Wall clock time and date at job start Tue Mar 31 2020 09:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38284 * 119.95666 * 2 1 4 4 C 1.38358 * 120.14012 * 180.02562 * 3 2 1 5 5 Br 1.89107 * 119.97456 * 179.97438 * 4 3 2 6 6 C 1.38212 * 120.05524 * 359.74249 * 4 3 2 7 7 C 1.38877 * 119.91270 * 0.50576 * 6 4 3 8 8 N 1.39673 * 120.06842 * 179.77018 * 7 6 4 9 9 C 1.46493 * 120.00319 * 359.72459 * 8 7 6 10 10 C 1.52998 * 109.47217 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47104 * 55.00421 * 10 9 8 12 12 C 1.52998 * 109.47026 * 294.99617 * 10 9 8 13 13 C 1.53002 * 109.46886 * 174.99768 * 10 9 8 14 14 C 1.50706 * 109.47153 * 184.99546 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38092 * 119.95708 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47314 * 269.97922 * 1 2 3 24 24 H 1.08995 * 109.47330 * 29.97746 * 1 2 3 25 25 H 1.09000 * 109.47329 * 149.98399 * 1 2 3 26 26 H 1.08004 * 119.93233 * 359.97438 * 3 2 1 27 27 H 1.07995 * 120.04663 * 180.27623 * 6 4 3 28 28 H 0.97003 * 119.99765 * 179.72971 * 8 7 6 29 29 H 1.09001 * 109.47299 * 60.00002 * 9 8 7 30 30 H 1.09002 * 109.47069 * 300.00170 * 9 8 7 31 31 H 1.08990 * 109.47503 * 300.00380 * 12 10 9 32 32 H 1.09001 * 109.46970 * 60.00396 * 12 10 9 33 33 H 1.09003 * 109.46843 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47178 * 65.00336 * 13 10 9 35 35 H 1.08993 * 109.47411 * 305.00018 * 13 10 9 36 36 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 37 37 H 1.07996 * 120.02400 * 359.95879 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1981 0.0000 4 6 3.5811 1.2025 -0.0005 5 35 4.5206 2.8437 -0.0013 6 6 4.2771 0.0085 0.0043 7 6 3.5860 -1.1961 -0.0009 8 7 4.2861 -2.4047 -0.0009 9 6 5.7510 -2.4026 -0.0015 10 6 6.2631 -3.8443 -0.0020 11 1 5.8290 -4.3838 -0.8437 12 6 5.8599 -4.5292 1.3054 13 6 7.7879 -3.8439 -0.1283 14 6 8.2821 -5.2622 -0.2522 15 1 7.5789 -6.0818 -0.2423 16 6 9.6319 -5.5134 -0.3783 17 7 10.4877 -4.5150 -0.3957 18 14 10.2444 -7.2714 -0.5326 19 1 11.7238 -7.2707 -0.6612 20 1 9.8529 -8.0399 0.6764 21 1 9.6433 -7.9012 -1.7356 22 6 2.1966 -1.1964 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 1.6557 2.1324 -0.0004 27 1 5.3571 0.0121 0.0084 28 1 3.8023 -3.2454 -0.0006 29 1 6.1140 -1.8880 0.8883 30 1 6.1133 -1.8884 -0.8917 31 1 6.2940 -3.9897 2.1471 32 1 4.7736 -4.5295 1.3954 33 1 6.2243 -5.5565 1.3048 34 1 8.2257 -3.3827 0.7570 35 1 8.0789 -3.2790 -1.0139 36 1 10.1697 -3.6021 -0.3159 37 1 1.6563 -2.1315 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560768548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:08 Heat of formation + Delta-G solvation = -4.470190 kcal Electronic energy + Delta-G solvation = -17278.089809 eV Core-core repulsion = 14486.050147 eV Total energy + Delta-G solvation = -2792.039662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69070 -37.00376 -34.47674 -33.12547 -32.34582 -30.27648 -28.94169 -27.13363 -26.60126 -25.64617 -22.92125 -22.15770 -20.73216 -19.56482 -17.00135 -16.82354 -16.28311 -15.55834 -14.80725 -14.15711 -14.05117 -13.99495 -13.75390 -13.40394 -13.16419 -13.01863 -12.45054 -12.42897 -11.94707 -11.75792 -11.51586 -11.23632 -11.09144 -11.04178 -10.75466 -10.45373 -10.33115 -10.14647 -10.08448 -9.70366 -9.64254 -8.69306 -8.57878 -8.36368 -7.40313 -6.38760 -4.08338 1.12091 1.47295 1.58965 3.41333 3.42951 3.53573 3.61866 3.65314 4.51836 4.64506 5.01938 5.06577 5.17858 5.30929 5.36719 5.39551 5.41535 5.48634 5.51868 5.70713 5.73493 5.79129 6.03310 6.14705 6.19715 6.23773 6.27563 6.44225 6.60675 6.71245 6.81148 6.90275 7.28501 7.35249 7.44663 7.79038 8.16087 8.42030 8.84830 9.63350 11.01678 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.003062 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.607805 B = 9140.797534 C =10425.646700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.033 4.033 5 Br -0.060 7.060 6 C -0.180 4.180 7 C 0.235 3.765 8 N -0.736 5.736 9 C 0.123 3.877 10 C -0.089 4.089 11 H 0.064 0.936 12 C -0.131 4.131 13 C 0.017 3.983 14 C -0.598 4.598 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.191 4.191 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.400 0.600 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.010 0.990 35 H 0.008 0.992 36 H 0.269 0.731 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.135 13.047 1.426 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.185 4.185 4 C -0.113 4.113 5 Br 0.026 6.974 6 C -0.204 4.204 7 C 0.127 3.873 8 N -0.362 5.362 9 C -0.001 4.001 10 C -0.108 4.108 11 H 0.082 0.918 12 C -0.189 4.189 13 C -0.021 4.021 14 C -0.636 4.636 15 H 0.068 0.932 16 C -0.189 4.189 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.214 4.214 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.236 0.764 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.161 12.740 1.255 21.410 hybrid contribution -1.673 0.255 0.172 1.701 sum -18.834 12.996 1.426 22.927 Atomic orbital electron populations 1.20787 0.90878 1.02837 1.02441 1.19539 0.95713 0.92006 0.96400 1.20610 0.91681 0.98101 1.08094 1.21413 0.94344 0.90847 1.04710 1.96686 1.76050 1.27052 1.97650 1.20571 1.00223 0.89733 1.09903 1.17760 0.90872 0.86525 0.92110 1.45000 1.06416 1.04652 1.80174 1.21692 0.78174 0.99554 1.00681 1.21298 0.99730 0.91815 0.97911 0.91773 1.21713 0.98048 1.02022 0.97090 1.19206 0.88617 0.98120 0.96110 1.21982 0.94591 0.91992 1.55083 0.93191 1.25828 0.93471 1.05722 0.93920 1.70785 1.37261 1.00403 1.46406 0.83563 0.76280 0.74125 0.76468 1.20769 1.21469 1.21479 1.20556 0.91930 0.98228 1.10674 0.90977 0.91407 0.91403 0.85763 0.85047 0.76426 0.92469 0.92450 0.93505 0.94955 0.91565 0.97202 0.97356 0.92093 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.03 -0.38 5.88 -104.66 -0.61 -0.99 16 3 C -0.16 -1.88 9.44 -39.52 -0.37 -2.25 16 4 C -0.03 -0.43 6.22 -39.55 -0.25 -0.67 16 5 Br -0.06 -0.71 33.70 -68.01 -2.29 -3.01 16 6 C -0.18 -2.52 9.05 -39.35 -0.36 -2.88 16 7 C 0.23 3.19 6.65 -83.79 -0.56 2.63 16 8 N -0.74 -10.24 5.46 -58.64 -0.32 -10.56 16 9 C 0.12 2.00 4.30 -4.05 -0.02 1.98 16 10 C -0.09 -1.69 2.37 -90.62 -0.22 -1.91 16 11 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.13 -2.33 8.88 37.16 0.33 -2.01 16 13 C 0.02 0.41 3.76 -27.88 -0.10 0.31 16 14 C -0.60 -16.41 8.41 -34.44 -0.29 -16.70 16 15 H 0.05 1.34 7.06 -52.49 -0.37 0.97 16 16 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 18 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.19 -2.24 9.55 -39.38 -0.38 -2.61 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 27 H 0.13 1.91 6.73 -52.49 -0.35 1.56 16 28 H 0.40 5.05 7.67 -40.82 -0.31 4.74 16 29 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 30 H 0.06 0.97 7.96 -51.93 -0.41 0.55 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 33 H 0.07 1.29 6.95 -51.93 -0.36 0.93 16 34 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 16 35 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 36 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -29.42 325.44 -10.06 -39.48 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.47 Total: 1.50 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -2.56 Total: -25.28 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.44 Total: -37.46 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.42 -10.06 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560768548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.014 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds