Wall clock time and date at job start Tue Mar 31 2020 09:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38261 * 119.99550 * 2 1 4 4 C 1.38212 * 120.02500 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.01741 * 0.23454 * 4 3 2 6 6 C 1.38330 * 119.98469 * 359.46921 * 5 4 3 7 7 Cl 1.73597 * 120.01758 * 180.27399 * 6 5 4 8 8 C 1.38193 * 119.98939 * 179.97438 * 2 1 3 9 9 C 1.50702 * 120.00914 * 359.97438 * 8 2 1 10 10 C 1.50698 * 109.47235 * 90.00030 * 9 8 2 11 11 O 1.21294 * 120.00018 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99750 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99959 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99878 * 16.48769 * 13 12 10 15 15 C 1.38951 * 119.99982 * 196.48845 * 13 12 10 16 16 N 1.31401 * 119.99949 * 21.66291 * 15 13 12 17 17 Si 1.86801 * 119.99971 * 201.65904 * 15 13 12 18 18 H 1.48510 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47128 * 119.99965 * 17 15 13 20 20 H 1.48495 * 109.47381 * 240.00189 * 17 15 13 21 21 C 1.46501 * 120.00083 * 359.97438 * 12 10 9 22 22 C 1.50706 * 109.46968 * 84.08562 * 21 12 10 23 23 O 1.20832 * 119.99615 * 359.97438 * 22 21 12 24 24 O 1.34224 * 120.00011 * 180.02562 * 22 21 12 25 25 H 1.09004 * 109.47233 * 89.99830 * 1 2 3 26 26 H 1.09002 * 109.46859 * 209.99934 * 1 2 3 27 27 H 1.08999 * 109.46842 * 329.99912 * 1 2 3 28 28 H 1.07999 * 119.98537 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99046 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.01291 * 179.74364 * 5 4 3 31 31 H 1.09004 * 109.47012 * 210.00313 * 9 8 2 32 32 H 1.09005 * 109.46854 * 329.99645 * 9 8 2 33 33 H 0.97000 * 120.00246 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.46944 * 204.08104 * 21 12 10 35 35 H 1.08995 * 109.47182 * 324.08656 * 21 12 10 36 36 H 0.96701 * 116.99973 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1981 -0.0005 5 6 4.2726 0.0016 -0.0060 6 6 3.5816 -1.1968 0.0002 7 17 4.4500 -2.6999 0.0006 8 6 2.1978 -1.1969 0.0005 9 6 1.4443 -2.5020 0.0017 10 6 1.1925 -2.9380 -1.4187 11 8 1.5859 -2.2558 -2.3412 12 7 0.5294 -4.0855 -1.6639 13 6 0.2999 -4.4819 -2.9560 14 1 0.8622 -4.0389 -3.7647 15 6 -0.6561 -5.4536 -3.2252 16 7 -1.6164 -5.6881 -2.3595 17 14 -0.5763 -6.4265 -4.8179 18 1 0.5922 -5.9751 -5.6157 19 1 -0.4350 -7.8719 -4.5084 20 1 -1.8220 -6.2062 -5.5955 21 6 0.0539 -4.9091 -0.5495 22 6 -1.2772 -4.3880 -0.0720 23 8 -1.7769 -3.4269 -0.6073 24 8 -1.9070 -4.9909 0.9485 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6580 2.1326 0.0004 29 1 4.1198 2.1338 -0.0010 30 1 5.3525 0.0022 -0.0106 31 1 2.0336 -3.2613 0.5159 32 1 0.4921 -2.3713 0.5159 33 1 -2.2836 -6.3667 -2.5472 34 1 -0.0582 -5.9409 -0.8824 35 1 0.7747 -4.8669 0.2669 36 1 -2.7584 -4.6209 1.2191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600533364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:14 Heat of formation + Delta-G solvation = -97.664265 kcal Electronic energy + Delta-G solvation = -24222.957663 eV Core-core repulsion = 20505.471394 eV Total energy + Delta-G solvation = -3717.486269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87033 -39.16421 -37.91405 -36.21376 -35.27317 -34.52678 -33.10947 -31.88392 -31.43315 -28.02905 -27.53604 -26.54224 -24.51998 -21.97716 -21.26471 -20.90042 -18.87855 -17.21540 -16.92525 -16.43323 -16.23718 -16.03363 -15.52871 -15.02183 -14.68073 -14.47161 -14.04102 -13.56614 -13.48251 -13.31568 -12.82472 -12.55021 -12.38928 -12.20255 -12.06245 -11.75377 -11.61437 -11.48638 -11.10225 -11.02341 -10.97222 -10.75602 -10.47435 -10.45292 -10.36077 -10.25942 -9.66643 -9.05907 -8.69963 -8.38776 -8.28250 -7.91454 -6.45830 -3.88937 1.39766 1.48817 2.42031 3.12377 3.24342 3.31978 3.40658 3.63052 3.79487 4.08197 4.22986 4.73632 4.92448 4.94135 5.05469 5.12246 5.33906 5.45071 5.59018 5.65336 5.74679 5.81962 5.91243 6.00768 6.02967 6.16650 6.39275 6.43009 6.44703 6.54151 6.55923 6.79331 7.03851 7.44769 7.54382 7.98034 8.36709 8.98512 9.09073 9.30065 9.84386 10.63347 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.005242 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.520682 B = 5339.886277 C = 5915.784794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.018 4.018 7 Cl -0.071 7.071 8 C -0.038 4.038 9 C -0.111 4.111 10 C 0.474 3.526 11 O -0.564 6.564 12 N -0.433 5.433 13 C -0.301 4.301 14 H 0.108 0.892 15 C 0.028 3.972 16 N -0.883 5.883 17 Si 0.926 3.074 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.144 3.856 22 C 0.488 3.512 23 O -0.503 6.503 24 O -0.534 6.534 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.270 0.730 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 5.764 10.038 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.139 4.139 6 C -0.044 4.044 7 Cl -0.042 7.042 8 C -0.039 4.039 9 C -0.151 4.151 10 C 0.262 3.738 11 O -0.446 6.446 12 N -0.153 5.153 13 C -0.428 4.428 14 H 0.125 0.875 15 C -0.174 4.174 16 N -0.523 5.523 17 Si 0.753 3.247 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.209 1.209 21 C 0.017 3.983 22 C 0.328 3.672 23 O -0.388 6.388 24 O -0.345 6.345 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.877 5.948 9.267 12.481 hybrid contribution -0.849 -0.550 -0.582 1.167 sum 5.028 5.397 8.684 11.394 Atomic orbital electron populations 1.20856 0.90474 1.02389 1.03470 1.19706 0.96449 0.91803 0.97815 1.21018 0.94185 0.97415 1.01104 1.20949 0.94181 0.97244 1.00829 1.20891 0.99980 0.90772 1.02295 1.20713 0.91714 0.87129 1.04887 1.98346 1.76180 1.32870 1.96831 1.19097 0.91219 0.94869 0.98719 1.20828 1.00990 0.94758 0.98481 1.19649 0.83778 0.81164 0.89184 1.90552 1.55034 1.53187 1.45805 1.43410 1.48266 1.18206 1.05467 1.19739 1.19632 1.19625 0.83799 0.87463 1.25200 0.93781 0.98911 0.99482 1.69798 1.12121 1.32793 1.37603 0.85858 0.78415 0.79083 0.81336 1.19169 1.20566 1.20918 1.20694 0.88590 0.99313 0.89703 1.23880 0.87993 0.80274 0.75024 1.90610 1.66291 1.28035 1.53838 1.84531 1.37883 1.61140 1.50978 0.90183 0.91081 0.91779 0.85769 0.85567 0.85392 0.89022 0.88906 0.92001 0.85319 0.90572 0.75182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.61 36.01 0.35 -1.48 16 2 C -0.06 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.66 9.70 -39.58 -0.38 -2.04 16 4 C -0.11 -1.47 10.04 -39.59 -0.40 -1.86 16 5 C -0.12 -1.72 9.83 -39.55 -0.39 -2.10 16 6 C -0.02 -0.30 6.31 -39.50 -0.25 -0.55 16 7 Cl -0.07 -1.15 27.30 -51.86 -1.42 -2.57 16 8 C -0.04 -0.68 4.38 -104.59 -0.46 -1.14 16 9 C -0.11 -2.11 3.64 -29.03 -0.11 -2.22 16 10 C 0.47 11.41 7.41 -10.99 -0.08 11.32 16 11 O -0.56 -15.51 15.67 5.55 0.09 -15.43 16 12 N -0.43 -10.79 2.18 -116.10 -0.25 -11.04 16 13 C -0.30 -8.22 9.34 -14.93 -0.14 -8.36 16 14 H 0.11 3.11 7.37 -52.49 -0.39 2.72 16 15 C 0.03 0.74 4.87 -17.47 -0.09 0.65 16 16 N -0.88 -22.90 9.28 55.50 0.52 -22.38 16 17 Si 0.93 20.50 29.60 -169.99 -5.03 15.47 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.14 3.08 4.97 -5.19 -0.03 3.05 16 22 C 0.49 10.46 5.86 36.01 0.21 10.68 16 23 O -0.50 -12.51 16.79 -18.75 -0.31 -12.82 16 24 O -0.53 -9.25 13.42 -39.24 -0.53 -9.78 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.07 1.17 5.94 -51.93 -0.31 0.86 16 27 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.09 1.58 6.18 -51.93 -0.32 1.25 16 32 H 0.09 1.70 5.32 -51.93 -0.28 1.42 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.13 2.87 6.37 -51.93 -0.33 2.54 16 35 H 0.08 1.33 6.69 -51.93 -0.35 0.99 16 36 H 0.39 5.14 9.10 45.56 0.41 5.55 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -33.22 323.10 -7.25 -40.46 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.80 Total: 8.83 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.37 Total: 4.38 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.26 Total: -33.42 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.75 Total: -38.02 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.22 -7.25 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600533364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.201 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds