Wall clock time and date at job start Tue Mar 31 2020 09:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99998 * 2 1 4 4 C 1.39188 * 119.93198 * 0.02562 * 3 2 1 5 5 C 1.38006 * 120.33061 * 179.74377 * 4 3 2 6 6 C 1.38679 * 120.17321 * 0.51459 * 5 4 3 7 7 O 1.35754 * 120.06860 * 179.74331 * 6 5 4 8 8 C 1.40157 * 119.85397 * 359.46831 * 6 5 4 9 9 C 1.47440 * 120.15638 * 180.29622 * 8 6 5 10 10 O 1.21619 * 120.00254 * 322.27104 * 9 8 6 11 11 N 1.34779 * 119.99691 * 142.27263 * 9 8 6 12 12 C 1.36909 * 119.99874 * 186.41001 * 11 9 8 13 13 H 1.07997 * 119.99865 * 347.03028 * 12 11 9 14 14 C 1.39019 * 119.99765 * 167.02721 * 12 11 9 15 15 N 1.31381 * 120.00114 * 31.94115 * 14 12 11 16 16 Si 1.86798 * 119.99763 * 211.93250 * 14 12 11 17 17 H 1.48498 * 109.47134 * 60.00559 * 16 14 12 18 18 H 1.48502 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47493 * 300.00610 * 16 14 12 20 20 C 1.46495 * 120.00506 * 6.41201 * 11 9 8 21 21 C 1.50707 * 109.47300 * 107.03807 * 20 11 9 22 22 O 1.20823 * 119.99779 * 0.02562 * 21 20 11 23 23 O 1.34223 * 120.00242 * 180.02562 * 21 20 11 24 24 C 1.38450 * 119.93092 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.47280 * 300.00035 * 1 2 3 26 26 H 1.09006 * 109.46990 * 60.00293 * 1 2 3 27 27 H 1.09003 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.83674 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91610 * 180.27762 * 5 4 3 30 30 H 0.96699 * 113.99631 * 269.72176 * 7 6 5 31 31 H 0.97000 * 120.00283 * 179.97438 * 15 14 12 32 32 H 1.09001 * 109.47870 * 227.04092 * 20 11 9 33 33 H 1.09008 * 109.47091 * 347.04143 * 20 11 9 34 34 H 0.96698 * 117.00511 * 180.02562 * 23 21 20 35 35 H 1.08006 * 120.09256 * 0.03016 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1913 2.6649 0.0005 5 6 1.4924 4.0117 0.0059 6 6 2.8144 4.4304 0.0000 7 8 3.1081 5.7558 0.0000 8 6 3.8466 3.4822 -0.0002 9 6 5.2545 3.9199 0.0002 10 8 5.5880 4.8961 -0.6440 11 7 6.1719 3.2382 0.7144 12 6 7.4500 3.7173 0.8217 13 1 7.7834 4.5157 0.1754 14 6 8.3184 3.1759 1.7626 15 7 8.2221 1.9079 2.0925 16 14 9.6224 4.2515 2.5576 17 1 8.9675 5.3731 3.2775 18 1 10.4141 3.4415 3.5181 19 1 10.5228 4.7948 1.5091 20 6 5.8017 1.9846 1.3758 21 6 6.4158 0.8250 0.6345 22 8 7.0936 1.0253 -0.3455 23 8 6.2099 -0.4302 1.0629 24 6 3.5348 2.1200 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.1597 2.3449 0.0014 29 1 0.6963 4.7415 0.0108 30 1 3.1932 6.1397 -0.8835 31 1 8.8283 1.5301 2.7488 32 1 6.1671 1.9938 2.4027 33 1 4.7166 1.8812 1.3772 34 1 6.6245 -1.1411 0.5551 35 1 4.3251 1.3837 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607409431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:39 Heat of formation + Delta-G solvation = -99.202733 kcal Electronic energy + Delta-G solvation = -24230.487585 eV Core-core repulsion = 20514.978309 eV Total energy + Delta-G solvation = -3715.509276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22419 -38.98453 -37.66556 -36.42691 -35.21546 -34.43713 -32.35439 -30.94611 -29.93461 -28.88101 -27.77924 -25.31855 -23.02690 -22.56120 -21.07267 -19.92952 -18.01667 -17.40728 -17.10865 -16.86931 -16.32951 -15.61128 -15.56523 -15.35240 -14.76221 -14.61759 -14.43769 -14.06094 -13.90247 -13.59900 -13.31099 -13.00920 -12.76665 -12.49761 -12.20148 -12.01384 -11.83736 -11.61382 -11.39993 -10.86624 -10.54974 -10.42000 -10.35988 -10.32873 -10.13891 -9.52474 -9.34478 -8.93846 -8.85512 -8.51677 -8.15450 -7.28221 -6.66676 -3.85797 1.08839 1.29045 1.50069 2.38867 3.11138 3.21028 3.25508 3.35588 3.46520 3.89410 3.98444 4.25368 4.47626 4.60816 4.88775 4.89876 4.90667 4.99589 5.07344 5.34527 5.45689 5.53989 5.77120 5.82612 5.97332 6.16805 6.22883 6.41711 6.55731 6.63258 6.77241 7.41726 7.54400 7.88084 8.01680 8.26440 8.97556 9.05097 9.19433 9.74408 10.41937 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.005787 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.325033 B = 4837.398132 C = 6232.178808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.112 6.112 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.133 4.133 6 C 0.146 3.854 7 O -0.483 6.483 8 C -0.105 4.105 9 C 0.486 3.514 10 O -0.570 6.570 11 N -0.413 5.413 12 C -0.297 4.297 13 H 0.115 0.885 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.926 3.074 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.110 3.890 21 C 0.496 3.504 22 O -0.503 6.503 23 O -0.531 6.531 24 C -0.078 4.078 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.395 0.605 31 H 0.277 0.723 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.392 0.608 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.807 -4.714 -0.388 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.129 5.871 3 C -0.213 4.213 4 C -0.140 4.140 5 C -0.153 4.153 6 C 0.097 3.903 7 O -0.294 6.294 8 C -0.111 4.111 9 C 0.276 3.724 10 O -0.455 6.455 11 N -0.130 5.130 12 C -0.424 4.424 13 H 0.132 0.868 14 C -0.165 4.165 15 N -0.503 5.503 16 Si 0.751 3.249 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.015 4.015 21 C 0.337 3.663 22 O -0.388 6.388 23 O -0.341 6.341 24 C -0.103 4.103 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.252 0.748 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.249 0.751 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.846 -5.105 -0.021 14.757 hybrid contribution 0.301 0.819 -0.332 0.933 sum -13.545 -4.286 -0.352 14.211 Atomic orbital electron populations 1.23665 0.95463 1.06877 1.05513 1.85656 1.05523 1.02910 1.92982 1.21507 0.96188 0.96645 1.06963 1.20984 0.97953 0.92421 1.02647 1.21199 0.95674 0.95715 1.02703 1.18375 0.90333 0.83740 0.97876 1.84700 1.92554 1.18398 1.33706 1.20674 0.95615 0.92730 1.02112 1.17345 0.83804 0.86527 0.84762 1.90604 1.80412 1.29672 1.44776 1.43446 1.09964 1.16511 1.43105 1.19673 0.87500 1.17693 1.17508 0.86781 1.25289 0.98993 0.95275 0.96944 1.69777 1.38928 1.10249 1.31360 0.85999 0.79518 0.80158 0.79222 1.19535 1.20910 1.19564 1.21710 0.98794 0.81571 0.99473 1.23362 0.78321 0.82585 0.82081 1.90617 1.36072 1.84668 1.27484 1.84518 1.72308 1.17550 1.59771 1.21205 0.94787 0.95184 0.99085 0.89776 0.89888 0.87560 0.85572 0.84892 0.74771 0.91239 0.85538 0.88313 0.75148 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.14 101.05 0.92 -0.25 16 2 S -0.11 -1.43 22.55 -107.50 -2.42 -3.85 16 3 C -0.10 -1.53 6.10 -39.15 -0.24 -1.77 16 4 C -0.12 -1.51 9.35 -39.31 -0.37 -1.87 16 5 C -0.13 -1.84 9.97 -39.50 -0.39 -2.23 16 6 C 0.15 2.58 6.68 -38.70 -0.26 2.32 16 7 O -0.48 -8.53 12.20 -35.91 -0.44 -8.97 16 8 C -0.11 -2.16 5.43 -104.87 -0.57 -2.73 16 9 C 0.49 12.27 7.15 -12.51 -0.09 12.18 16 10 O -0.57 -15.77 15.65 -11.68 -0.18 -15.96 16 11 N -0.41 -10.75 2.36 -117.31 -0.28 -11.03 16 12 C -0.30 -8.31 8.62 -14.99 -0.13 -8.44 16 13 H 0.11 3.37 7.38 -52.49 -0.39 2.98 16 14 C 0.04 1.03 5.11 -17.45 -0.09 0.94 16 15 N -0.86 -22.23 8.64 55.50 0.48 -21.75 16 16 Si 0.93 20.54 29.65 -169.99 -5.04 15.50 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 20 C 0.11 2.52 4.84 -5.19 -0.03 2.49 16 21 C 0.50 11.44 4.74 36.01 0.17 11.62 16 22 O -0.50 -13.51 16.38 -18.75 -0.31 -13.81 16 23 O -0.53 -9.97 13.42 -39.24 -0.53 -10.50 16 24 C -0.08 -1.45 7.09 -38.94 -0.28 -1.72 16 25 H 0.08 0.60 7.74 -51.93 -0.40 0.20 16 26 H 0.08 0.59 7.74 -51.92 -0.40 0.19 16 27 H 0.11 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.13 1.22 5.84 -52.48 -0.31 0.91 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.39 5.56 9.06 45.56 0.41 5.98 16 31 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.13 2.99 6.36 -51.93 -0.33 2.66 16 33 H 0.10 2.01 3.83 -51.92 -0.20 1.82 16 34 H 0.39 5.72 9.10 45.56 0.41 6.13 16 35 H 0.14 2.73 4.43 -52.48 -0.23 2.50 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -34.28 312.38 -6.76 -41.04 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -1.41 Total: 14.10 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -1.34 Total: 10.53 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.20 Total: -32.77 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.45 Total: -49.24 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.42 Total: -3.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.28 -6.76 -41.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607409431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.161 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds