Wall clock time and date at job start Tue Mar 31 2020 09:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00147 * 2 1 4 4 H 1.48499 * 109.47159 * 269.99987 * 3 2 1 5 5 H 1.48503 * 109.47263 * 30.00285 * 3 2 1 6 6 H 1.48504 * 109.47213 * 150.00079 * 3 2 1 7 7 C 1.37881 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99551 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47498 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47376 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99781 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99933 * 180.02562 * 12 11 10 15 15 C 1.39957 * 120.00029 * 185.27705 * 14 12 11 16 16 C 1.38974 * 119.98580 * 213.34428 * 15 14 12 17 17 C 1.38329 * 120.21984 * 180.02562 * 16 15 14 18 18 Cl 1.73598 * 119.90254 * 179.97438 * 17 16 15 19 19 C 1.38137 * 120.20043 * 359.73538 * 17 16 15 20 20 C 1.39616 * 119.97438 * 0.51349 * 19 17 16 21 21 C 1.47742 * 120.11126 * 179.76408 * 20 19 17 22 22 O 1.21465 * 120.00169 * 179.72441 * 21 20 19 23 23 O 1.34713 * 119.99836 * 359.72790 * 21 20 19 24 24 C 1.38584 * 119.98869 * 33.35548 * 15 14 12 25 25 H 0.97004 * 119.99423 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47010 * 59.99342 * 9 7 2 27 27 H 1.09009 * 109.46709 * 299.99699 * 9 7 2 28 28 H 1.09003 * 109.47291 * 59.99391 * 10 9 7 29 29 H 1.09001 * 109.47293 * 299.99842 * 10 9 7 30 30 H 1.09003 * 109.47087 * 59.99584 * 11 10 9 31 31 H 1.09001 * 109.46979 * 300.00352 * 11 10 9 32 32 H 0.97000 * 119.99809 * 5.26927 * 14 12 11 33 33 H 1.08000 * 119.88998 * 359.97438 * 16 15 14 34 34 H 1.07998 * 120.01266 * 180.25823 * 19 17 16 35 35 H 0.96699 * 117.00174 * 179.97438 * 23 21 20 36 36 H 1.08001 * 120.10545 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 6 2.4596 -6.1325 -0.0037 13 8 3.6520 -5.9109 -0.0040 14 7 2.0103 -7.4032 -0.0047 15 6 2.9149 -8.4654 0.1064 16 6 2.6591 -9.6665 -0.5443 17 6 3.5496 -10.7196 -0.4373 18 17 3.2216 -12.2165 -1.2530 19 6 4.7015 -10.5822 0.3126 20 6 4.9641 -9.3810 0.9740 21 6 6.1926 -9.2324 1.7811 22 8 6.4216 -8.1848 2.3516 23 8 7.0589 -10.2589 1.8842 24 6 4.0651 -8.3191 0.8654 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5562 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 0.8533 -5.0443 -0.8931 31 1 0.8539 -5.0453 0.8869 32 1 1.0600 -7.5816 -0.0823 33 1 1.7617 -9.7783 -1.1347 34 1 5.3967 -11.4050 0.3906 35 1 7.8488 -10.1143 2.4229 36 1 4.2649 -7.3865 1.3721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:04 Heat of formation + Delta-G solvation = -122.839313 kcal Electronic energy + Delta-G solvation = -21929.548111 eV Core-core repulsion = 18210.970170 eV Total energy + Delta-G solvation = -3718.577941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07392 -40.19886 -38.71811 -36.91955 -36.38005 -35.01155 -34.28971 -32.16000 -31.58536 -30.25564 -27.82508 -25.36093 -24.39286 -22.90030 -21.70904 -20.80126 -19.92183 -18.65964 -18.12713 -17.17010 -16.66454 -16.24246 -16.16758 -15.98093 -15.77899 -15.23863 -14.84856 -14.45458 -13.96584 -13.83702 -13.73150 -13.37981 -12.59504 -12.39646 -12.28690 -12.06916 -11.90142 -11.82243 -11.54401 -11.45439 -10.95727 -10.83873 -10.70121 -10.65414 -10.56116 -9.92442 -9.73834 -9.37646 -9.33704 -9.07809 -8.56451 -8.34628 -6.00393 -4.01887 0.17197 0.70145 1.58749 2.06250 2.53791 2.64209 2.89894 3.28703 3.33746 3.39710 3.44707 4.36591 4.47080 4.55388 4.62180 4.73101 4.74780 5.00017 5.14331 5.35994 5.53033 5.56169 5.57701 5.72645 5.76291 5.89996 6.11571 6.13242 6.43087 6.63309 6.83567 7.08728 7.16139 7.55391 7.66434 7.78067 7.99560 8.06342 8.43208 9.05103 9.62442 11.11084 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.002510 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.588032 B =11150.482244 C =12382.071265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.512 3.488 13 O -0.509 6.509 14 N -0.681 5.681 15 C 0.163 3.837 16 C -0.108 4.108 17 C -0.029 4.029 18 Cl -0.058 7.058 19 C -0.076 4.076 20 C -0.095 4.095 21 C 0.528 3.472 22 O -0.497 6.497 23 O -0.512 6.512 24 C -0.056 4.056 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.416 0.584 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.417 0.583 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -27.598 0.487 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.176 4.176 12 C 0.302 3.698 13 O -0.381 6.381 14 N -0.328 5.328 15 C 0.067 3.933 16 C -0.130 4.130 17 C -0.056 4.056 18 Cl -0.029 7.029 19 C -0.096 4.096 20 C -0.097 4.097 21 C 0.371 3.629 22 O -0.385 6.385 23 O -0.324 6.324 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.253 0.747 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.276 0.724 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.699 -27.110 0.349 27.705 hybrid contribution 0.359 0.752 0.156 0.847 sum 6.057 -26.358 0.506 27.050 Atomic orbital electron populations 1.69959 1.06043 1.26598 1.51125 1.25016 0.94861 0.99282 0.95318 0.86589 0.79924 0.83370 0.78127 1.20658 1.21239 1.19806 1.21260 0.93214 0.90967 1.50289 0.92541 1.19127 0.93907 0.91381 0.97206 1.21495 0.98771 0.91294 1.01966 1.21903 0.97920 0.93385 1.04369 1.21678 0.90916 0.83183 0.74052 1.90740 1.17179 1.84123 1.46094 1.43876 1.10089 1.04725 1.74113 1.17383 0.92138 0.88080 0.95694 1.21026 1.00840 0.91719 0.99383 1.20423 0.96561 0.88777 0.99831 1.98391 1.95223 1.31514 1.77767 1.21252 0.95880 0.97473 0.94959 1.18709 0.94220 0.95062 1.01692 1.20629 0.82898 0.80837 0.78503 1.90965 1.75105 1.28453 1.43995 1.84526 1.35580 1.43079 1.69256 1.21443 0.92004 0.99157 0.95056 0.93033 0.96545 0.96507 0.92456 0.92501 0.88755 0.88629 0.74733 0.83708 0.83267 0.72411 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.00 4.44 -26.74 -0.12 -2.11 16 11 C -0.14 -2.01 5.70 -27.89 -0.16 -2.17 16 12 C 0.51 7.39 7.56 -10.98 -0.08 7.30 16 13 O -0.51 -9.40 13.67 5.56 0.08 -9.32 16 14 N -0.68 -7.04 5.34 -9.90 -0.05 -7.10 16 15 C 0.16 1.76 6.27 -83.75 -0.53 1.24 16 16 C -0.11 -0.92 9.73 -39.28 -0.38 -1.31 16 17 C -0.03 -0.25 6.31 -39.58 -0.25 -0.50 16 18 Cl -0.06 -0.44 28.95 -51.86 -1.50 -1.94 16 19 C -0.08 -0.68 9.39 -39.10 -0.37 -1.05 16 20 C -0.09 -1.05 5.87 -105.01 -0.62 -1.67 16 21 C 0.53 5.96 8.27 34.62 0.29 6.25 16 22 O -0.50 -7.43 17.13 -19.24 -0.33 -7.76 16 23 O -0.51 -3.79 12.68 -40.53 -0.51 -4.30 16 24 C -0.06 -0.71 8.20 -38.96 -0.32 -1.03 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.42 2.74 8.82 -40.82 -0.36 2.38 16 33 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.08 7.60 -52.49 -0.40 0.68 16 35 H 0.42 1.26 9.11 45.56 0.42 1.67 16 36 H 0.16 2.46 6.00 -52.49 -0.32 2.14 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -35.38 337.62 -7.76 -43.14 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.16 Total: -0.35 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.08 Total: -8.28 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.68 Total: -33.16 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.77 Total: -21.38 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.38 -7.76 -43.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.701 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds