51 Total: -26.23 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.15 Total: -8.08 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -24.30 -6.43 -30.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243910849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.573 kcal (2) G-P(sol) polarization free energy of solvation -24.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds