Wall clock time and date at job start Tue Mar 31 2020 09:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47340 * 270.00229 * 3 2 1 5 5 H 1.48507 * 109.47228 * 30.00338 * 3 2 1 6 6 H 1.48500 * 109.47083 * 149.99820 * 3 2 1 7 7 C 1.37874 * 120.00587 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46824 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46499 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00280 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.40003 * 120.00445 * 185.27267 * 14 12 11 16 16 C 1.39026 * 119.98298 * 213.26664 * 15 14 12 17 17 C 1.38160 * 120.25962 * 180.02562 * 16 15 14 18 18 C 1.38169 * 120.21861 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.02755 * 179.97438 * 18 17 16 20 20 C 1.39754 * 119.94844 * 359.97438 * 18 17 16 21 21 C 1.47664 * 120.12817 * 180.02562 * 20 18 17 22 22 O 1.21478 * 119.99745 * 359.72356 * 21 20 18 23 23 O 1.34714 * 120.00058 * 180.02562 * 21 20 18 24 24 C 1.38529 * 119.97391 * 33.51738 * 15 14 12 25 25 H 0.96994 * 120.00454 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47535 * 59.99345 * 9 7 2 27 27 H 1.09000 * 109.47229 * 299.99832 * 9 7 2 28 28 H 1.08999 * 109.46823 * 60.00349 * 10 9 7 29 29 H 1.08992 * 109.47081 * 299.99590 * 10 9 7 30 30 H 1.08991 * 109.47104 * 60.00330 * 11 10 9 31 31 H 1.08992 * 109.47104 * 299.99756 * 11 10 9 32 32 H 0.97004 * 119.99994 * 5.27636 * 14 12 11 33 33 H 1.08004 * 119.86741 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.88909 * 179.97438 * 17 16 15 35 35 H 0.96699 * 117.00117 * 179.97438 * 23 21 20 36 36 H 1.07999 * 120.11097 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4599 -6.1324 0.0018 13 8 3.6524 -5.9107 0.0013 14 7 2.0108 -7.4031 0.0030 15 6 2.9158 -8.4655 0.1150 16 6 2.6586 -9.6684 -0.5327 17 6 3.5475 -10.7207 -0.4257 18 6 4.6990 -10.5846 0.3258 19 17 5.8121 -11.9102 0.4574 20 6 4.9669 -9.3789 0.9797 21 6 6.1966 -9.2289 1.7833 22 8 6.9751 -10.1562 1.8811 23 8 6.4520 -8.0657 2.4130 24 6 4.0644 -8.3189 0.8754 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8906 29 1 2.8721 -3.6042 -0.8894 30 1 0.8537 -5.0451 -0.8885 31 1 0.8542 -5.0446 0.8913 32 1 1.0604 -7.5817 -0.0739 33 1 1.7600 -9.7811 -1.1212 34 1 3.3415 -11.6527 -0.9310 35 1 7.2692 -8.0152 2.9275 36 1 4.2634 -7.3861 1.3820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065203.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:05 Heat of formation + Delta-G solvation = -113.843893 kcal Electronic energy + Delta-G solvation = -22095.015035 eV Core-core repulsion = 18376.827164 eV Total energy + Delta-G solvation = -3718.187870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.01079 -40.13977 -38.63630 -36.79379 -36.18097 -34.85590 -34.30567 -32.16452 -31.90833 -30.01686 -27.77423 -25.17292 -24.35917 -23.10810 -21.64717 -20.63650 -19.96685 -18.68390 -17.92267 -17.10623 -16.92837 -16.27825 -16.03319 -15.96195 -15.78102 -15.15510 -14.47493 -14.41907 -13.86626 -13.82824 -13.56772 -13.33395 -12.74582 -12.39658 -12.31337 -11.99153 -11.85671 -11.71997 -11.70070 -11.46240 -10.85523 -10.71175 -10.57962 -10.46349 -10.22300 -9.94536 -9.75717 -9.54884 -9.37465 -9.09619 -8.42215 -8.36437 -6.02151 -4.03820 0.18701 0.75478 1.81299 2.15870 2.60840 2.69311 2.87536 3.31163 3.32157 3.38299 3.42851 4.24595 4.45482 4.49623 4.65150 4.80004 4.91847 5.00873 5.34213 5.36693 5.48014 5.52698 5.54504 5.69179 5.79311 5.92087 6.10340 6.24974 6.45794 6.61203 6.81427 7.06585 7.17008 7.64446 7.67128 7.76082 7.97704 8.06068 8.41200 9.03195 9.60615 11.09301 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002446 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.483753 B =11442.323145 C =12341.452623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.137 4.137 12 C 0.512 3.488 13 O -0.510 6.510 14 N -0.682 5.682 15 C 0.149 3.851 16 C -0.103 4.103 17 C -0.102 4.102 18 C -0.005 4.005 19 Cl -0.035 7.035 20 C -0.102 4.102 21 C 0.524 3.476 22 O -0.495 6.495 23 O -0.505 6.505 24 C -0.056 4.056 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.415 0.585 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.416 0.584 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -24.401 1.187 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.176 4.176 12 C 0.302 3.698 13 O -0.384 6.384 14 N -0.329 5.329 15 C 0.053 3.947 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.033 4.033 19 Cl -0.006 7.006 20 C -0.105 4.105 21 C 0.367 3.633 22 O -0.383 6.383 23 O -0.317 6.317 24 C -0.076 4.076 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.252 0.748 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.275 0.725 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.886 -24.408 1.019 24.913 hybrid contribution 0.476 0.764 0.223 0.928 sum 5.362 -23.643 1.242 24.275 Atomic orbital electron populations 1.69951 1.06044 1.26624 1.51084 1.25014 0.94858 0.99285 0.95313 0.86593 0.79911 0.83380 0.78133 1.20661 1.21242 1.19810 1.21252 0.93199 0.90965 1.50333 0.92547 1.19127 0.93916 0.91398 0.97200 1.21490 0.98754 0.91305 1.01922 1.21902 0.97951 0.93463 1.04326 1.21651 0.90878 0.83253 0.74060 1.90727 1.17175 1.84176 1.46277 1.43903 1.10107 1.04841 1.74028 1.17764 0.92293 0.88583 0.96028 1.21153 1.00713 0.92090 0.98470 1.20798 0.92195 1.00071 0.99036 1.20940 0.93397 0.89299 0.99634 1.98415 1.60987 1.44562 1.96598 1.18675 0.95198 0.94167 1.02455 1.20580 0.85428 0.79995 0.77280 1.90974 1.47801 1.40016 1.59508 1.84604 1.47452 1.37521 1.62140 1.21543 0.92118 0.98742 0.95231 0.93019 0.96564 0.96522 0.92480 0.92516 0.88816 0.88677 0.74845 0.83876 0.83557 0.72508 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.93 4.44 -26.73 -0.12 -2.05 16 11 C -0.14 -1.95 5.70 -27.88 -0.16 -2.11 16 12 C 0.51 7.05 7.56 -10.99 -0.08 6.97 16 13 O -0.51 -8.99 13.68 5.55 0.08 -8.91 16 14 N -0.68 -6.65 5.34 -9.89 -0.05 -6.71 16 15 C 0.15 1.53 6.27 -83.73 -0.53 1.01 16 16 C -0.10 -0.79 9.95 -39.32 -0.39 -1.18 16 17 C -0.10 -0.81 9.81 -39.64 -0.39 -1.20 16 18 C 0.00 -0.05 6.35 -39.04 -0.25 -0.30 16 19 Cl -0.04 -0.38 26.01 -51.86 -1.35 -1.73 16 20 C -0.10 -1.22 5.87 -104.97 -0.62 -1.84 16 21 C 0.52 6.39 8.26 34.58 0.29 6.68 16 22 O -0.49 -6.76 14.74 -19.25 -0.28 -7.05 16 23 O -0.51 -5.18 12.68 -40.53 -0.51 -5.70 16 24 C -0.06 -0.68 8.22 -38.96 -0.32 -1.00 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.19 8.10 -51.93 -0.42 0.76 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.41 2.51 8.82 -40.82 -0.36 2.15 16 33 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 34 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.42 2.25 9.11 45.56 0.42 2.67 16 36 H 0.16 2.25 5.97 -52.49 -0.31 1.93 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -35.03 333.42 -7.68 -42.71 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.18 Total: -0.41 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.11 Total: -8.05 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.68 Total: -32.46 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.72 Total: -21.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.35 Total: -1.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.03 -7.68 -42.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065203.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.138 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds