Wall clock time and date at job start Tue Mar 31 2020 09:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47295 * 240.00602 * 3 2 1 5 5 H 1.48498 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47036 * 120.00486 * 3 2 1 7 7 C 1.38987 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.37330 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.36493 * 126.06513 * 180.02562 * 9 7 2 11 11 C 1.35680 * 107.50374 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08209 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00113 * 179.97438 * 12 11 10 14 14 O 1.21300 * 120.00443 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99885 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47237 * 180.02562 * 15 13 12 17 17 H 1.08994 * 109.35810 * 306.62614 * 16 15 13 18 18 C 1.49576 * 109.41482 * 66.44976 * 16 15 13 19 19 C 1.30322 * 119.15842 * 138.72239 * 18 16 15 20 20 S 1.77797 * 107.56501 * 359.67784 * 19 18 16 21 21 O 1.42106 * 105.57463 * 230.89852 * 20 19 18 22 22 O 1.42098 * 105.61278 * 100.43750 * 20 19 18 23 23 C 1.54943 * 109.41615 * 186.79550 * 16 15 13 24 24 C 1.40651 * 107.84006 * 0.26097 * 11 10 9 25 25 N 1.30910 * 108.38323 * 359.55763 * 24 11 10 26 26 H 0.97005 * 119.99939 * 359.97438 * 1 2 3 27 27 H 1.07993 * 126.24783 * 0.04225 * 10 9 7 28 28 H 0.97008 * 119.99616 * 359.97438 * 12 11 10 29 29 H 1.08999 * 109.47334 * 59.99860 * 15 13 12 30 30 H 1.09009 * 109.47010 * 299.99739 * 15 13 12 31 31 H 1.08000 * 120.42501 * 318.45546 * 18 16 15 32 32 H 1.07999 * 126.22188 * 179.66925 * 19 18 16 33 33 H 1.09006 * 111.33088 * 332.45691 * 23 16 15 34 34 H 1.08998 * 111.33469 * 97.11977 * 23 16 15 35 35 H 1.07997 * 125.81193 * 179.70320 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2820 2.7465 0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3212 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0005 11 6 0.8578 -4.5384 -0.0011 12 7 0.9890 -5.9382 -0.0008 13 6 -0.1102 -6.7181 -0.0009 14 8 -1.2128 -6.2124 -0.0009 15 6 0.0305 -8.2186 0.0000 16 6 -1.3581 -8.8610 -0.0010 17 1 -1.9444 -8.4555 0.8235 18 6 -2.0448 -8.5589 -1.2951 19 6 -2.7316 -9.4972 -1.8836 20 16 -2.6139 -10.9591 -0.8785 21 8 -2.2168 -11.9987 -1.7622 22 8 -3.8296 -11.0178 -0.1451 23 6 -1.2164 -10.3941 0.1728 24 6 -0.3513 -3.8199 -0.0076 25 7 -0.0716 -2.5410 -0.0012 26 1 -0.4850 0.8401 0.0004 27 1 2.9300 -3.8708 0.0001 28 1 1.8707 -6.3427 -0.0005 29 1 0.5755 -8.5319 0.8904 30 1 0.5765 -8.5328 -0.8897 31 1 -1.9759 -7.5746 -1.7340 32 1 -3.2739 -9.4037 -2.8129 33 1 -0.2610 -10.7503 -0.2127 34 1 -1.3563 -10.6900 1.2125 35 1 -1.3420 -4.2499 -0.0141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362082251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:55 Heat of formation + Delta-G solvation = 8.601451 kcal Electronic energy + Delta-G solvation = -22536.499253 eV Core-core repulsion = 18857.957469 eV Total energy + Delta-G solvation = -3678.541784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21202 -39.15836 -37.45100 -37.13912 -36.10568 -34.32117 -33.25952 -31.82449 -30.33534 -29.08276 -27.50621 -24.97560 -23.70395 -21.31376 -20.85385 -20.15664 -19.52143 -19.00503 -17.66899 -17.33735 -16.87163 -16.29573 -15.76692 -15.52295 -15.35531 -15.09706 -14.70425 -14.29918 -14.00847 -13.54757 -13.40520 -13.06052 -12.93060 -12.72341 -12.60111 -12.31186 -12.23398 -11.78812 -11.73318 -11.51543 -11.29255 -11.04045 -10.93664 -10.67620 -10.60703 -10.30692 -10.23819 -9.33182 -9.23776 -8.88526 -8.14229 -6.80101 -6.62005 -4.30100 -0.17587 1.21393 2.40746 2.67580 2.97105 3.00278 3.04809 3.26664 3.42735 3.59206 3.76113 3.87708 3.92887 4.09597 4.32979 4.53946 4.63597 4.72977 4.93648 4.96220 5.04194 5.15764 5.28648 5.43325 5.53456 5.61873 5.97757 6.15790 6.36141 6.80320 6.86802 7.00578 7.15962 7.78231 8.04889 8.19261 8.52764 8.72219 9.29969 9.59058 10.33808 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.050721 B = 0.002415 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.905072 B =11591.135990 C =11875.081247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.141 5.141 10 C -0.084 4.084 11 C -0.065 4.065 12 N -0.621 5.621 13 C 0.492 3.508 14 O -0.537 6.537 15 C -0.126 4.126 16 C -0.070 4.070 17 H 0.132 0.868 18 C -0.025 4.025 19 C -0.680 4.680 20 S 2.444 3.556 21 O -0.941 6.941 22 O -0.933 6.933 23 C -0.576 4.576 24 C -0.033 4.033 25 N -0.261 5.261 26 H 0.276 0.724 27 H 0.145 0.855 28 H 0.398 0.602 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.181 0.819 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -17.214 0.200 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.235 4.235 11 C -0.170 4.170 12 N -0.262 5.262 13 C 0.278 3.722 14 O -0.415 6.415 15 C -0.167 4.167 16 C -0.090 4.090 17 H 0.149 0.851 18 C -0.045 4.045 19 C -0.788 4.788 20 S 2.626 3.374 21 O -0.938 6.938 22 O -0.931 6.931 23 C -0.706 4.706 24 C -0.208 4.208 25 N -0.092 5.092 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.231 0.769 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.166 0.834 32 H 0.198 0.802 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.859 -16.335 0.173 16.359 hybrid contribution 1.775 0.669 -0.128 1.901 sum 2.633 -15.667 0.045 15.887 Atomic orbital electron populations 1.70201 1.06152 1.28204 1.34984 1.25649 0.95719 1.00319 0.95429 0.85886 0.79155 0.79565 0.79498 1.19131 1.20093 1.19132 1.19839 0.91656 0.80553 1.53568 0.86624 1.44563 1.04065 1.03333 1.38870 1.21267 0.96852 0.85405 1.20006 1.17266 0.94305 0.81233 1.24229 1.42510 1.08227 1.04678 1.70824 1.20266 0.84740 0.88433 0.78750 1.90622 1.25657 1.74987 1.50224 1.21633 0.96604 0.92921 1.05504 1.20574 0.98414 0.91695 0.98282 0.85083 1.23219 0.88070 1.01582 0.91590 1.32581 1.11879 1.19473 1.14856 1.07233 0.77251 0.75890 0.77002 1.93597 1.83618 1.54355 1.62187 1.93645 1.40099 1.86449 1.72863 1.30695 1.19571 1.04124 1.16191 1.24113 0.97999 0.90763 1.07926 1.78271 0.90102 1.15111 1.25732 0.91331 0.83721 0.76914 0.87544 0.88196 0.83360 0.80176 0.83383 0.83243 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.10 11.81 55.49 0.66 -20.45 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.48 29.55 -169.99 -5.02 13.45 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.35 10.25 -14.81 -0.15 -8.50 16 8 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 9 N -0.14 -3.75 3.74 -11.41 -0.04 -3.80 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 N -0.62 -9.50 5.47 -10.00 -0.05 -9.56 16 13 C 0.49 6.94 7.46 -10.98 -0.08 6.86 16 14 O -0.54 -9.68 11.62 5.54 0.06 -9.62 16 15 C -0.13 -1.00 5.02 -27.88 -0.14 -1.14 16 16 C -0.07 -0.58 2.33 -91.29 -0.21 -0.79 16 17 H 0.13 1.16 7.89 -51.93 -0.41 0.75 16 18 C -0.02 -0.25 8.65 -36.38 -0.31 -0.57 16 19 C -0.68 -6.58 11.05 29.21 0.32 -6.25 16 20 S 2.44 21.68 6.19 -107.50 -0.66 21.01 16 21 O -0.94 -11.13 18.02 -57.38 -1.03 -12.17 16 22 O -0.93 -11.72 18.02 -57.38 -1.03 -12.75 16 23 C -0.58 -2.96 7.22 38.18 0.28 -2.68 16 24 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 25 N -0.26 -7.38 10.40 30.80 0.32 -7.06 16 26 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 28 H 0.40 4.41 8.83 -40.82 -0.36 4.05 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.15 1.77 6.90 -52.49 -0.36 1.41 16 32 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.15 0.41 7.92 -51.93 -0.41 0.00 16 34 H 0.15 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -37.99 316.98 -6.90 -44.89 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.51 Total: 8.33 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.35 Total: -17.06 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.88 Total: -40.87 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -2.00 Total: -34.53 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 21.68 SS G_CDS: -0.66 Total: 21.01 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.99 -6.90 -44.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362082251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.494 kcal (2) G-P(sol) polarization free energy of solvation -37.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds