Wall clock time and date at job start Tue Mar 31 2020 09:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39612 * 120.10936 * 2 1 4 4 C 1.47673 * 120.10321 * 359.94984 * 3 2 1 5 5 O 1.21479 * 120.00181 * 354.32961 * 4 3 2 6 6 O 1.34716 * 120.00459 * 174.32633 * 4 3 2 7 7 C 1.39653 * 119.79270 * 179.97438 * 3 2 1 8 8 C 1.37960 * 119.99728 * 359.97438 * 7 3 2 9 9 C 1.38353 * 120.21814 * 0.02562 * 8 7 3 10 10 Cl 1.73603 * 119.89826 * 179.97438 * 9 8 7 11 11 C 1.38506 * 120.10740 * 180.27214 * 2 1 3 12 12 N 1.40014 * 119.99980 * 0.04307 * 11 2 1 13 13 C 1.34775 * 119.99955 * 232.57082 * 12 11 2 14 14 O 1.21287 * 119.99639 * 354.47381 * 13 12 11 15 15 C 1.50698 * 120.00140 * 174.47418 * 13 12 11 16 16 C 1.52998 * 109.47221 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47221 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00033 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00387 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47248 * 60.00000 * 21 19 17 23 23 H 1.48498 * 109.47119 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46856 * 300.00157 * 21 19 17 25 25 H 1.09001 * 109.47213 * 83.75090 * 1 2 3 26 26 H 1.08999 * 109.47208 * 203.75096 * 1 2 3 27 27 H 1.08996 * 109.47043 * 323.75172 * 1 2 3 28 28 H 0.96693 * 117.00621 * 179.97438 * 6 4 3 29 29 H 1.07996 * 119.99913 * 179.97438 * 7 3 2 30 30 H 1.08004 * 119.89419 * 179.97438 * 8 7 3 31 31 H 0.96994 * 119.99693 * 52.56513 * 12 11 2 32 32 H 1.09005 * 109.47081 * 299.99938 * 15 13 12 33 33 H 1.09001 * 109.46945 * 59.99835 * 15 13 12 34 34 H 1.08999 * 109.47507 * 300.00209 * 16 15 13 35 35 H 1.09001 * 109.47192 * 60.00113 * 16 15 13 36 36 H 0.97003 * 120.00355 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.2077 0.0000 4 6 1.4737 2.4894 -0.0011 5 8 0.2635 2.4964 -0.1060 6 8 2.1465 3.6508 0.1142 7 6 3.6039 1.2000 0.0005 8 6 4.2870 0.0014 0.0016 9 6 3.5931 -1.1955 0.0016 10 17 4.4611 -2.6990 0.0023 11 6 2.2018 -1.1982 -0.0057 12 7 1.5040 -2.4120 -0.0124 13 6 1.7825 -3.3545 0.9099 14 8 2.7040 -3.1938 1.6820 15 6 0.9492 -4.6080 0.9817 16 6 1.4724 -5.5046 2.1057 17 6 0.6394 -6.7584 2.1771 18 1 -0.1814 -6.9013 1.4899 19 6 0.9245 -7.7226 3.1205 20 7 1.9229 -7.5480 3.9583 21 14 -0.1086 -9.2765 3.2095 22 1 -0.0228 -10.0027 1.9170 23 1 0.3985 -10.1462 4.3011 24 1 -1.5232 -8.9155 3.4815 25 1 -0.3634 0.1119 -1.0216 26 1 -0.3633 -0.9406 0.4139 27 1 -0.3633 0.8287 0.6076 28 1 1.6232 4.4638 0.1081 29 1 4.1490 2.1323 0.0001 30 1 5.3670 -0.0026 0.0016 31 1 0.8200 -2.5745 -0.6807 32 1 -0.0892 -4.3431 1.1813 33 1 1.0122 -5.1411 0.0330 34 1 2.5106 -5.7695 1.9057 35 1 1.4097 -4.9718 3.0545 36 1 2.1237 -8.2266 4.6218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599997696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:06 Heat of formation + Delta-G solvation = -104.231387 kcal Electronic energy + Delta-G solvation = -22848.880527 eV Core-core repulsion = 19131.109486 eV Total energy + Delta-G solvation = -3717.771041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05250 -39.98784 -38.36433 -36.58364 -36.28620 -34.78179 -33.49714 -32.56601 -31.24750 -30.03902 -27.49333 -25.76929 -24.58473 -22.82617 -21.48651 -21.19941 -19.76504 -18.57226 -17.77896 -17.07837 -16.41134 -16.17183 -16.06046 -15.90853 -15.63220 -14.62322 -14.45638 -14.07847 -13.87973 -13.55043 -13.32608 -12.90880 -12.82000 -12.64306 -12.46572 -12.20258 -11.84771 -11.69033 -11.29959 -11.19531 -10.94554 -10.84763 -10.63893 -10.46638 -9.99329 -9.91116 -9.65667 -9.22434 -9.10803 -8.91338 -8.43592 -8.33001 -5.97736 -4.02450 0.29852 0.92658 2.13070 2.19429 2.61721 3.07524 3.27954 3.33515 3.38496 3.39621 3.41212 4.39688 4.45931 4.55144 4.73167 4.91766 5.03500 5.25269 5.37311 5.44532 5.53278 5.55607 5.76133 5.83720 5.89071 6.03990 6.15676 6.15813 6.17350 6.33568 6.72096 6.81538 7.57017 7.59819 7.71791 7.82572 8.04282 8.34894 8.60680 9.05432 9.61261 11.13050 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.003215 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.928854 B = 8707.773266 C = 9542.262449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 C -0.127 4.127 4 C 0.530 3.470 5 O -0.506 6.506 6 O -0.512 6.512 7 C -0.057 4.057 8 C -0.124 4.124 9 C 0.006 3.994 10 Cl -0.024 7.024 11 C 0.145 3.855 12 N -0.688 5.688 13 C 0.505 3.495 14 O -0.498 6.498 15 C -0.125 4.125 16 C 0.039 3.961 17 C -0.529 4.529 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.414 0.586 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.411 0.589 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 21.180 -12.031 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.025 4.025 3 C -0.129 4.129 4 C 0.375 3.625 5 O -0.396 6.396 6 O -0.324 6.324 7 C -0.076 4.076 8 C -0.143 4.143 9 C -0.024 4.024 10 Cl 0.006 6.994 11 C 0.049 3.951 12 N -0.338 5.338 13 C 0.294 3.706 14 O -0.369 6.369 15 C -0.165 4.165 16 C 0.001 3.999 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.273 0.727 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.248 0.752 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.355 20.614 -11.280 23.616 hybrid contribution -1.033 -0.518 -0.217 1.176 sum 1.322 20.096 -11.497 23.190 Atomic orbital electron populations 1.21105 0.88909 1.04275 1.03731 1.19903 0.97268 0.89675 0.95651 1.18660 0.93459 0.89551 1.11197 1.20725 0.85296 0.84141 0.72314 1.90862 1.15128 1.87595 1.46025 1.84550 1.45383 1.17091 1.85417 1.21305 0.92424 0.98500 0.95416 1.20944 1.00947 0.89927 1.02457 1.21450 0.91531 0.89403 0.99993 1.98439 1.75362 1.30083 1.95512 1.17100 0.89036 0.86481 1.02474 1.43881 1.41396 1.14023 1.34547 1.21832 0.84991 0.84743 0.79035 1.90760 1.28463 1.77821 1.39890 1.21874 0.98796 0.91852 1.03994 1.18893 0.96759 0.92455 0.91762 1.21163 1.15339 1.03199 1.17003 0.92630 1.25012 0.95261 0.98420 0.95601 1.69980 1.28621 1.34790 1.19361 0.86656 0.80550 0.83122 0.77628 1.20240 1.21284 1.20227 0.90150 0.91201 0.88482 0.72687 0.83595 0.83829 0.75224 0.89911 0.89994 0.95738 0.95771 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.48 36.00 0.31 -1.05 16 2 C -0.02 -0.27 5.93 -104.01 -0.62 -0.89 16 3 C -0.13 -1.39 5.87 -105.00 -0.62 -2.01 16 4 C 0.53 5.32 8.20 34.58 0.28 5.60 16 5 O -0.51 -6.06 14.11 -19.25 -0.27 -6.33 16 6 O -0.51 -3.48 12.69 -40.54 -0.51 -4.00 16 7 C -0.06 -0.55 9.61 -39.16 -0.38 -0.93 16 8 C -0.12 -1.35 9.80 -39.64 -0.39 -1.74 16 9 C 0.01 0.08 5.85 -39.21 -0.23 -0.15 16 10 Cl -0.02 -0.38 24.88 -51.86 -1.29 -1.67 16 11 C 0.14 1.99 5.92 -83.69 -0.50 1.49 16 12 N -0.69 -9.56 4.08 -9.87 -0.04 -9.60 16 13 C 0.50 9.24 6.83 -10.99 -0.08 9.17 16 14 O -0.50 -10.98 12.67 5.55 0.07 -10.91 16 15 C -0.13 -2.43 5.64 -27.89 -0.16 -2.59 16 16 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 17 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.75 7.20 -51.93 -0.37 0.38 16 27 H 0.10 1.16 5.82 -51.93 -0.30 0.85 16 28 H 0.41 0.95 9.11 45.56 0.42 1.37 16 29 H 0.15 1.03 7.62 -52.49 -0.40 0.63 16 30 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.41 4.33 8.60 -40.82 -0.35 3.98 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -35.30 326.61 -7.39 -42.69 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.08 Total: 0.54 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.90 Total: -5.68 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.70 Total: -36.08 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.72 Total: -21.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.29 Total: -1.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.30 -7.39 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599997696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.540 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds