Wall clock time and date at job start Tue Mar 31 2020 09:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48510 * 109.46982 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47140 * 119.99744 * 3 2 1 6 6 H 1.48495 * 109.47123 * 240.00125 * 3 2 1 7 7 C 1.37878 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99911 * 10.75815 * 7 2 1 9 9 C 1.50693 * 119.99784 * 190.76252 * 7 2 1 10 10 O 1.42903 * 112.94138 * 65.46229 * 9 7 2 11 11 C 1.53933 * 113.73615 * 293.89142 * 9 7 2 12 12 N 1.48184 * 86.10275 * 221.96008 * 11 9 7 13 13 C 1.46907 * 111.07118 * 137.52111 * 12 11 9 14 14 C 1.50700 * 109.47114 * 75.88129 * 13 12 11 15 15 C 1.37904 * 119.92844 * 255.89644 * 14 13 12 16 16 C 1.39650 * 119.85508 * 179.97438 * 15 14 13 17 17 C 1.47666 * 120.13114 * 179.97438 * 16 15 14 18 18 O 1.21480 * 120.00133 * 359.97438 * 17 16 15 19 19 O 1.34725 * 119.99819 * 180.02562 * 17 16 15 20 20 C 1.39688 * 119.73268 * 0.02562 * 16 15 14 21 21 C 1.37855 * 119.86011 * 359.97438 * 20 16 15 22 22 C 1.38497 * 119.92972 * 75.62295 * 14 13 12 23 23 Cl 1.73599 * 119.86594 * 0.02562 * 22 14 13 24 24 C 1.47954 * 90.80066 * 24.60087 * 12 11 9 25 25 H 0.97005 * 119.99766 * 174.91225 * 1 2 3 26 26 H 0.96699 * 113.99423 * 306.09410 * 10 9 7 27 27 H 1.09010 * 113.75774 * 336.24212 * 11 9 7 28 28 H 1.08994 * 113.76194 * 107.60246 * 11 9 7 29 29 H 1.09000 * 109.47021 * 195.88160 * 13 12 11 30 30 H 1.08994 * 109.46743 * 315.88163 * 13 12 11 31 31 H 1.07993 * 120.07350 * 359.97438 * 15 14 13 32 32 H 0.96700 * 117.00060 * 180.02562 * 19 17 16 33 33 H 1.08004 * 120.06916 * 179.97438 * 20 16 15 34 34 H 1.07998 * 119.93183 * 180.02562 * 21 20 16 35 35 H 1.08998 * 113.75973 * 221.08797 * 24 12 11 36 36 H 1.08997 * 113.86531 * 89.73168 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4788 -2.1212 -0.1736 9 6 3.4916 -1.2053 0.2442 10 8 3.8435 -0.7766 1.5613 11 6 4.3071 -0.5220 -0.8683 12 7 5.2544 -1.6530 -0.7292 13 6 5.6998 -2.1337 -2.0440 14 6 6.7091 -1.1713 -2.6152 15 6 6.3394 -0.3031 -3.6209 16 6 7.2758 0.5883 -4.1487 17 6 6.8867 1.5203 -5.2261 18 8 5.7503 1.5121 -5.6553 19 8 7.7924 2.3788 -5.7337 20 6 8.5822 0.5942 -3.6542 21 6 8.9394 -0.2786 -2.6487 22 6 8.0044 -1.1569 -2.1252 23 17 8.4602 -2.2485 -0.8547 24 6 4.1801 -2.5132 -0.1862 25 1 -0.4850 -0.8368 -0.0745 26 1 3.4799 0.0858 1.8044 27 1 3.7972 -0.4921 -1.8313 28 1 4.7257 0.4414 -0.5774 29 1 6.1566 -3.1174 -1.9356 30 1 4.8434 -2.2026 -2.7147 31 1 5.3280 -0.3126 -3.9994 32 1 7.4909 2.9697 -6.4373 33 1 9.3109 1.2811 -4.0588 34 1 9.9490 -0.2748 -2.2653 35 1 4.4975 -3.1378 0.6488 36 1 3.6320 -3.0679 -0.9477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:22 Heat of formation + Delta-G solvation = -76.345495 kcal Electronic energy + Delta-G solvation = -23495.713646 eV Core-core repulsion = 19779.151829 eV Total energy + Delta-G solvation = -3716.561818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68002 -39.66306 -38.67105 -36.47450 -36.26150 -34.80537 -32.52944 -32.33813 -31.28974 -28.37537 -25.65415 -25.47165 -24.89694 -22.76373 -21.84621 -20.69167 -19.06092 -18.19352 -17.84824 -17.48862 -16.53188 -15.91484 -15.85516 -15.64198 -15.02992 -14.87923 -14.70599 -13.89363 -13.68430 -13.48638 -13.31059 -12.98234 -12.81850 -12.36051 -12.02040 -11.89365 -11.84778 -11.55418 -11.48380 -11.11214 -11.00540 -10.87235 -10.66141 -10.48989 -10.27110 -9.73580 -9.34212 -9.14954 -8.91638 -8.84044 -8.41943 -8.03876 -6.61172 -4.35971 0.35413 1.03654 2.06075 2.27436 2.74919 3.17195 3.29938 3.42357 3.44793 4.27760 4.39907 4.53088 4.60624 4.82273 4.91290 4.99116 5.08842 5.27536 5.40671 5.53737 5.62932 5.76754 5.79998 5.83117 5.85717 5.98129 6.11207 6.20558 6.24549 6.39488 6.42288 6.53772 6.87566 6.97698 7.64368 7.65507 7.71903 8.16888 8.66746 8.89108 9.39370 10.73803 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.005484 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.407557 B = 5104.725358 C = 6698.971699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.034 3.966 3 Si 1.044 2.956 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.615 4.615 8 H 0.065 0.935 9 C 0.205 3.795 10 O -0.565 6.565 11 C -0.035 4.035 12 N -0.463 5.463 13 C 0.052 3.948 14 C -0.072 4.072 15 C -0.035 4.035 16 C -0.130 4.130 17 C 0.528 3.472 18 O -0.507 6.507 19 O -0.513 6.513 20 C -0.054 4.054 21 C -0.130 4.130 22 C 0.021 3.979 23 Cl -0.044 7.044 24 C 0.027 3.973 25 H 0.271 0.729 26 H 0.363 0.637 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.943 1.023 -9.269 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.173 4.173 3 Si 0.872 3.128 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.653 4.653 8 H 0.083 0.917 9 C 0.164 3.836 10 O -0.373 6.373 11 C -0.164 4.164 12 N -0.185 5.185 13 C -0.077 4.077 14 C -0.073 4.073 15 C -0.054 4.054 16 C -0.131 4.131 17 C 0.372 3.628 18 O -0.396 6.396 19 O -0.326 6.326 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.007 4.007 23 Cl -0.014 7.014 24 C -0.101 4.101 25 H 0.082 0.918 26 H 0.212 0.788 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.273 0.727 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.517 1.786 -8.540 21.379 hybrid contribution -0.978 -0.939 -1.113 1.754 sum 18.540 0.848 -9.653 20.919 Atomic orbital electron populations 1.70818 1.06803 1.31141 1.44020 1.25803 0.96360 1.02460 0.92633 0.84112 0.75180 0.76077 0.77416 1.20768 1.20663 1.19892 1.22341 0.91979 0.96017 1.54983 0.91723 1.20292 0.92961 0.90323 0.79990 1.86369 1.77428 1.40289 1.33224 1.25112 0.93964 0.95470 1.01850 1.68708 1.27289 1.05680 1.16824 1.21671 0.96043 0.96639 0.93303 1.19675 0.93438 0.98372 0.95845 1.21214 0.99575 0.91322 0.93294 1.19021 0.95656 0.99458 0.99012 1.20806 0.82419 0.78634 0.80946 1.90934 1.20881 1.68428 1.59325 1.84537 1.44817 1.48915 1.54281 1.21337 0.94916 0.96752 0.94268 1.21036 0.99875 0.96075 0.97909 1.21146 0.93991 0.93951 0.91582 1.98397 1.92057 1.61704 1.49265 1.23897 0.90748 0.96687 0.98759 0.91838 0.78797 0.90906 0.91225 0.89466 0.92695 0.83657 0.72669 0.83713 0.84078 0.90160 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.70 55.43 0.76 -25.79 16 2 C 0.03 0.95 5.46 -17.82 -0.10 0.86 16 3 Si 1.04 24.19 24.70 -169.99 -4.20 19.99 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -5.91 5.66 56.52 0.32 -5.59 16 6 H -0.27 -5.99 6.34 56.52 0.36 -5.63 16 7 C -0.62 -16.75 9.05 -34.44 -0.31 -17.06 16 8 H 0.06 1.89 8.05 -52.49 -0.42 1.47 16 9 C 0.21 4.87 1.06 -90.84 -0.10 4.78 16 10 O -0.56 -13.77 13.46 -35.23 -0.47 -14.24 16 11 C -0.03 -0.74 4.50 -2.64 -0.01 -0.76 16 12 N -0.46 -8.79 6.14 -239.50 -1.47 -10.26 16 13 C 0.05 0.81 4.21 -4.97 -0.02 0.79 16 14 C -0.07 -1.04 5.09 -104.65 -0.53 -1.57 16 15 C -0.04 -0.49 9.21 -39.18 -0.36 -0.86 16 16 C -0.13 -1.62 5.87 -104.98 -0.62 -2.24 16 17 C 0.53 6.47 8.27 34.58 0.29 6.76 16 18 O -0.51 -7.89 17.13 -19.25 -0.33 -8.22 16 19 O -0.51 -4.31 12.68 -40.56 -0.51 -4.83 16 20 C -0.05 -0.55 9.61 -39.18 -0.38 -0.93 16 21 C -0.13 -1.38 9.81 -39.61 -0.39 -1.77 16 22 C 0.02 0.27 6.32 -39.37 -0.25 0.02 16 23 Cl -0.04 -0.57 27.53 -51.86 -1.43 -2.00 16 24 C 0.03 0.56 7.37 -2.76 -0.02 0.54 16 25 H 0.27 8.02 8.72 -40.82 -0.36 7.66 16 26 H 0.36 8.38 5.71 45.56 0.26 8.64 16 27 H 0.07 1.57 7.65 -51.92 -0.40 1.17 16 28 H 0.07 1.49 6.79 -51.93 -0.35 1.14 16 29 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 30 H 0.05 0.85 7.50 -51.93 -0.39 0.47 16 31 H 0.15 2.14 7.59 -52.49 -0.40 1.74 16 32 H 0.41 1.66 9.11 45.56 0.42 2.08 16 33 H 0.15 1.11 7.61 -52.48 -0.40 0.71 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.07 1.41 7.83 -51.93 -0.41 1.00 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -32.33 320.61 -8.23 -40.56 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -2.61 Total: 11.38 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.80 Total: -11.43 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.71 Total: -36.05 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.32 Total: -27.29 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.20 Total: 19.99 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.43 Total: -2.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.33 -8.23 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.788 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds