Wall clock time and date at job start Tue Mar 31 2020 09:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48504 * 109.46857 * 271.46004 * 3 2 1 5 5 H 1.48500 * 109.47098 * 31.45729 * 3 2 1 6 6 H 1.48499 * 109.47282 * 151.46216 * 3 2 1 7 7 C 1.38970 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00019 * 348.01701 * 7 2 1 9 9 N 1.36949 * 119.99958 * 168.29310 * 7 2 1 10 10 C 1.46499 * 119.99840 * 317.75573 * 9 7 2 11 11 C 1.50696 * 109.47329 * 266.74942 * 10 9 7 12 12 O 1.20823 * 120.00310 * 5.40473 * 11 10 9 13 13 O 1.34233 * 119.99817 * 185.40905 * 11 10 9 14 14 C 1.34776 * 120.00076 * 137.76519 * 9 7 2 15 15 O 1.21687 * 120.00093 * 354.66047 * 14 9 7 16 16 C 1.47069 * 120.00160 * 174.67138 * 14 9 7 17 17 C 1.35168 * 122.49031 * 174.76556 * 16 14 9 18 18 S 1.76184 * 108.24822 * 179.91115 * 17 16 14 19 19 C 1.76050 * 90.18292 * 0.28789 * 18 17 16 20 20 N 1.38429 * 125.18240 * 179.86484 * 19 18 17 21 21 C 1.46506 * 119.99349 * 359.96121 * 20 19 18 22 22 C 1.53003 * 117.49701 * 223.74325 * 21 20 19 23 23 C 1.53004 * 117.49391 * 155.08786 * 21 20 19 24 24 N 1.29455 * 109.64543 * 359.83558 * 19 18 17 25 25 H 0.97002 * 119.99971 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46862 * 26.75065 * 10 9 7 27 27 H 1.09005 * 109.46858 * 146.74454 * 10 9 7 28 28 H 0.96698 * 116.99807 * 179.97438 * 13 11 10 29 29 H 1.07997 * 125.87690 * 0.02562 * 17 16 14 30 30 H 0.96991 * 120.00749 * 179.97438 * 20 19 18 31 31 H 1.08998 * 115.55052 * 9.41912 * 21 20 19 32 32 H 1.09006 * 117.49882 * 0.02562 * 22 21 20 33 33 H 1.08998 * 117.49453 * 145.02092 * 22 21 20 34 34 H 1.09002 * 117.49717 * 214.97416 * 23 21 20 35 35 H 1.08995 * 117.50249 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4648 2.0642 -1.3997 5 1 1.4614 2.6436 0.7306 6 1 3.5608 1.4314 0.6689 7 6 2.0089 -1.2035 0.0005 8 1 1.4866 -2.1285 0.1951 9 7 3.3571 -1.2160 -0.2401 10 6 3.9198 -0.3753 -1.2997 11 6 4.0105 -1.1701 -2.5768 12 8 3.5539 -2.2876 -2.6266 13 8 4.5986 -0.6366 -3.6590 14 6 4.1661 -2.0018 0.4977 15 8 3.7144 -2.6258 1.4397 16 6 5.5948 -2.1050 0.1645 17 6 6.4708 -2.7942 0.9292 18 16 8.0644 -2.6735 0.1877 19 6 7.3949 -1.6810 -1.1030 20 7 8.1168 -1.1536 -2.1599 21 6 9.5558 -1.4085 -2.2633 22 6 10.4572 -0.2290 -2.6339 23 6 10.1875 -1.3370 -3.6551 24 7 6.1244 -1.5198 -0.9137 25 1 -0.4850 0.8401 -0.0004 26 1 3.2770 0.4912 -1.4558 27 1 4.9155 -0.0411 -1.0081 28 1 4.6333 -1.1847 -4.4549 29 1 6.2341 -3.3285 1.8374 30 1 7.6701 -0.6154 -2.8318 31 1 9.9537 -2.1468 -1.5673 32 1 9.9796 0.7366 -2.8003 33 1 11.4483 -0.1916 -2.1818 34 1 11.0014 -2.0281 -3.8744 35 1 9.5327 -1.1000 -4.4935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:55 Heat of formation + Delta-G solvation = -9.268950 kcal Electronic energy + Delta-G solvation = -24015.177607 eV Core-core repulsion = 20335.860904 eV Total energy + Delta-G solvation = -3679.316703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22095 -39.19458 -38.44296 -37.46445 -35.55673 -34.75643 -33.56233 -32.10328 -29.04060 -27.91923 -26.19446 -23.82411 -22.81798 -22.43712 -21.73342 -21.24026 -18.90518 -18.12787 -17.52293 -17.23374 -17.03235 -16.12268 -16.02767 -15.60330 -15.25319 -14.86395 -14.79747 -14.66917 -13.81935 -13.55175 -13.25516 -12.99026 -12.70452 -12.44941 -12.39498 -12.15279 -12.03915 -11.92113 -11.45868 -11.01597 -10.95279 -10.91200 -10.54665 -10.05147 -9.97105 -9.82914 -9.39585 -9.20895 -9.03858 -8.78335 -7.91224 -7.64816 -6.42479 -4.08426 0.97667 1.13495 1.78420 2.51484 2.66910 2.96222 3.03998 3.18829 3.22193 3.44042 3.56356 4.06685 4.20302 4.30812 4.39443 4.47360 4.50157 4.75876 5.05106 5.21927 5.24505 5.47912 5.60204 5.65619 5.71171 5.74667 5.97336 6.04294 6.23286 6.51327 7.08181 7.13874 7.46695 7.86667 8.21538 8.40573 8.61871 8.83731 9.18305 9.62250 10.68346 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.005317 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.463723 B = 5265.099338 C = 5949.434173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.059 3.941 3 Si 0.874 3.126 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.304 4.304 8 H 0.110 0.890 9 N -0.430 5.430 10 C 0.102 3.898 11 C 0.483 3.517 12 O -0.503 6.503 13 O -0.528 6.528 14 C 0.541 3.459 15 O -0.543 6.543 16 C 0.077 3.923 17 C -0.220 4.220 18 S 0.048 5.952 19 C 0.346 3.654 20 N -0.665 5.665 21 C 0.086 3.914 22 C -0.191 4.191 23 C -0.184 4.184 24 N -0.531 5.531 25 H 0.277 0.723 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.394 0.606 29 H 0.186 0.814 30 H 0.416 0.584 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.136 1.623 -7.319 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.147 4.147 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.432 4.432 8 H 0.128 0.872 9 N -0.150 5.150 10 C -0.024 4.024 11 C 0.323 3.677 12 O -0.389 6.389 13 O -0.339 6.339 14 C 0.328 3.672 15 O -0.423 6.423 16 C -0.052 4.052 17 C -0.362 4.362 18 S 0.294 5.706 19 C -0.027 4.027 20 N -0.304 5.304 21 C -0.022 4.022 22 C -0.230 4.230 23 C -0.223 4.223 24 N -0.258 5.258 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.251 0.749 29 H 0.203 0.797 30 H 0.255 0.745 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.344 1.195 -6.550 23.315 hybrid contribution -0.665 0.818 -0.877 1.371 sum 21.679 2.013 -7.427 23.004 Atomic orbital electron populations 1.69655 1.05998 1.28094 1.45785 1.25462 0.95424 0.98372 0.95467 0.86992 0.81106 0.83487 0.78251 1.19669 1.20725 1.18253 1.19137 0.79571 0.96119 1.48334 0.87232 1.43174 1.07409 1.38928 1.25480 1.21835 1.02597 0.93585 0.84359 1.24121 0.72690 0.86311 0.84591 1.90670 1.44201 1.20424 1.83604 1.84546 1.74744 1.51451 1.23146 1.17070 0.82376 0.84414 0.83368 1.90708 1.74873 1.47339 1.29421 1.20461 0.97010 0.97391 0.90375 1.26542 0.92385 1.10030 1.07212 1.84567 1.12389 1.52539 1.21105 1.24228 0.90262 0.95569 0.92642 1.43118 1.05815 1.56437 1.25032 1.21566 0.79167 1.01370 1.00052 1.23535 1.01324 0.94839 1.03338 1.23441 1.03395 1.02385 0.93099 1.66980 1.07815 1.28435 1.22573 0.91270 0.88643 0.85347 0.74918 0.79656 0.74479 0.85337 0.88023 0.87720 0.87585 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 13.96 55.50 0.77 -24.40 16 2 C 0.06 1.68 5.42 -17.46 -0.09 1.58 16 3 Si 0.87 20.49 24.71 -169.99 -4.20 16.29 16 4 H -0.27 -5.84 6.68 56.52 0.38 -5.47 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.93 7.04 56.52 0.40 -5.53 16 7 C -0.30 -8.97 9.33 -14.99 -0.14 -9.11 16 8 H 0.11 3.62 8.03 -52.49 -0.42 3.20 16 9 N -0.43 -11.26 1.65 -117.44 -0.19 -11.46 16 10 C 0.10 2.28 4.11 -5.20 -0.02 2.25 16 11 C 0.48 10.16 6.79 36.00 0.24 10.41 16 12 O -0.50 -12.43 17.20 -18.75 -0.32 -12.76 16 13 O -0.53 -8.26 13.42 -39.27 -0.53 -8.79 16 14 C 0.54 13.85 7.56 -12.68 -0.10 13.75 16 15 O -0.54 -15.33 16.63 5.20 0.09 -15.25 16 16 C 0.08 1.60 6.42 -84.60 -0.54 1.06 16 17 C -0.22 -3.78 10.84 29.64 0.32 -3.46 16 18 S 0.05 0.62 21.92 -107.50 -2.36 -1.74 16 19 C 0.35 4.95 8.42 -88.05 -0.74 4.21 16 20 N -0.66 -7.06 5.72 -54.51 -0.31 -7.37 16 21 C 0.09 0.66 6.47 -67.92 -0.44 0.22 16 22 C -0.19 -1.13 10.46 -26.69 -0.28 -1.41 16 23 C -0.18 -1.05 10.46 -26.69 -0.28 -1.33 16 24 N -0.53 -9.61 5.57 -10.60 -0.06 -9.67 16 25 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.10 2.17 3.17 -51.93 -0.16 2.00 16 27 H 0.13 2.62 5.60 -51.93 -0.29 2.33 16 28 H 0.39 4.40 9.10 45.56 0.41 4.81 16 29 H 0.19 3.03 8.01 -52.49 -0.42 2.61 16 30 H 0.42 4.18 8.95 -40.82 -0.37 3.81 16 31 H 0.13 0.94 6.96 -51.93 -0.36 0.58 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -35.50 318.60 -6.84 -42.34 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -2.46 Total: 9.81 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: -2.07 Total: 18.17 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.21 Total: -52.89 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.76 Total: -36.79 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.20 Total: 16.29 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.36 Total: -1.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.50 -6.84 -42.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.071 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds