Wall clock time and date at job start Tue Mar 31 2020 09:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47601 * 119.99776 * 3 2 1 6 6 H 1.48506 * 109.47155 * 240.00051 * 3 2 1 7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00299 * 193.82037 * 7 2 1 9 9 C 1.50699 * 119.99686 * 13.82310 * 7 2 1 10 10 O 1.42901 * 112.94096 * 53.33976 * 9 7 2 11 11 C 1.53940 * 113.73240 * 281.63224 * 9 7 2 12 12 N 1.47957 * 86.18105 * 221.92205 * 11 9 7 13 13 C 1.46901 * 111.00157 * 137.58142 * 12 11 9 14 14 H 1.08997 * 109.47076 * 315.64568 * 13 12 11 15 15 C 1.50701 * 109.47431 * 195.63978 * 13 12 11 16 16 O 1.20815 * 119.99873 * 0.02562 * 15 13 12 17 17 O 1.34230 * 119.99647 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.46723 * 75.63987 * 13 12 11 19 19 C 1.38260 * 119.99451 * 39.72864 * 18 13 12 20 20 C 1.38221 * 120.02895 * 179.76115 * 19 18 13 21 21 C 1.38246 * 120.00965 * 0.51224 * 20 19 18 22 22 C 1.38328 * 119.98470 * 359.74305 * 21 20 19 23 23 Cl 1.73599 * 120.01121 * 180.02562 * 22 21 20 24 24 C 1.38193 * 119.99218 * 219.99878 * 18 13 12 25 25 C 1.47962 * 90.76408 * 24.69162 * 12 11 9 26 26 H 0.97001 * 119.99982 * 185.88094 * 1 2 3 27 27 H 0.96693 * 113.99776 * 303.03764 * 10 9 7 28 28 H 1.08994 * 113.76253 * 336.24193 * 11 9 7 29 29 H 1.09001 * 113.75976 * 107.61000 * 11 9 7 30 30 H 0.96701 * 116.99435 * 179.97438 * 17 15 13 31 31 H 1.08002 * 119.98412 * 359.97438 * 19 18 13 32 32 H 1.07993 * 119.99970 * 180.25449 * 20 19 18 33 33 H 1.07998 * 120.00218 * 179.76242 * 21 20 19 34 34 H 1.08000 * 120.01112 * 359.96255 * 24 18 13 35 35 H 1.08999 * 113.76019 * 220.99396 * 25 12 11 36 36 H 1.09000 * 113.85879 * 89.64168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0611 -1.2076 0.2240 9 6 1.2838 -2.4804 -0.3107 10 8 0.5652 -2.4316 -1.5449 11 6 0.4593 -3.0293 0.8677 12 7 0.9801 -4.3599 0.4835 13 6 1.3699 -5.1350 1.6689 14 1 1.9279 -4.4962 2.3534 15 6 2.2337 -6.2961 1.2482 16 8 2.4979 -6.4606 0.0809 17 8 2.7103 -7.1468 2.1707 18 6 0.1342 -5.6524 2.3593 19 6 -0.9299 -6.1218 1.6117 20 6 -2.0616 -6.6010 2.2442 21 6 -2.1343 -6.6015 3.6247 22 6 -1.0720 -6.1271 4.3731 23 17 -1.1623 -6.1280 6.1067 24 6 0.0628 -5.6524 3.7393 25 6 2.1608 -3.7357 -0.1536 26 1 -0.4850 -0.8356 0.0861 27 1 -0.0834 -1.7161 -1.5944 28 1 0.8054 -2.6871 1.8429 29 1 -0.6177 -2.9248 0.7366 30 1 3.2594 -7.8765 1.8527 31 1 -0.8755 -6.1171 0.5330 32 1 -2.8909 -6.9713 1.6599 33 1 -3.0201 -6.9724 4.1188 34 1 0.8925 -5.2823 4.3232 35 1 2.4432 -4.1954 -1.1006 36 1 3.0056 -3.5995 0.5216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:27 Heat of formation + Delta-G solvation = -77.871126 kcal Electronic energy + Delta-G solvation = -23810.727020 eV Core-core repulsion = 20094.099046 eV Total energy + Delta-G solvation = -3716.627974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82940 -39.23092 -38.82719 -36.56572 -36.04408 -34.86177 -32.38247 -32.27690 -30.79527 -28.55853 -26.23269 -25.22044 -23.57981 -22.69153 -22.55275 -20.44871 -18.99416 -18.11859 -17.88361 -17.19837 -16.58850 -15.97455 -15.66177 -15.13861 -15.09203 -14.40337 -14.18635 -13.95977 -13.80009 -13.62192 -13.52455 -13.00301 -12.57667 -12.11808 -11.88059 -11.70448 -11.59385 -11.51645 -11.43639 -11.16602 -11.06024 -10.91987 -10.79111 -10.55321 -10.23790 -10.17595 -9.24707 -9.00036 -8.76593 -8.71385 -8.58303 -7.93954 -6.61063 -4.39922 1.06513 1.16358 2.00993 2.29028 2.94958 3.32460 3.37041 3.54706 3.57067 4.31016 4.39952 4.52819 4.75873 4.91995 4.97271 5.18004 5.22837 5.29343 5.31959 5.54303 5.62338 5.66790 5.79643 5.89646 6.03611 6.10947 6.29637 6.43552 6.46851 6.52320 6.64944 6.71199 6.81599 6.95522 7.50797 7.77534 7.97337 8.15065 8.52947 8.99125 9.30651 10.70468 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.004434 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.957288 B = 6313.877568 C = 7176.232013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.037 3.963 3 Si 1.064 2.936 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.621 4.621 8 H 0.060 0.940 9 C 0.224 3.776 10 O -0.562 6.562 11 C -0.016 4.016 12 N -0.455 5.455 13 C 0.098 3.902 14 H 0.091 0.909 15 C 0.486 3.514 16 O -0.488 6.488 17 O -0.517 6.517 18 C -0.062 4.062 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.038 4.038 23 Cl -0.075 7.075 24 C -0.090 4.090 25 C 0.029 3.971 26 H 0.270 0.730 27 H 0.371 0.629 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.407 0.593 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -13.055 8.898 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.169 4.169 3 Si 0.891 3.109 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.658 4.658 8 H 0.078 0.922 9 C 0.183 3.817 10 O -0.369 6.369 11 C -0.145 4.145 12 N -0.180 5.180 13 C -0.012 4.012 14 H 0.108 0.892 15 C 0.326 3.674 16 O -0.373 6.373 17 O -0.329 6.329 18 C -0.063 4.063 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.064 4.064 23 Cl -0.047 7.047 24 C -0.110 4.110 25 C -0.099 4.099 26 H 0.082 0.918 27 H 0.220 0.780 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.265 0.735 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.884 -12.141 8.288 14.820 hybrid contribution 0.789 -1.245 0.888 1.721 sum -1.095 -13.386 9.176 16.266 Atomic orbital electron populations 1.70907 1.06955 1.30902 1.44721 1.25915 0.96253 1.02838 0.91867 0.83633 0.75201 0.75242 0.76846 1.20552 1.21279 1.21067 1.22318 0.97513 0.92605 1.53402 0.92219 1.20016 0.88021 0.92655 0.81016 1.86257 1.56879 1.55998 1.37745 1.24985 1.01134 0.86843 1.01518 1.68729 1.20167 1.13606 1.15457 1.20792 0.91981 0.92452 0.95979 0.89191 1.23144 0.77919 0.82639 0.83721 1.90734 1.55260 1.71949 1.19386 1.84545 1.64807 1.40402 1.43110 1.19239 0.95036 0.99837 0.92212 1.21286 0.92021 0.94834 1.01480 1.21139 0.98419 0.99900 0.93589 1.21070 0.97696 0.99849 0.94003 1.20758 0.96722 1.04634 0.84327 1.98361 1.98413 1.97362 1.10522 1.20894 0.97105 0.99191 0.93773 1.23979 0.92258 0.94210 0.99442 0.91801 0.78010 0.91259 0.90584 0.73474 0.84160 0.84898 0.85050 0.84839 0.89486 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 12.80 55.43 0.71 -23.68 16 2 C 0.04 0.98 5.26 -17.82 -0.09 0.88 16 3 Si 1.06 23.45 29.93 -169.99 -5.09 18.36 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.62 -16.29 8.56 -34.44 -0.29 -16.59 16 8 H 0.06 1.57 7.85 -52.49 -0.41 1.15 16 9 C 0.22 5.42 1.08 -90.83 -0.10 5.33 16 10 O -0.56 -14.31 13.45 -35.23 -0.47 -14.78 16 11 C -0.02 -0.35 6.05 -2.77 -0.02 -0.36 16 12 N -0.46 -8.92 4.96 -233.03 -1.15 -10.07 16 13 C 0.10 1.60 1.79 -70.01 -0.13 1.48 16 14 H 0.09 1.43 7.54 -51.93 -0.39 1.04 16 15 C 0.49 7.62 7.37 36.01 0.27 7.89 16 16 O -0.49 -9.08 15.89 -18.74 -0.30 -9.37 16 17 O -0.52 -6.18 13.34 -39.26 -0.52 -6.71 16 18 C -0.06 -0.92 4.49 -104.63 -0.47 -1.39 16 19 C -0.08 -1.11 9.32 -39.58 -0.37 -1.48 16 20 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 22 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 23 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 24 C -0.09 -1.21 9.45 -39.55 -0.37 -1.59 16 25 C 0.03 0.63 5.82 -2.76 -0.02 0.62 16 26 H 0.27 7.17 5.52 -40.82 -0.23 6.95 16 27 H 0.37 9.29 6.95 45.56 0.32 9.60 16 28 H 0.07 1.49 7.65 -51.93 -0.40 1.09 16 29 H 0.08 1.66 7.79 -51.93 -0.40 1.25 16 30 H 0.41 3.00 9.10 45.56 0.41 3.42 16 31 H 0.14 2.15 7.71 -52.49 -0.40 1.75 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.64 8.04 -52.49 -0.42 1.22 16 35 H 0.09 1.98 7.93 -51.93 -0.41 1.57 16 36 H 0.07 1.36 7.83 -51.93 -0.41 0.95 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -30.15 326.07 -8.43 -38.58 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -2.38 Total: 14.39 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.63 Total: -9.27 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: -0.45 Total: -33.75 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.30 Total: -30.86 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.09 Total: 18.36 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.15 -8.43 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds