Wall clock time and date at job start Tue Mar 31 2020 09:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48499 * 109.47585 * 270.00105 * 3 2 1 5 5 H 1.48497 * 109.47218 * 30.00595 * 3 2 1 6 6 H 1.48507 * 109.46825 * 150.00128 * 3 2 1 7 7 C 1.37872 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00582 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46885 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00554 * 359.97438 * 12 11 10 14 14 N 1.34789 * 119.99712 * 179.97438 * 12 11 10 15 15 C 1.39291 * 119.99852 * 185.31403 * 14 12 11 16 16 C 1.38848 * 120.15669 * 34.93380 * 15 14 12 17 17 C 1.38013 * 120.08941 * 179.97438 * 16 15 14 18 18 C 1.38681 * 120.40445 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 119.84161 * 180.02562 * 18 17 16 20 20 C 1.37881 * 120.31115 * 359.74350 * 18 17 16 21 21 C 1.39747 * 119.90245 * 0.51326 * 20 18 17 22 22 C 1.47386 * 120.20112 * 179.76786 * 21 20 18 23 23 O 1.21513 * 120.00279 * 174.63413 * 22 21 20 24 24 O 1.34762 * 119.99890 * 354.90921 * 22 21 20 25 25 H 0.97004 * 120.00033 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47592 * 59.99733 * 9 7 2 27 27 H 1.09004 * 109.47101 * 299.99787 * 9 7 2 28 28 H 1.08999 * 109.47177 * 59.99467 * 10 9 7 29 29 H 1.08999 * 109.46847 * 299.99361 * 10 9 7 30 30 H 1.08999 * 109.47644 * 59.99637 * 11 10 9 31 31 H 1.09004 * 109.46964 * 299.99743 * 11 10 9 32 32 H 0.96998 * 119.99986 * 5.31944 * 14 12 11 33 33 H 1.07993 * 119.95560 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.79942 * 180.02562 * 17 16 15 35 35 H 1.08002 * 120.04917 * 180.25005 * 20 18 17 36 36 H 0.96692 * 116.99701 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0033 12 6 2.4597 -6.1324 -0.0037 13 8 3.6521 -5.9108 -0.0031 14 7 2.0104 -7.4032 -0.0047 15 6 2.9107 -8.4602 0.1067 16 6 4.0473 -8.3285 0.8932 17 6 4.9381 -9.3770 1.0030 18 6 4.7071 -10.5675 0.3304 19 17 5.8370 -11.8771 0.4794 20 6 3.5814 -10.7181 -0.4514 21 6 2.6736 -9.6630 -0.5760 22 6 1.4707 -9.8149 -1.4141 23 8 0.6351 -8.9332 -1.4432 24 8 1.2950 -10.9341 -2.1438 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8714 -3.6046 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8546 -5.0442 -0.8939 31 1 0.8528 -5.0454 0.8860 32 1 1.0602 -7.5816 -0.0831 33 1 4.2341 -7.4048 1.4205 34 1 5.8204 -9.2696 1.6164 35 1 3.4036 -11.6485 -0.9701 36 1 0.4905 -10.9883 -2.6775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:49 Heat of formation + Delta-G solvation = -120.309627 kcal Electronic energy + Delta-G solvation = -22241.277335 eV Core-core repulsion = 18522.809089 eV Total energy + Delta-G solvation = -3718.468246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33915 -39.97808 -38.74359 -36.90920 -36.50213 -34.76472 -34.25589 -32.13430 -31.95525 -30.05865 -27.80390 -25.20379 -24.29797 -23.11960 -21.72918 -20.72050 -19.87167 -18.61247 -18.07398 -17.57013 -17.03305 -16.25780 -16.15861 -15.74745 -15.66089 -15.10353 -14.63112 -14.44363 -13.93729 -13.81030 -13.66313 -13.33954 -12.91288 -12.41921 -12.30617 -12.11235 -11.93637 -11.83128 -11.45287 -11.39285 -11.00572 -10.82919 -10.67004 -10.55713 -10.38231 -9.93062 -9.71585 -9.57395 -9.34162 -9.06314 -8.44555 -8.33540 -5.99067 -4.00810 0.14900 0.72223 1.72640 2.07090 2.56009 2.58192 2.90618 3.28477 3.33982 3.39918 3.44328 4.26411 4.42144 4.47741 4.64282 4.71836 4.95409 5.05639 5.31408 5.37054 5.46149 5.60155 5.61923 5.70285 5.77231 5.93543 6.06728 6.18530 6.44818 6.65542 6.85677 7.10380 7.27859 7.44607 7.68258 7.80437 8.00905 8.09571 8.44285 9.06180 9.63313 11.12385 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.002545 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.525396 B =11000.054532 C =12078.800033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.514 3.486 13 O -0.513 6.513 14 N -0.673 5.673 15 C 0.237 3.763 16 C -0.126 4.126 17 C -0.047 4.047 18 C -0.075 4.075 19 Cl -0.065 7.065 20 C -0.030 4.030 21 C -0.163 4.163 22 C 0.537 3.463 23 O -0.513 6.513 24 O -0.509 6.509 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.426 0.574 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -27.443 0.048 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.305 3.695 13 O -0.387 6.387 14 N -0.323 5.323 15 C 0.137 3.863 16 C -0.147 4.147 17 C -0.067 4.067 18 C -0.103 4.103 19 Cl -0.036 7.036 20 C -0.049 4.049 21 C -0.168 4.168 22 C 0.382 3.618 23 O -0.402 6.402 24 O -0.321 6.321 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.269 0.731 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.651 -26.908 0.290 27.496 hybrid contribution -0.517 0.618 -0.477 0.936 sum 5.133 -26.290 -0.187 26.787 Atomic orbital electron populations 1.69964 1.06040 1.26584 1.51078 1.25021 0.94859 0.99274 0.95354 0.86588 0.79883 0.83401 0.78115 1.20672 1.21251 1.19829 1.21252 0.93174 0.90967 1.50313 0.92556 1.19133 0.93939 0.91352 0.97270 1.21486 0.98731 0.91300 1.01829 1.21908 0.97981 0.93257 1.04534 1.21693 0.90805 0.83294 0.73739 1.90698 1.17159 1.84410 1.46400 1.44306 1.11634 1.04611 1.71760 1.17843 0.91096 0.86419 0.90904 1.21194 0.93885 1.00376 0.99235 1.21239 0.98954 0.90251 0.96218 1.20695 0.94205 0.91226 1.04166 1.98379 1.60441 1.47616 1.97152 1.21097 0.90497 0.98454 0.94897 1.18673 0.97247 0.96544 1.04316 1.20502 0.85111 0.79003 0.77146 1.90776 1.44415 1.41348 1.63705 1.84541 1.48832 1.41103 1.57600 0.93033 0.96506 0.96494 0.92509 0.92549 0.88661 0.88626 0.73089 0.82633 0.83739 0.83153 0.72299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.11 16 11 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 12 C 0.51 8.01 7.55 -10.98 -0.08 7.93 16 13 O -0.51 -9.36 13.77 5.56 0.08 -9.29 16 14 N -0.67 -8.67 4.69 -9.67 -0.05 -8.72 16 15 C 0.24 2.84 6.26 -83.46 -0.52 2.32 16 16 C -0.13 -1.43 8.63 -39.44 -0.34 -1.77 16 17 C -0.05 -0.43 9.81 -39.50 -0.39 -0.82 16 18 C -0.08 -0.67 6.31 -39.55 -0.25 -0.92 16 19 Cl -0.06 -0.52 28.94 -51.86 -1.50 -2.02 16 20 C -0.03 -0.26 9.38 -39.15 -0.37 -0.63 16 21 C -0.16 -1.69 5.89 -104.83 -0.62 -2.31 16 22 C 0.54 5.31 8.25 34.45 0.28 5.59 16 23 O -0.51 -6.16 14.67 -19.28 -0.28 -6.44 16 24 O -0.51 -3.36 12.69 -40.66 -0.52 -3.87 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.43 5.03 6.31 -40.82 -0.26 4.77 16 33 H 0.16 1.92 6.53 -52.49 -0.34 1.58 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.05 7.62 -52.49 -0.40 0.65 16 36 H 0.42 0.95 9.11 45.56 0.42 1.37 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -33.66 333.13 -7.72 -41.38 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.08 Total: 1.68 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.11 Total: -8.39 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.69 Total: -34.96 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.72 Total: -19.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.66 -7.72 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.928 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds