Wall clock time and date at job start Tue Mar 31 2020 09:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86806 * 119.99414 * 2 1 4 4 H 1.48499 * 109.47248 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46835 * 119.99956 * 3 2 1 6 6 H 1.48500 * 109.46679 * 239.99603 * 3 2 1 7 7 C 1.38978 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00268 * 2.00003 * 7 2 1 9 9 N 1.37330 * 119.99941 * 182.00288 * 7 2 1 10 10 C 1.36491 * 126.07098 * 186.38503 * 9 7 2 11 11 C 1.35681 * 107.50799 * 179.83417 * 10 9 7 12 12 N 1.40592 * 126.08390 * 180.15260 * 11 10 9 13 13 C 1.34770 * 120.00219 * 180.28810 * 12 11 10 14 14 O 1.21296 * 120.00244 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00016 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47197 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.40863 * 53.40073 * 16 15 13 18 18 C 1.49572 * 109.41399 * 293.54415 * 16 15 13 19 19 C 1.30330 * 119.15928 * 221.27091 * 18 16 15 20 20 S 1.77801 * 107.56185 * 0.33136 * 19 18 16 21 21 O 1.42102 * 105.57068 * 129.09438 * 20 19 18 22 22 O 1.42095 * 105.57013 * 259.56177 * 20 19 18 23 23 C 1.54937 * 109.41665 * 173.19877 * 16 15 13 24 24 C 1.40646 * 107.83441 * 0.42157 * 11 10 9 25 25 N 1.30905 * 108.39135 * 359.73711 * 24 11 10 26 26 H 0.97005 * 119.99645 * 174.76056 * 1 2 3 27 27 H 1.07993 * 126.24169 * 359.97438 * 10 9 7 28 28 H 0.97004 * 119.99800 * 0.29571 * 12 11 10 29 29 H 1.09005 * 109.46924 * 299.99977 * 15 13 12 30 30 H 1.08996 * 109.47290 * 59.99496 * 15 13 12 31 31 H 1.07998 * 120.42338 * 41.29904 * 18 16 15 32 32 H 1.07996 * 126.21836 * 180.34378 * 19 18 16 33 33 H 1.08993 * 111.34141 * 262.82877 * 23 16 15 34 34 H 1.09010 * 111.33332 * 27.53971 * 23 16 15 35 35 H 1.08005 * 125.80880 * 179.71160 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2468 1.6179 0.0000 4 1 1.2818 2.7465 -0.0006 5 1 3.1005 1.6966 1.2125 6 1 3.1006 1.6965 -1.2125 7 6 2.0079 -1.2036 0.0005 8 1 1.4685 -2.1386 -0.0317 9 7 3.3806 -1.2038 0.0421 10 6 4.1879 -2.2981 -0.0749 11 6 5.4721 -1.8696 0.0157 12 7 6.6213 -2.6760 -0.0581 13 6 7.8436 -2.1192 0.0534 14 8 7.9522 -0.9224 0.2178 15 6 9.0755 -2.9837 -0.0263 16 6 10.3222 -2.1103 0.1279 17 1 10.2383 -1.5167 1.0382 18 6 10.4390 -1.1979 -1.0515 19 6 11.6113 -0.9944 -1.5834 20 16 12.7917 -1.9547 -0.6636 21 8 13.5224 -2.6922 -1.6339 22 8 13.4239 -1.0382 0.2193 23 6 11.5768 -3.0149 0.2182 24 6 5.4488 -0.4758 0.2027 25 7 4.2005 -0.0819 0.2180 26 1 -0.4850 -0.8366 -0.0767 27 1 3.8637 -3.3185 -0.2162 28 1 6.5345 -3.6332 -0.1893 29 1 9.0505 -3.7261 0.7715 30 1 9.1032 -3.4887 -0.9918 31 1 9.5631 -0.7135 -1.4571 32 1 11.8267 -0.3580 -2.4289 33 1 11.8730 -3.1801 1.2540 34 1 11.4229 -3.9597 -0.3033 35 1 6.3137 0.1613 0.3150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362082296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:57 Heat of formation + Delta-G solvation = -2.939165 kcal Electronic energy + Delta-G solvation = -22664.134229 eV Core-core repulsion = 18985.092006 eV Total energy + Delta-G solvation = -3679.042223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.54134 -39.51659 -37.58069 -37.24155 -36.17349 -34.56764 -33.55121 -31.95918 -30.77109 -29.33307 -27.99854 -24.70005 -23.72861 -21.68737 -20.88323 -20.15737 -20.01972 -19.08039 -18.21091 -17.45036 -17.09117 -16.45469 -16.35126 -15.82987 -15.30379 -15.18158 -14.73519 -14.37191 -13.96046 -13.68590 -13.55648 -13.42282 -13.13513 -12.84845 -12.70642 -12.48768 -12.38894 -12.30082 -11.90818 -11.87916 -11.04963 -10.99434 -10.88430 -10.72900 -10.38538 -10.23225 -10.01177 -9.57910 -9.56033 -8.61761 -8.38953 -7.40727 -7.17627 -4.57408 -0.24911 1.12621 2.33226 2.47309 2.98409 3.13100 3.29498 3.49898 3.65765 3.70604 3.81496 3.84751 3.92476 4.00212 4.18076 4.29992 4.43545 4.61305 4.81150 4.86042 4.91707 5.01068 5.17049 5.33474 5.43315 5.51573 5.84929 5.89180 5.98261 6.48598 6.60832 6.72431 7.26606 7.57191 7.80654 7.94820 8.18777 8.45313 8.82518 9.08617 10.04503 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.002695 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.125782 B =10388.993964 C =10836.431461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.038 3.962 3 Si 1.122 2.878 4 H -0.313 1.313 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.378 4.378 8 H 0.114 0.886 9 N -0.147 5.147 10 C -0.062 4.062 11 C -0.057 4.057 12 N -0.622 5.622 13 C 0.496 3.504 14 O -0.537 6.537 15 C -0.126 4.126 16 C -0.070 4.070 17 H 0.132 0.868 18 C -0.027 4.027 19 C -0.678 4.678 20 S 2.445 3.555 21 O -0.939 6.939 22 O -0.933 6.933 23 C -0.576 4.576 24 C 0.007 3.993 25 N -0.359 5.359 26 H 0.280 0.720 27 H 0.153 0.847 28 H 0.401 0.599 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.181 0.819 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.318 -10.248 -0.565 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.177 4.177 3 Si 0.953 3.047 4 H -0.244 1.244 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.510 4.510 8 H 0.132 0.868 9 N 0.088 4.912 10 C -0.215 4.215 11 C -0.162 4.162 12 N -0.265 5.265 13 C 0.282 3.718 14 O -0.414 6.414 15 C -0.166 4.166 16 C -0.090 4.090 17 H 0.149 0.851 18 C -0.047 4.047 19 C -0.786 4.786 20 S 2.627 3.373 21 O -0.936 6.936 22 O -0.930 6.930 23 C -0.706 4.706 24 C -0.165 4.165 25 N -0.194 5.194 26 H 0.091 0.909 27 H 0.170 0.830 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.199 0.801 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 19.312 -6.775 -0.264 20.468 hybrid contribution -0.644 -3.169 -0.385 3.256 sum 18.668 -9.944 -0.649 21.161 Atomic orbital electron populations 1.70915 1.06264 1.31778 1.36659 1.27016 0.95745 1.04189 0.90728 0.82537 0.71549 0.70751 0.79870 1.24406 1.19775 1.21165 1.21183 0.76447 0.98133 1.55215 0.86819 1.44799 1.05460 1.03240 1.37729 1.21320 0.89033 0.93454 1.17665 1.17144 0.84914 0.91163 1.22989 1.42507 1.03928 1.10087 1.69958 1.20328 0.84151 0.88887 0.78445 1.90615 1.86148 1.15243 1.49431 1.21632 0.91002 0.98488 1.05522 1.20572 0.93583 0.94749 1.00059 0.85085 1.23200 1.00265 0.90738 0.90491 1.32610 1.12871 1.18228 1.14886 1.07235 0.76497 0.77115 0.76501 1.93602 1.69339 1.72730 1.57977 1.93648 1.72827 1.60321 1.66188 1.30697 1.12449 1.12165 1.15304 1.23716 0.94692 0.92933 1.05142 1.76260 1.01503 1.09261 1.32390 0.90890 0.83007 0.76505 0.87379 0.88018 0.83418 0.80142 0.83212 0.83348 0.79824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.46 13.68 55.49 0.76 -21.70 16 2 C 0.04 1.03 5.50 -17.51 -0.10 0.93 16 3 Si 1.12 27.93 25.74 -169.99 -4.38 23.56 16 4 H -0.31 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.27 -6.82 6.75 56.52 0.38 -6.44 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.38 -9.90 10.60 -14.81 -0.16 -10.06 16 8 H 0.11 2.88 8.05 -52.49 -0.42 2.46 16 9 N -0.15 -3.69 3.67 -11.41 -0.04 -3.73 16 10 C -0.06 -1.29 11.49 -16.39 -0.19 -1.48 16 11 C -0.06 -1.11 6.90 -83.84 -0.58 -1.69 16 12 N -0.62 -8.46 5.47 -10.00 -0.05 -8.51 16 13 C 0.50 6.18 7.46 -10.99 -0.08 6.09 16 14 O -0.54 -8.68 11.62 5.54 0.06 -8.61 16 15 C -0.13 -0.84 5.02 -27.88 -0.14 -0.98 16 16 C -0.07 -0.50 2.33 -91.29 -0.21 -0.71 16 17 H 0.13 1.00 7.89 -51.93 -0.41 0.59 16 18 C -0.03 -0.25 8.65 -36.38 -0.31 -0.56 16 19 C -0.68 -5.96 11.04 29.20 0.32 -5.64 16 20 S 2.44 19.83 6.19 -107.50 -0.67 19.16 16 21 O -0.94 -10.51 18.02 -57.37 -1.03 -11.55 16 22 O -0.93 -11.04 18.01 -57.37 -1.03 -12.08 16 23 C -0.58 -2.46 7.22 38.18 0.28 -2.19 16 24 C 0.01 0.16 10.85 -17.04 -0.18 -0.03 16 25 N -0.36 -9.17 7.15 30.80 0.22 -8.95 16 26 H 0.28 7.18 8.72 -40.82 -0.36 6.82 16 27 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 28 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 29 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.15 1.57 6.90 -52.49 -0.36 1.21 16 32 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.15 0.29 7.92 -51.92 -0.41 -0.12 16 35 H 0.19 3.99 5.92 -52.48 -0.31 3.68 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -36.79 312.36 -6.37 -43.16 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.56 Total: 0.85 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.36 Total: -16.31 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.88 Total: -42.89 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -2.00 Total: -32.24 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: -4.38 Total: 23.56 kcal Atomic # 16 Polarization: 19.83 SS G_CDS: -0.67 Total: 19.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.79 -6.37 -43.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362082296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.221 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds