Wall clock time and date at job start Tue Mar 31 2020 09:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38314 * 119.96617 * 2 1 4 4 C 1.38258 * 120.15575 * 180.02562 * 3 2 1 5 5 C 1.38148 * 120.08807 * 359.97438 * 4 3 2 6 6 C 1.38853 * 119.93835 * 359.74465 * 5 4 3 7 7 N 1.39731 * 120.08188 * 180.25305 * 6 5 4 8 8 C 1.46504 * 119.99498 * 0.25811 * 7 6 5 9 9 C 1.52996 * 109.46597 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47796 * 54.99474 * 9 8 7 11 11 C 1.53007 * 109.47199 * 294.99514 * 9 8 7 12 12 C 1.53001 * 109.47367 * 175.00072 * 9 8 7 13 13 C 1.50688 * 109.47551 * 184.99869 * 12 9 8 14 14 H 1.08008 * 120.00148 * 359.97438 * 13 12 9 15 15 C 1.37884 * 120.00096 * 179.97438 * 13 12 9 16 16 N 1.31511 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47034 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47285 * 119.99771 * 17 15 13 20 20 H 1.48495 * 109.47065 * 240.00125 * 17 15 13 21 21 C 1.38157 * 119.97106 * 180.02562 * 2 1 3 22 22 Br 1.89100 * 120.04195 * 359.95703 * 21 2 1 23 23 H 1.08996 * 109.47247 * 269.97670 * 1 2 3 24 24 H 1.09000 * 109.47190 * 29.98310 * 1 2 3 25 25 H 1.09007 * 109.46913 * 149.98132 * 1 2 3 26 26 H 1.08001 * 119.92154 * 0.04421 * 3 2 1 27 27 H 1.07997 * 119.95492 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.03304 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00112 * 180.25523 * 7 6 5 30 30 H 1.09002 * 109.46975 * 299.99611 * 8 7 6 31 31 H 1.08991 * 109.46995 * 59.99912 * 8 7 6 32 32 H 1.09001 * 109.47362 * 179.97438 * 11 9 8 33 33 H 1.08994 * 109.47118 * 300.00564 * 11 9 8 34 34 H 1.09005 * 109.46532 * 60.00000 * 11 9 8 35 35 H 1.09001 * 109.46583 * 304.99810 * 12 9 8 36 36 H 1.09000 * 109.47057 * 64.98957 * 12 9 8 37 37 H 0.96999 * 119.99608 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2769 0.0098 -0.0005 6 6 3.5872 -1.1953 0.0054 7 7 4.2887 -2.4038 0.0107 8 6 5.7537 -2.4002 0.0158 9 6 6.2671 -3.8414 0.0204 10 1 5.8367 -4.3833 -0.8217 11 6 5.8595 -4.5239 1.3278 12 6 7.7924 -3.8400 -0.0999 13 6 8.2883 -5.2579 -0.2189 14 1 7.5859 -6.0783 -0.2092 15 6 9.6388 -5.5081 -0.3402 16 7 10.4941 -4.5091 -0.3525 17 14 10.2537 -7.2659 -0.4870 18 1 9.0992 -8.1991 -0.4465 19 1 10.9793 -7.4309 -1.7720 20 1 11.1711 -7.5652 0.6416 21 6 2.1971 -1.1968 -0.0005 22 35 1.2520 -2.8347 0.0000 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8899 -0.5142 26 1 1.6560 2.1325 0.0007 27 1 4.1165 2.1403 -0.0010 28 1 5.3569 0.0144 -0.0005 29 1 3.8057 -3.2449 0.0111 30 1 6.1189 -1.8876 -0.8742 31 1 6.1127 -1.8833 0.9058 32 1 6.2248 -5.5508 1.3309 33 1 6.2899 -3.9821 2.1700 34 1 4.7728 -4.5249 1.4136 35 1 8.0863 -3.2767 -0.9857 36 1 8.2263 -3.3763 0.7860 37 1 11.4441 -4.6851 -0.4382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308708476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:05 Heat of formation + Delta-G solvation = 1.565994 kcal Electronic energy + Delta-G solvation = -17467.289302 eV Core-core repulsion = 14675.511388 eV Total energy + Delta-G solvation = -2791.777913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63387 -36.88542 -34.30623 -32.91134 -32.24016 -30.57806 -28.68907 -26.98523 -26.82558 -25.65301 -22.97624 -22.11730 -20.58976 -19.32564 -16.99100 -16.58768 -16.10106 -15.41155 -14.73837 -14.53828 -14.08088 -13.94859 -13.83876 -13.18883 -12.97450 -12.62386 -12.40094 -12.37259 -11.93407 -11.61162 -11.48713 -11.09529 -10.94424 -10.91865 -10.82933 -10.42005 -10.39451 -10.10113 -10.02264 -9.70033 -9.34401 -9.07074 -8.62856 -8.39925 -7.32295 -6.04364 -4.06071 1.20995 1.57349 1.75414 3.28398 3.36342 3.39736 3.59623 3.73513 4.42911 4.70876 4.88979 5.21966 5.26701 5.31772 5.36934 5.46531 5.48412 5.61795 5.64492 5.75953 5.87713 5.98092 6.14347 6.17165 6.31318 6.37670 6.38789 6.55644 6.74777 6.85377 6.96945 7.00927 7.39593 7.58904 7.71978 7.83724 7.94246 8.36728 8.99689 9.57925 11.07082 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.003434 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.640656 B = 8150.885454 C = 9109.969113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.011 4.011 3 C -0.189 4.189 4 C -0.051 4.051 5 C -0.202 4.202 6 C 0.256 3.744 7 N -0.732 5.732 8 C 0.122 3.878 9 C -0.096 4.096 10 H 0.063 0.937 11 C -0.133 4.133 12 C 0.031 3.969 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.181 4.181 22 Br -0.060 7.060 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.402 0.598 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.030 0.970 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.340 9.916 1.278 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 C -0.210 4.210 4 C -0.070 4.070 5 C -0.225 4.225 6 C 0.146 3.854 7 N -0.359 5.359 8 C -0.001 4.001 9 C -0.115 4.115 10 H 0.081 0.919 11 C -0.190 4.190 12 C -0.007 4.007 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.265 4.265 22 Br 0.024 6.976 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.240 0.760 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.260 9.301 1.269 22.329 hybrid contribution 0.622 -0.887 -0.083 1.087 sum -19.638 8.414 1.185 21.397 Atomic orbital electron populations 1.20978 0.90880 1.03350 1.02843 1.19476 0.95840 0.91196 0.94815 1.20664 0.94096 0.96595 1.09670 1.20983 0.94020 0.97454 0.94552 1.20696 1.00235 0.90453 1.11155 1.17595 0.89100 0.87724 0.90949 1.45388 1.06815 1.04900 1.78778 1.21733 0.77674 0.99816 1.00877 1.21454 1.00597 0.91731 0.97753 0.91902 1.21733 0.98042 1.01971 0.97292 1.19079 0.86747 0.97484 0.97367 1.21224 0.91870 0.92465 1.49847 0.92477 1.25012 0.97086 0.96952 0.95398 1.69966 1.02237 1.30580 1.50632 0.86559 0.78870 0.85087 0.77640 1.19755 1.21028 1.21040 1.21064 0.92296 0.91236 1.21953 1.96559 1.75030 1.27845 1.98121 0.90653 0.91206 0.90710 0.86020 0.85768 0.85109 0.76050 0.92158 0.92220 0.91637 0.93385 0.95095 0.96409 0.96259 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.55 36.00 0.34 -0.78 16 2 C -0.01 -0.13 5.88 -104.63 -0.62 -0.74 16 3 C -0.19 -2.06 9.70 -39.55 -0.38 -2.44 16 4 C -0.05 -0.58 10.04 -39.61 -0.40 -0.97 16 5 C -0.20 -2.70 9.31 -39.39 -0.37 -3.06 16 6 C 0.26 3.72 6.65 -83.74 -0.56 3.16 16 7 N -0.73 -11.15 5.41 -58.61 -0.32 -11.47 16 8 C 0.12 2.03 4.30 -4.04 -0.02 2.02 16 9 C -0.10 -1.87 2.37 -90.62 -0.22 -2.09 16 10 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 11 C -0.13 -2.43 8.88 37.16 0.33 -2.10 16 12 C 0.03 0.75 4.45 -27.89 -0.12 0.63 16 13 C -0.52 -14.03 8.41 -34.44 -0.29 -14.32 16 14 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C -0.18 -2.45 6.24 -39.33 -0.25 -2.69 16 22 Br -0.06 -0.75 30.20 -68.01 -2.05 -2.80 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.07 0.70 6.64 -51.93 -0.34 0.35 16 26 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.13 1.70 6.73 -52.49 -0.35 1.35 16 29 H 0.40 6.05 6.05 -40.82 -0.25 5.81 16 30 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 31 H 0.06 0.98 7.96 -51.93 -0.41 0.57 16 32 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -28.79 320.71 -9.85 -38.63 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.39 Total: 1.98 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.63 Total: -21.91 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.42 Total: -37.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.05 Total: -2.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.79 -9.85 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308708476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.198 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds