Wall clock time and date at job start Tue Mar 31 2020 09:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47067 * 270.00497 * 3 2 1 5 5 H 1.48502 * 109.46859 * 30.00007 * 3 2 1 6 6 H 1.48493 * 109.47032 * 150.00187 * 3 2 1 7 7 C 1.37878 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00548 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.53011 * 109.46777 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46579 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00435 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99897 * 179.97438 * 12 11 10 15 15 C 1.40010 * 120.00144 * 184.50524 * 14 12 11 16 16 C 1.38902 * 120.00195 * 325.27074 * 15 14 12 17 17 C 1.38281 * 120.25740 * 179.97438 * 16 15 14 18 18 C 1.37952 * 120.26315 * 359.68156 * 17 16 15 19 19 C 1.39686 * 119.99580 * 0.60066 * 18 17 16 20 20 C 1.47660 * 120.12832 * 179.69476 * 19 18 17 21 21 O 1.21475 * 120.00120 * 179.71919 * 20 19 18 22 22 O 1.34717 * 119.99805 * 359.45216 * 20 19 18 23 23 C 1.38754 * 120.00118 * 145.25563 * 15 14 12 24 24 Cl 1.73605 * 120.12843 * 0.04071 * 23 15 14 25 25 H 0.97000 * 120.00278 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47450 * 59.99186 * 9 7 2 27 27 H 1.09005 * 109.47220 * 299.99742 * 9 7 2 28 28 H 1.09000 * 109.47482 * 60.00147 * 10 9 7 29 29 H 1.09002 * 109.47079 * 299.99487 * 10 9 7 30 30 H 1.09000 * 109.46858 * 59.99932 * 11 10 9 31 31 H 1.08994 * 109.47220 * 299.99937 * 11 10 9 32 32 H 0.97003 * 120.00111 * 4.51057 * 14 12 11 33 33 H 1.07999 * 119.87430 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.86817 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.00471 * 180.29379 * 18 17 16 36 36 H 0.96706 * 116.99778 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5516 -2.6365 -0.0035 12 6 6.0539 -4.0573 -0.0040 13 8 5.2657 -4.9792 -0.0039 14 7 7.3789 -4.3036 -0.0056 15 6 7.8462 -5.6200 -0.1014 16 6 7.1372 -6.6539 0.4967 17 6 7.5936 -7.9560 0.4050 18 6 8.7531 -8.2392 -0.2866 19 6 9.4778 -7.2071 -0.8872 20 6 10.7229 -7.5061 -1.6225 21 8 11.3486 -6.6073 -2.1482 22 8 11.1678 -8.7749 -1.7058 23 6 9.0174 -5.8918 -0.7939 24 17 9.9067 -4.6021 -1.5421 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6804 0.8887 27 1 3.8745 -0.6801 -0.8912 28 1 3.6579 -3.1499 -0.8925 29 1 3.6586 -3.1510 0.8876 30 1 5.9156 -2.1231 0.8864 31 1 5.9142 -2.1222 -0.8935 32 1 8.0089 -3.5689 0.0596 33 1 6.2259 -6.4400 1.0354 34 1 7.0371 -8.7551 0.8721 35 1 9.1032 -9.2583 -0.3596 36 1 11.9872 -8.9214 -2.1979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:01 Heat of formation + Delta-G solvation = -109.028935 kcal Electronic energy + Delta-G solvation = -22131.260270 eV Core-core repulsion = 18413.281191 eV Total energy + Delta-G solvation = -3717.979078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07423 -40.30701 -38.64046 -36.84163 -36.35844 -35.12177 -34.40940 -32.21296 -31.55399 -30.35019 -28.28119 -25.27760 -24.33539 -22.66141 -22.11055 -20.49825 -19.97665 -18.82690 -18.03805 -17.27002 -16.88301 -16.55535 -16.11798 -16.09955 -15.88552 -15.18238 -14.68070 -14.37571 -13.96424 -13.89805 -13.64012 -13.42698 -12.69343 -12.58716 -12.32446 -12.06878 -11.95558 -11.84813 -11.74765 -11.70462 -11.06706 -10.83521 -10.76748 -10.38909 -10.11191 -9.93562 -9.76172 -9.60324 -9.33028 -9.18382 -8.55633 -8.53882 -6.03621 -4.01857 0.17410 0.67293 1.69849 2.11936 2.41452 2.57073 2.87938 3.26642 3.29791 3.37227 3.39269 4.34623 4.44475 4.45763 4.60406 4.66121 4.87099 4.98194 5.28177 5.29478 5.40485 5.44590 5.55647 5.67808 5.87633 5.95645 6.02304 6.05905 6.40877 6.46581 6.59197 6.84835 7.09867 7.30648 7.39388 7.49174 7.78712 7.98758 8.55199 9.02603 9.58175 11.09955 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.002587 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.398651 B =10820.213400 C =11582.675249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.517 3.483 13 O -0.512 6.512 14 N -0.679 5.679 15 C 0.153 3.847 16 C -0.075 4.075 17 C -0.110 4.110 18 C -0.069 4.069 19 C -0.108 4.108 20 C 0.523 3.477 21 O -0.492 6.492 22 O -0.512 6.512 23 C -0.017 4.017 24 Cl -0.026 7.026 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.414 0.586 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.777 -16.628 0.126 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.180 4.180 12 C 0.307 3.693 13 O -0.385 6.385 14 N -0.326 5.326 15 C 0.057 3.943 16 C -0.095 4.095 17 C -0.128 4.128 18 C -0.088 4.088 19 C -0.111 4.111 20 C 0.366 3.634 21 O -0.379 6.379 22 O -0.325 6.325 23 C -0.047 4.047 24 Cl 0.004 6.996 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 23.872 -16.643 0.118 29.101 hybrid contribution 1.351 1.327 -0.454 1.947 sum 25.222 -15.317 -0.336 29.511 Atomic orbital electron populations 1.69921 1.06311 1.26850 1.51167 1.25054 0.94751 0.99175 0.94651 0.86762 0.80301 0.83636 0.78451 1.20331 1.21430 1.19036 1.21136 0.89438 0.94557 1.50666 0.90915 1.19606 0.97413 0.91945 0.96228 1.21304 0.88645 0.99910 1.02729 1.21935 1.01053 0.90612 1.04408 1.21505 0.80375 0.93412 0.73985 1.90689 1.54799 1.46391 1.46626 1.43851 1.08921 1.05973 1.73852 1.17385 0.93094 0.86617 0.97190 1.21715 1.00110 0.91396 0.96312 1.21217 0.95925 0.96744 0.98946 1.21429 0.93862 0.98861 0.94666 1.18533 0.95698 0.92202 1.04657 1.20598 0.84590 0.80328 0.77842 1.90994 1.56872 1.46357 1.43706 1.84527 1.45940 1.30059 1.71936 1.20825 0.95407 0.89520 0.98950 1.98420 1.73864 1.47590 1.79770 0.92749 0.96568 0.97014 0.91901 0.91859 0.88697 0.88658 0.74851 0.82380 0.83912 0.83522 0.72530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.70 4.44 -26.73 -0.12 -1.82 16 11 C -0.14 -1.97 5.70 -27.88 -0.16 -2.13 16 12 C 0.52 7.20 7.67 -10.99 -0.08 7.12 16 13 O -0.51 -8.70 13.39 5.55 0.07 -8.63 16 14 N -0.68 -7.56 5.05 -9.86 -0.05 -7.61 16 15 C 0.15 1.74 6.30 -83.68 -0.53 1.22 16 16 C -0.07 -0.80 8.69 -39.32 -0.34 -1.15 16 17 C -0.11 -0.89 10.02 -39.67 -0.40 -1.29 16 18 C -0.07 -0.54 9.61 -39.15 -0.38 -0.92 16 19 C -0.11 -1.08 5.87 -104.98 -0.62 -1.69 16 20 C 0.52 5.02 8.26 34.58 0.29 5.31 16 21 O -0.49 -5.94 14.75 -19.25 -0.28 -6.23 16 22 O -0.51 -3.14 12.68 -40.54 -0.51 -3.66 16 23 C -0.02 -0.19 6.37 -38.86 -0.25 -0.44 16 24 Cl -0.03 -0.29 25.02 -51.86 -1.30 -1.59 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 29 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.41 3.65 8.07 -40.82 -0.33 3.32 16 33 H 0.16 1.87 6.19 -52.49 -0.32 1.55 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.15 0.82 7.61 -52.49 -0.40 0.42 16 36 H 0.42 0.74 9.11 45.56 0.42 1.15 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -35.18 327.78 -7.25 -42.43 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.10 Total: 0.42 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.13 Total: -9.63 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.72 Total: -34.84 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.72 Total: -18.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.30 Total: -1.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.18 -7.25 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.598 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds