Wall clock time and date at job start Tue Mar 31 2020 09:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37965 * 120.06305 * 2 1 4 4 C 1.38339 * 120.16563 * 180.25422 * 3 2 1 5 5 C 1.38503 * 120.29243 * 359.48109 * 4 3 2 6 6 Cl 1.73606 * 119.93863 * 180.23365 * 5 4 3 7 7 C 1.38041 * 120.12680 * 0.26127 * 5 4 3 8 8 C 1.39625 * 120.06742 * 179.73947 * 2 1 3 9 9 C 1.47735 * 120.14236 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99853 * 317.57394 * 9 8 2 11 11 N 1.34773 * 119.99898 * 137.57708 * 9 8 2 12 12 C 1.36868 * 120.00118 * 4.86647 * 11 9 8 13 13 H 1.07997 * 120.00525 * 318.13836 * 12 11 9 14 14 C 1.39049 * 119.99794 * 138.13559 * 12 11 9 15 15 N 1.31364 * 120.00425 * 341.48348 * 14 12 11 16 16 Si 1.86807 * 120.00077 * 161.48512 * 14 12 11 17 17 H 1.48500 * 109.47186 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47258 * 119.99834 * 16 14 12 19 19 H 1.48503 * 109.46727 * 239.99653 * 16 14 12 20 20 C 1.46505 * 119.99621 * 184.87265 * 11 9 8 21 21 C 1.52995 * 109.47356 * 85.94912 * 20 11 9 22 22 C 1.50702 * 109.47155 * 179.97438 * 21 20 11 23 23 O 1.20826 * 119.99825 * 0.02562 * 22 21 20 24 24 O 1.34232 * 119.99645 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.47038 * 264.56794 * 1 2 3 26 26 H 1.08993 * 109.47246 * 24.57046 * 1 2 3 27 27 H 1.09001 * 109.47286 * 144.56829 * 1 2 3 28 28 H 1.07997 * 119.92322 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.85005 * 179.76508 * 4 3 2 30 30 H 1.07995 * 120.08625 * 179.97438 * 7 5 4 31 31 H 0.96996 * 120.00395 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.46626 * 205.94552 * 20 11 9 33 33 H 1.08999 * 109.47216 * 325.94144 * 20 11 9 34 34 H 1.09005 * 109.46725 * 299.99913 * 21 20 11 35 35 H 1.08999 * 109.47586 * 59.99458 * 21 20 11 36 36 H 0.96700 * 116.99041 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1941 0.0000 4 6 3.5815 1.1965 -0.0053 5 6 4.2823 0.0019 0.0002 6 17 6.0183 0.0158 -0.0004 7 6 3.6030 -1.1998 0.0055 8 6 2.2065 -1.2084 0.0055 9 6 1.4725 -2.4905 0.0119 10 8 0.4962 -2.6285 0.7234 11 7 1.8851 -3.5071 -0.7708 12 6 3.0399 -3.3875 -1.4958 13 1 3.2640 -2.4622 -2.0057 14 6 3.9245 -4.4573 -1.5757 15 7 3.8598 -5.4303 -0.6956 16 14 5.2050 -4.5109 -2.9348 17 1 5.0696 -3.3047 -3.7904 18 1 6.5629 -4.5426 -2.3345 19 1 5.0001 -5.7283 -3.7601 20 6 1.0975 -4.7401 -0.8457 21 6 0.0077 -4.5855 -1.9082 22 6 -0.8021 -5.8541 -1.9857 23 8 -0.5351 -6.7861 -1.2645 24 8 -1.8205 -5.9482 -2.8550 25 1 -0.3633 -0.0973 1.0230 26 1 -0.3633 0.9345 -0.4273 27 1 -0.3634 -0.8373 -0.5958 28 1 1.6579 2.1292 -0.0004 29 1 4.1173 2.1342 -0.0091 30 1 4.1501 -2.1309 0.0094 31 1 4.4771 -6.1764 -0.7512 32 1 1.7495 -5.5720 -1.1123 33 1 0.6362 -4.9359 0.1223 34 1 -0.6442 -3.7535 -1.6416 35 1 0.4690 -4.3897 -2.8762 36 1 -2.3109 -6.7815 -2.8679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600425322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:57 Heat of formation + Delta-G solvation = -111.822278 kcal Electronic energy + Delta-G solvation = -23727.723623 eV Core-core repulsion = 20009.623417 eV Total energy + Delta-G solvation = -3718.100206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96845 -39.56671 -37.79998 -36.11047 -35.83511 -35.09407 -32.15910 -32.02726 -31.39927 -29.91910 -26.54934 -25.34345 -24.48264 -22.66713 -21.24806 -20.41053 -19.36542 -17.93949 -17.55759 -16.34248 -15.96977 -15.69725 -15.53623 -15.27885 -14.80912 -14.40001 -13.94209 -13.74582 -13.28974 -13.11904 -12.89830 -12.68457 -12.55151 -12.46059 -12.14936 -11.69132 -11.44352 -11.27257 -11.20518 -11.14620 -10.89795 -10.88318 -10.72620 -10.57412 -10.42521 -10.21727 -10.13664 -9.27186 -8.71859 -8.43240 -8.12227 -7.67330 -6.52630 -4.27028 1.40151 1.68105 2.52035 2.60347 3.04607 3.16545 3.19729 3.32645 3.61689 4.01263 4.23087 4.60124 4.83272 5.11300 5.33396 5.36338 5.51078 5.62503 5.68933 5.77438 5.96754 5.98704 6.07685 6.17803 6.22602 6.35082 6.48819 6.62293 6.67987 6.74519 6.78208 7.02331 7.16945 7.23014 7.32886 7.74151 8.18867 8.24609 8.89231 9.26412 9.70252 10.49408 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.005867 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.385315 B = 4771.390756 C = 6506.347880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 C -0.129 4.129 4 C -0.103 4.103 5 C -0.058 4.058 6 Cl -0.084 7.084 7 C -0.047 4.047 8 C -0.082 4.082 9 C 0.514 3.486 10 O -0.589 6.589 11 N -0.427 5.427 12 C -0.355 4.355 13 H 0.094 0.906 14 C 0.051 3.949 15 N -0.847 5.847 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.131 3.869 21 C -0.126 4.126 22 C 0.483 3.517 23 O -0.513 6.513 24 O -0.524 6.524 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.162 0.838 31 H 0.274 0.726 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 7.685 -3.316 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 C -0.147 4.147 4 C -0.122 4.122 5 C -0.084 4.084 6 Cl -0.055 7.055 7 C -0.066 4.066 8 C -0.086 4.086 9 C 0.304 3.696 10 O -0.475 6.475 11 N -0.144 5.144 12 C -0.482 4.482 13 H 0.111 0.889 14 C -0.158 4.158 15 N -0.481 5.481 16 Si 0.732 3.268 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.008 3.992 21 C -0.165 4.165 22 C 0.325 3.675 23 O -0.401 6.401 24 O -0.336 6.336 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.704 7.490 -2.717 8.414 hybrid contribution 0.702 -0.703 -0.788 1.268 sum -2.002 6.787 -3.505 7.897 Atomic orbital electron populations 1.20736 0.90573 1.01705 1.03150 1.20041 0.96559 0.91783 0.96417 1.20756 0.93114 0.97388 1.03490 1.20997 0.94137 0.96504 1.00561 1.20816 0.83935 0.95163 1.08532 1.98335 1.10999 1.98962 1.97222 1.21781 0.93706 0.97896 0.93207 1.19848 0.92959 0.93815 1.01937 1.18248 0.85401 0.84945 0.81043 1.90649 1.30165 1.83641 1.43025 1.43222 1.20645 1.12329 1.38160 1.19454 0.96918 1.02205 1.29639 0.88854 1.25439 0.97482 0.96312 0.96532 1.69920 1.36577 1.10514 1.31082 0.86186 0.80471 0.78904 0.81282 1.18747 1.20244 1.20322 1.21109 0.91422 0.90175 0.96538 1.21867 0.97703 0.92452 1.04465 1.23732 0.77750 0.90191 0.75797 1.90713 1.67496 1.40394 1.41482 1.84587 1.44866 1.44582 1.59555 0.90523 0.92514 0.91056 0.85495 0.85621 0.82105 0.91597 0.87245 0.91282 0.88400 0.87653 0.74049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.74 36.00 0.31 -1.32 16 2 C -0.05 -0.81 5.91 -104.21 -0.62 -1.42 16 3 C -0.13 -1.87 9.66 -39.64 -0.38 -2.26 16 4 C -0.10 -1.51 9.82 -39.45 -0.39 -1.90 16 5 C -0.06 -0.99 6.31 -39.56 -0.25 -1.24 16 6 Cl -0.08 -1.32 28.95 -51.86 -1.50 -2.83 16 7 C -0.05 -0.93 7.64 -39.13 -0.30 -1.23 16 8 C -0.08 -1.68 5.27 -104.97 -0.55 -2.23 16 9 C 0.51 11.87 6.54 -12.38 -0.08 11.79 16 10 O -0.59 -14.52 14.94 5.28 0.08 -14.44 16 11 N -0.43 -9.97 2.49 -115.92 -0.29 -10.26 16 12 C -0.35 -8.27 6.36 -15.00 -0.10 -8.37 16 13 H 0.09 2.15 6.68 -52.49 -0.35 1.80 16 14 C 0.05 1.21 4.95 -17.45 -0.09 1.12 16 15 N -0.85 -21.41 11.66 55.50 0.65 -20.76 16 16 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 17 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 20 C 0.13 2.98 4.24 -4.04 -0.02 2.97 16 21 C -0.13 -2.33 6.11 -27.88 -0.17 -2.50 16 22 C 0.48 8.45 8.33 36.01 0.30 8.75 16 23 O -0.51 -10.57 16.74 -18.75 -0.31 -10.89 16 24 O -0.52 -7.09 13.42 -39.26 -0.53 -7.62 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 27 H 0.07 1.22 6.93 -51.93 -0.36 0.86 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.16 3.52 6.34 -52.49 -0.33 3.19 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.11 2.71 5.76 -51.93 -0.30 2.41 16 33 H 0.07 1.69 7.44 -51.93 -0.39 1.31 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.40 3.53 9.10 45.56 0.41 3.94 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -28.75 328.14 -7.29 -36.04 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -2.98 Total: 10.05 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.32 Total: 2.17 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.36 Total: -31.02 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.76 Total: -32.95 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.75 -7.29 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600425322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.784 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds