Wall clock time and date at job start Tue Mar 31 2020 09:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48504 * 109.47288 * 274.57280 * 3 2 1 5 5 H 1.48506 * 109.47201 * 34.57384 * 3 2 1 6 6 H 1.48500 * 109.47067 * 154.57297 * 3 2 1 7 7 C 1.39051 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99832 * 20.18238 * 7 2 1 9 9 N 1.36876 * 119.99708 * 200.17919 * 7 2 1 10 10 C 1.46497 * 119.99858 * 51.60886 * 9 7 2 11 11 C 1.52995 * 109.46984 * 95.11694 * 10 9 7 12 12 C 1.50697 * 109.47167 * 175.36671 * 11 10 9 13 13 O 1.20825 * 120.00297 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00120 * 179.97438 * 12 11 10 15 15 C 1.34774 * 119.99510 * 231.60706 * 9 7 2 16 16 O 1.21591 * 119.99687 * 177.96361 * 15 9 7 17 17 C 1.47726 * 120.00300 * 357.96879 * 15 9 7 18 18 C 1.39660 * 120.15408 * 40.42895 * 17 15 9 19 19 C 1.37919 * 119.85001 * 179.72671 * 18 17 15 20 20 C 1.38393 * 120.14682 * 0.57725 * 19 18 17 21 21 C 1.38359 * 120.30658 * 359.69509 * 20 19 18 22 22 C 1.50698 * 119.92212 * 180.02562 * 21 20 19 23 23 Cl 1.80302 * 109.47340 * 269.97924 * 22 21 20 24 24 C 1.37955 * 120.15165 * 0.02562 * 21 20 19 25 25 H 0.97000 * 120.00051 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47305 * 335.11317 * 10 9 7 27 27 H 1.09004 * 109.46460 * 215.11316 * 10 9 7 28 28 H 1.08999 * 109.47258 * 295.37031 * 11 10 9 29 29 H 1.08998 * 109.47412 * 55.36985 * 11 10 9 30 30 H 0.96707 * 117.00349 * 180.02562 * 14 12 11 31 31 H 1.08007 * 120.07584 * 0.02562 * 18 17 15 32 32 H 1.07997 * 119.92506 * 180.29485 * 19 18 17 33 33 H 1.07996 * 119.84745 * 179.72557 * 20 19 18 34 34 H 1.08997 * 109.47617 * 29.98280 * 22 21 20 35 35 H 1.09003 * 109.47176 * 149.97812 * 22 21 20 36 36 H 1.07999 * 120.07457 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3984 2.1023 -1.3956 5 1 1.4967 2.6229 0.7945 6 1 3.5901 1.4142 0.6011 7 6 2.0089 -1.2042 -0.0005 8 1 1.5186 -2.1107 -0.3236 9 7 3.3147 -1.2407 0.4084 10 6 3.6953 -0.6564 1.6967 11 6 3.7137 -1.7496 2.7669 12 6 4.2145 -1.1725 4.0659 13 8 4.5244 -0.0064 4.1293 14 8 4.3153 -1.9537 5.1527 15 6 4.2500 -1.8142 -0.3743 16 8 5.4157 -1.8139 -0.0283 17 6 3.8592 -2.4431 -1.6526 18 6 2.9058 -1.8340 -2.4715 19 6 2.5497 -2.4238 -3.6663 20 6 3.1260 -3.6225 -4.0487 21 6 4.0670 -4.2343 -3.2396 22 6 4.6894 -5.5392 -3.6647 23 17 3.7002 -6.9097 -3.0370 24 6 4.4366 -3.6524 -2.0446 25 1 -0.4850 0.8400 0.0004 26 1 2.9740 0.1120 1.9745 27 1 4.6870 -0.2113 1.6149 28 1 2.7050 -2.1381 2.9068 29 1 4.3734 -2.5573 2.4500 30 1 4.6412 -1.5387 5.9631 31 1 2.4520 -0.9007 -2.1722 32 1 1.8161 -1.9514 -4.3028 33 1 2.8403 -4.0823 -4.9832 34 1 4.7267 -5.5866 -4.7530 35 1 5.7006 -5.6072 -3.2634 36 1 5.1715 -4.1308 -1.4142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:19 Heat of formation + Delta-G solvation = -109.645888 kcal Electronic energy + Delta-G solvation = -23346.752066 eV Core-core repulsion = 19628.746235 eV Total energy + Delta-G solvation = -3718.005831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08813 -39.56145 -38.02535 -35.98702 -35.83056 -35.19945 -32.61024 -32.16215 -31.08746 -30.21973 -26.48764 -25.15040 -24.98668 -22.53853 -21.33214 -20.78377 -19.26855 -17.97685 -17.43502 -16.43040 -16.17999 -15.90556 -15.59842 -15.33144 -14.76388 -14.60866 -14.32674 -14.02772 -13.63093 -13.21293 -13.16095 -13.00347 -12.76046 -12.65543 -12.35820 -11.97544 -11.74595 -11.32173 -11.29592 -11.17522 -10.90535 -10.83387 -10.40278 -10.35950 -10.31624 -10.27444 -10.00106 -9.40216 -8.83414 -8.49834 -8.33343 -7.84271 -6.63032 -4.36454 1.38468 1.62042 2.48370 2.60364 3.03562 3.16072 3.19868 3.26988 3.59396 4.03605 4.21102 4.38309 4.73559 4.75028 4.88314 5.25820 5.33300 5.38092 5.42964 5.50911 5.69434 5.77184 5.92265 5.95415 6.04704 6.27513 6.35217 6.39180 6.52558 6.71580 6.74707 6.91490 7.02152 7.22493 7.35667 7.90078 8.12050 8.14096 8.78212 9.10711 9.47012 10.44843 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004877 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.303435 B = 5739.686028 C = 7148.048300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.078 3.922 3 Si 0.851 3.149 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.357 4.357 8 H 0.104 0.896 9 N -0.458 5.458 10 C 0.126 3.874 11 C -0.125 4.125 12 C 0.485 3.515 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.527 3.473 16 O -0.585 6.585 17 C -0.098 4.098 18 C -0.039 4.039 19 C -0.140 4.140 20 C -0.089 4.089 21 C -0.135 4.135 22 C 0.019 3.981 23 Cl -0.187 7.187 24 C -0.058 4.058 25 H 0.278 0.722 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.403 0.597 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -6.564 -3.311 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.132 4.132 3 Si 0.675 3.325 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.483 4.483 8 H 0.121 0.879 9 N -0.178 5.178 10 C 0.002 3.998 11 C -0.164 4.164 12 C 0.328 3.672 13 O -0.408 6.408 14 O -0.332 6.332 15 C 0.318 3.682 16 O -0.470 6.470 17 C -0.101 4.101 18 C -0.057 4.057 19 C -0.158 4.158 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.043 4.043 23 Cl -0.160 7.160 24 C -0.077 4.077 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.261 0.739 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.235 -6.402 -3.411 8.946 hybrid contribution 0.185 1.122 0.637 1.303 sum 5.420 -5.281 -2.774 8.060 Atomic orbital electron populations 1.69742 1.06368 1.28532 1.43386 1.25491 0.94970 0.98509 0.94196 0.87264 0.82156 0.83668 0.79410 1.19750 1.20383 1.17172 1.18969 0.84977 0.96349 1.48042 0.87874 1.43483 1.08001 1.52511 1.13763 1.21493 1.01740 0.93552 0.82967 1.21814 1.04232 1.01869 0.88498 1.23709 0.73602 0.84391 0.85521 1.90697 1.46475 1.18487 1.85155 1.84585 1.79721 1.46924 1.21965 1.18554 0.84773 0.81170 0.83745 1.90664 1.18534 1.63007 1.74780 1.19824 0.98364 0.95988 0.95878 1.21919 0.91742 1.00625 0.91413 1.21109 1.01097 0.96275 0.97299 1.21026 0.95398 0.95407 0.98885 1.19417 1.01170 0.96122 0.96785 1.23095 0.95590 0.84662 1.00998 1.98730 1.75667 1.51748 1.89900 1.20957 0.97946 0.94050 0.94783 0.91196 0.90316 0.90540 0.86903 0.87651 0.73872 0.83251 0.85848 0.86409 0.88408 0.88330 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.64 13.95 55.50 0.77 -20.87 16 2 C 0.08 1.90 4.82 -17.45 -0.08 1.81 16 3 Si 0.85 19.06 26.55 -169.99 -4.51 14.54 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.25 -5.64 5.47 56.52 0.31 -5.33 16 7 C -0.36 -8.43 6.41 -15.00 -0.10 -8.53 16 8 H 0.10 2.63 7.56 -52.49 -0.40 2.24 16 9 N -0.46 -10.26 1.88 -115.93 -0.22 -10.48 16 10 C 0.13 2.68 2.73 -4.05 -0.01 2.67 16 11 C -0.13 -2.25 6.10 -27.89 -0.17 -2.42 16 12 C 0.49 8.15 8.33 36.00 0.30 8.45 16 13 O -0.52 -10.16 16.68 -18.75 -0.31 -10.48 16 14 O -0.52 -6.82 13.42 -39.25 -0.53 -7.35 16 15 C 0.53 11.76 7.27 -12.38 -0.09 11.67 16 16 O -0.59 -14.03 16.59 5.29 0.09 -13.94 16 17 C -0.10 -1.93 5.35 -104.97 -0.56 -2.49 16 18 C -0.04 -0.73 8.13 -39.17 -0.32 -1.04 16 19 C -0.14 -2.19 10.03 -39.64 -0.40 -2.59 16 20 C -0.09 -1.23 9.69 -39.48 -0.38 -1.61 16 21 C -0.13 -1.92 5.25 -104.68 -0.55 -2.47 16 22 C 0.02 0.21 6.78 36.00 0.24 0.45 16 23 Cl -0.19 -2.40 29.13 -51.86 -1.51 -3.91 16 24 C -0.06 -0.99 9.30 -39.17 -0.36 -1.35 16 25 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.08 1.73 5.38 -51.93 -0.28 1.45 16 27 H 0.08 1.72 7.25 -51.93 -0.38 1.34 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.40 3.34 9.10 45.56 0.41 3.76 16 31 H 0.15 3.08 5.99 -52.48 -0.31 2.77 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -29.35 328.29 -6.89 -36.24 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.13 Total: 8.75 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.48 Total: 2.55 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.56 Total: -31.35 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.75 Total: -31.77 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.51 Total: 14.54 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -1.51 Total: -3.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.35 -6.89 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.408 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds