Wall clock time and date at job start Tue Mar 31 2020 09:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99912 * 2 1 4 4 H 1.08004 * 119.99515 * 212.73040 * 3 2 1 5 5 C 1.38815 * 120.00110 * 32.72850 * 3 2 1 6 6 N 1.31616 * 119.99817 * 6.09916 * 5 3 2 7 7 Si 1.86795 * 119.99888 * 186.09524 * 5 3 2 8 8 H 1.48509 * 109.47057 * 60.00181 * 7 5 3 9 9 H 1.48502 * 109.47406 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47413 * 300.00160 * 7 5 3 11 11 S 1.65593 * 119.99805 * 179.97438 * 2 1 3 12 12 O 1.42102 * 106.40590 * 203.54196 * 11 2 1 13 13 O 1.42104 * 106.40599 * 336.45893 * 11 2 1 14 14 C 1.76207 * 107.21864 * 89.99992 * 11 2 1 15 15 C 1.38401 * 119.82526 * 269.72376 * 14 11 2 16 16 C 1.37889 * 120.17235 * 179.71858 * 15 14 11 17 17 C 1.39857 * 119.81970 * 0.57806 * 16 15 14 18 18 C 1.47173 * 120.17047 * 179.68146 * 17 16 15 19 19 C 1.34917 * 119.99922 * 225.50519 * 18 17 16 20 20 C 1.46242 * 120.00034 * 11.50575 * 19 18 17 21 21 O 1.21625 * 119.99768 * 7.26437 * 20 19 18 22 22 O 1.34899 * 119.99981 * 187.26308 * 20 19 18 23 23 C 1.39855 * 119.65958 * 359.69677 * 17 16 15 24 24 C 1.37888 * 119.82295 * 0.02562 * 23 17 16 25 25 H 1.09001 * 109.47207 * 265.11330 * 1 2 3 26 26 H 1.09003 * 109.47198 * 25.11132 * 1 2 3 27 27 H 1.09005 * 109.47184 * 145.11315 * 1 2 3 28 28 H 0.97003 * 119.99613 * 180.02562 * 6 5 3 29 29 H 1.08000 * 119.91516 * 0.02562 * 15 14 11 30 30 H 1.07995 * 120.08913 * 180.27312 * 16 15 14 31 31 H 1.07993 * 120.00271 * 45.50416 * 18 17 16 32 32 H 1.08000 * 120.00286 * 191.50419 * 19 18 17 33 33 H 0.96705 * 114.00329 * 179.97438 * 22 20 19 34 34 H 1.08000 * 120.09170 * 179.97438 * 23 17 16 35 35 H 1.08008 * 119.91262 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1011 1.2601 -0.5058 5 6 1.6209 2.2926 0.6500 6 7 0.5233 2.1729 1.3664 7 14 2.4672 3.9518 0.5079 8 1 2.5152 4.3625 -0.9185 9 1 1.7098 4.9624 1.2892 10 1 3.8497 3.8496 1.0404 11 16 2.2929 -1.4341 0.0006 12 8 3.5759 -1.1566 0.5450 13 8 1.4113 -2.4063 0.5455 14 6 2.5537 -1.8866 -1.6823 15 6 1.6185 -2.6684 -2.3377 16 6 1.8125 -3.0219 -3.6563 17 6 2.9639 -2.5982 -4.3277 18 6 3.1822 -2.9769 -5.7330 19 6 4.3894 -3.4303 -6.1298 20 6 5.4007 -3.7846 -5.1346 21 8 5.1127 -3.7975 -3.9530 22 8 6.6529 -4.0970 -5.5271 23 6 3.9070 -1.8132 -3.6567 24 6 3.6957 -1.4633 -2.3398 25 1 -0.3634 -0.0875 1.0239 26 1 -0.3634 0.9306 -0.4361 27 1 -0.3634 -0.8430 -0.5878 28 1 0.1536 2.9464 1.8202 29 1 0.7320 -2.9985 -1.8165 30 1 1.0798 -3.6284 -4.1677 31 1 2.3762 -2.8919 -6.4467 32 1 4.6089 -3.5316 -7.1824 33 1 7.2501 -4.3168 -4.7990 34 1 4.7988 -1.4825 -4.1683 35 1 4.4232 -0.8574 -1.8200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610107925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:20 Heat of formation + Delta-G solvation = -96.932942 kcal Electronic energy + Delta-G solvation = -23501.273112 eV Core-core repulsion = 19785.862262 eV Total energy + Delta-G solvation = -3715.410850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.56956 -38.82618 -36.31361 -36.14666 -35.35284 -34.72652 -34.20522 -31.15203 -30.85542 -30.01261 -26.20043 -25.26250 -23.40141 -22.62249 -22.46464 -19.72715 -18.61320 -18.41084 -17.80773 -17.06050 -16.48993 -16.22500 -15.84675 -15.24928 -14.87380 -14.52756 -14.30398 -14.11266 -13.99955 -13.33150 -13.25487 -13.08938 -12.78943 -12.49979 -11.90748 -11.75558 -11.70511 -11.24779 -11.19637 -11.05172 -10.96295 -10.89071 -10.74865 -10.55791 -10.42247 -10.23377 -10.14974 -9.95025 -8.94791 -8.75728 -8.46202 -7.81102 -6.14516 -3.89694 0.27008 1.35865 1.55898 1.64119 2.73599 2.99737 3.26971 3.31089 3.33919 3.72164 4.21199 4.38435 4.52132 4.78842 4.81108 4.93638 5.01399 5.06091 5.16817 5.38428 5.50906 5.63757 5.77036 5.88018 5.91365 6.19909 6.21164 6.33681 6.39285 6.48523 6.50177 6.91953 7.06348 7.25549 7.50578 7.68003 7.69402 8.50848 9.06914 9.44477 10.91037 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.004227 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.427327 B = 6622.541078 C = 7091.463981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.853 5.853 3 C -0.304 4.304 4 H 0.090 0.910 5 C 0.041 3.959 6 N -0.880 5.880 7 Si 0.917 3.083 8 H -0.275 1.275 9 H -0.284 1.284 10 H -0.272 1.272 11 S 2.657 3.343 12 O -0.967 6.967 13 O -0.991 6.991 14 C -0.642 4.642 15 C -0.032 4.032 16 C -0.121 4.121 17 C -0.046 4.046 18 C -0.001 4.001 19 C -0.198 4.198 20 C 0.494 3.506 21 O -0.492 6.492 22 O -0.511 6.511 23 C -0.079 4.079 24 C -0.024 4.024 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.018 0.982 28 H 0.266 0.734 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.409 0.591 34 H 0.116 0.884 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -8.651 -16.227 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.688 5.688 3 C -0.437 4.437 4 H 0.108 0.892 5 C -0.165 4.165 6 N -0.519 5.519 7 Si 0.744 3.256 8 H -0.201 1.201 9 H -0.210 1.210 10 H -0.197 1.197 11 S 2.750 3.250 12 O -0.957 6.957 13 O -0.980 6.980 14 C -0.726 4.726 15 C -0.052 4.052 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.020 4.020 19 C -0.217 4.217 20 C 0.338 3.662 21 O -0.380 6.380 22 O -0.322 6.322 23 C -0.098 4.098 24 C -0.043 4.043 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.167 -9.004 -15.432 18.346 hybrid contribution 0.765 0.756 -0.448 1.165 sum 4.932 -8.248 -15.880 18.562 Atomic orbital electron populations 1.21032 0.79831 0.99228 1.00496 1.52497 1.12331 1.17354 1.86607 1.19017 1.05570 0.86656 1.32425 0.89196 1.25343 0.96627 0.99815 0.94695 1.70005 1.20641 1.30717 1.30583 0.86169 0.79510 0.81684 0.78218 1.20089 1.20969 1.19721 1.03303 0.73879 0.73806 0.74030 1.93459 1.42013 1.84725 1.75513 1.93452 1.66279 1.62263 1.76030 1.31654 1.02637 1.09896 1.28383 1.20791 0.97249 0.93098 0.94019 1.21205 0.96623 1.01010 0.95090 1.19100 0.95065 0.97609 0.92847 1.22699 0.95556 0.88938 0.94774 1.22254 0.92451 1.07767 0.99203 1.21203 0.81990 0.74553 0.88431 1.91123 1.80288 1.47670 1.18934 1.85031 1.22462 1.81128 1.43532 1.21076 0.96785 0.97301 0.94667 1.20756 0.94782 0.94978 0.93769 0.93138 0.91084 0.96322 0.92427 0.84412 0.85404 0.83222 0.83531 0.73413 0.86557 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.30 8.50 59.85 0.51 3.81 16 2 N -0.85 -21.48 3.27 -66.68 -0.22 -21.70 16 3 C -0.30 -8.09 8.98 -15.06 -0.14 -8.22 16 4 H 0.09 2.30 7.84 -52.48 -0.41 1.89 16 5 C 0.04 1.09 5.16 -17.43 -0.09 1.00 16 6 N -0.88 -24.09 11.04 55.49 0.61 -23.48 16 7 Si 0.92 20.54 29.56 -169.99 -5.02 15.52 16 8 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 S 2.66 62.66 5.62 -107.50 -0.60 62.06 16 12 O -0.97 -25.21 16.48 -57.17 -0.94 -26.15 16 13 O -0.99 -24.36 16.43 -57.17 -0.94 -25.30 16 14 C -0.64 -12.74 5.98 -39.46 -0.24 -12.98 16 15 C -0.03 -0.56 9.50 -39.65 -0.38 -0.94 16 16 C -0.12 -1.70 9.80 -39.10 -0.38 -2.09 16 17 C -0.05 -0.63 4.44 -105.06 -0.47 -1.09 16 18 C 0.00 -0.01 9.80 -37.13 -0.36 -0.38 16 19 C -0.20 -1.71 10.04 -37.55 -0.38 -2.08 16 20 C 0.49 5.44 7.32 33.95 0.25 5.69 16 21 O -0.49 -7.32 13.10 -19.36 -0.25 -7.58 16 22 O -0.51 -4.36 13.56 -41.04 -0.56 -4.91 16 23 C -0.08 -1.24 6.71 -39.11 -0.26 -1.50 16 24 C -0.02 -0.44 9.50 -39.65 -0.38 -0.82 16 25 H 0.05 1.26 7.75 -51.93 -0.40 0.85 16 26 H 0.07 1.69 7.17 -51.93 -0.37 1.32 16 27 H 0.02 0.37 7.97 -51.93 -0.41 -0.04 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.14 2.21 7.59 -52.49 -0.40 1.81 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.41 2.07 8.98 45.56 0.41 2.48 16 34 H 0.12 1.58 7.23 -52.49 -0.38 1.20 16 35 H 0.14 2.55 7.60 -52.48 -0.40 2.15 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -35.34 320.71 -8.17 -43.51 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -2.77 Total: 2.79 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.31 Total: -19.60 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.39 Total: -45.18 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -2.69 Total: -63.94 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 62.66 SS G_CDS: -0.60 Total: 62.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.34 -8.17 -43.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610107925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.421 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds