Wall clock time and date at job start Tue Mar 31 2020 09:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99441 * 2 1 4 4 H 1.08000 * 119.99911 * 203.09383 * 3 2 1 5 5 C 1.38808 * 120.00231 * 23.10561 * 3 2 1 6 6 N 1.31623 * 120.00217 * 11.88792 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 191.89322 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 S 1.65594 * 120.00296 * 180.02562 * 2 1 3 12 12 O 1.42097 * 106.40127 * 203.53794 * 11 2 1 13 13 O 1.42103 * 106.40114 * 336.45568 * 11 2 1 14 14 C 1.76197 * 107.22207 * 89.99485 * 11 2 1 15 15 C 1.38408 * 119.82743 * 269.72538 * 14 11 2 16 16 C 1.37889 * 120.16880 * 179.76102 * 15 14 11 17 17 C 1.39852 * 119.82708 * 0.51193 * 16 15 14 18 18 C 1.47167 * 120.17070 * 179.71884 * 17 16 15 19 19 C 1.34915 * 120.00135 * 0.02562 * 18 17 16 20 20 C 1.46233 * 120.00089 * 179.97438 * 19 18 17 21 21 O 1.21626 * 120.00326 * 0.02562 * 20 19 18 22 22 O 1.34915 * 120.00089 * 179.97438 * 20 19 18 23 23 C 1.39858 * 119.65576 * 359.74621 * 17 16 15 24 24 C 1.37884 * 119.82584 * 359.97438 * 23 17 16 25 25 H 1.09001 * 109.47035 * 275.04977 * 1 2 3 26 26 H 1.08995 * 109.47490 * 35.05689 * 1 2 3 27 27 H 1.09001 * 109.47201 * 155.05393 * 1 2 3 28 28 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 29 29 H 1.08000 * 119.91039 * 359.97438 * 15 14 11 30 30 H 1.08000 * 120.08404 * 180.27231 * 16 15 14 31 31 H 1.08004 * 120.00162 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.00142 * 359.97438 * 19 18 17 33 33 H 0.96696 * 113.99646 * 180.02562 * 22 20 19 34 34 H 1.08002 * 120.08315 * 180.02562 * 23 17 16 35 35 H 1.08000 * 119.91700 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1647 1.2235 -0.3669 5 6 1.5390 2.3398 0.4717 6 7 0.4021 2.2607 1.1303 7 14 2.3307 4.0050 0.1719 8 1 3.5945 3.8229 -0.5862 9 1 1.4027 4.8608 -0.6102 10 1 2.6246 4.6551 1.4743 11 16 2.2931 -1.4340 -0.0006 12 8 3.5760 -1.1568 0.5439 13 8 1.4114 -2.4067 0.5435 14 6 2.5538 -1.8851 -1.6838 15 6 1.6186 -2.6666 -2.3399 16 6 1.8131 -3.0196 -3.6586 17 6 2.9642 -2.5950 -4.3298 18 6 3.1825 -2.9725 -5.7354 19 6 2.2707 -3.7298 -6.3799 20 6 2.4873 -4.1045 -7.7767 21 8 3.4897 -3.7339 -8.3574 22 8 1.5758 -4.8623 -8.4210 23 6 3.9071 -1.8101 -3.6582 24 6 3.6953 -1.4605 -2.3414 25 1 -0.3633 0.0905 1.0237 26 1 -0.3634 0.8412 -0.5902 27 1 -0.3634 -0.9318 -0.4334 28 1 -0.0244 3.0671 1.4602 29 1 0.7326 -2.9977 -1.8187 30 1 1.0804 -3.6257 -4.1705 31 1 4.0726 -2.6434 -6.2510 32 1 1.3808 -4.0593 -5.8642 33 1 1.8060 -5.0584 -9.3395 34 1 4.7982 -1.4780 -4.1701 35 1 4.4226 -0.8548 -1.8212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610107926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:22 Heat of formation + Delta-G solvation = -107.853590 kcal Electronic energy + Delta-G solvation = -22747.548548 eV Core-core repulsion = 19031.664143 eV Total energy + Delta-G solvation = -3715.884405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.47019 -39.24287 -36.48566 -36.37344 -35.49479 -34.95325 -34.46781 -31.19228 -31.13976 -30.14021 -26.30363 -25.47961 -23.47658 -23.01546 -22.26972 -19.71791 -18.81448 -18.56249 -17.88127 -17.25497 -16.76702 -16.40352 -15.87083 -15.45814 -15.36427 -14.55457 -14.48012 -14.28764 -13.82371 -13.52132 -13.23871 -13.15403 -12.86394 -12.54871 -12.12599 -11.96712 -11.90075 -11.33325 -11.27913 -11.21944 -11.07521 -10.97398 -10.94905 -10.83104 -10.62586 -10.36974 -10.32329 -10.03473 -9.13518 -9.03652 -8.72639 -7.95561 -6.15126 -3.88376 -0.03280 1.26949 1.34812 1.47898 2.64409 2.82451 3.21659 3.29838 3.32829 3.57415 4.07802 4.39253 4.44236 4.50502 4.63639 4.78836 4.84055 5.00632 5.07725 5.15140 5.33362 5.52039 5.64307 5.72962 5.82544 5.97865 6.02959 6.14859 6.22603 6.27098 6.34019 6.80999 6.87054 7.15608 7.48997 7.50428 7.64886 8.44428 9.00503 9.37551 10.88702 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.003445 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.379806 B = 8126.835135 C = 8678.427850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.850 5.850 3 C -0.320 4.320 4 H 0.097 0.903 5 C 0.041 3.959 6 N -0.885 5.885 7 Si 0.917 3.083 8 H -0.270 1.270 9 H -0.283 1.283 10 H -0.282 1.282 11 S 2.671 3.329 12 O -0.961 6.961 13 O -0.981 6.981 14 C -0.648 4.648 15 C -0.028 4.028 16 C -0.121 4.121 17 C -0.051 4.051 18 C 0.005 3.995 19 C -0.204 4.204 20 C 0.512 3.488 21 O -0.522 6.522 22 O -0.504 6.504 23 C -0.112 4.112 24 C -0.020 4.020 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.135 0.865 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -9.830 -13.983 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.685 5.685 3 C -0.449 4.449 4 H 0.115 0.885 5 C -0.164 4.164 6 N -0.525 5.525 7 Si 0.744 3.256 8 H -0.194 1.194 9 H -0.209 1.209 10 H -0.208 1.208 11 S 2.759 3.241 12 O -0.951 6.951 13 O -0.971 6.971 14 C -0.730 4.730 15 C -0.047 4.047 16 C -0.139 4.139 17 C -0.051 4.051 18 C -0.014 4.014 19 C -0.222 4.222 20 C 0.358 3.642 21 O -0.413 6.413 22 O -0.314 6.314 23 C -0.131 4.131 24 C -0.039 4.039 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.266 0.734 34 H 0.153 0.847 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.546 -10.039 -12.959 16.466 hybrid contribution 0.297 0.907 -1.598 1.861 sum 1.843 -9.133 -14.557 17.283 Atomic orbital electron populations 1.21144 0.79581 0.97769 1.02634 1.52657 1.12855 1.17938 1.85011 1.19137 0.98873 0.84751 1.42182 0.88490 1.25124 0.96586 0.99135 0.95552 1.70068 1.18121 1.28578 1.35764 0.86042 0.79036 0.82403 0.78131 1.19436 1.20892 1.20824 1.02376 0.73736 0.73298 0.74697 1.93492 1.41218 1.84742 1.75680 1.93493 1.66276 1.61155 1.76142 1.32065 1.02340 1.09178 1.29434 1.20907 0.97275 0.92636 0.93920 1.21487 0.97002 1.00508 0.94919 1.19103 0.95468 0.98096 0.92423 1.22590 0.97058 0.89690 0.92019 1.22186 1.03380 1.05105 0.91557 1.20969 0.80042 0.74890 0.88250 1.90948 1.28795 1.52862 1.68705 1.85062 1.49207 1.65861 1.31303 1.21468 0.98940 0.97820 0.94879 1.20947 0.94840 0.94308 0.93828 0.91798 0.91919 0.95844 0.92633 0.83982 0.84833 0.84140 0.83782 0.73385 0.84724 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.04 8.60 59.85 0.51 3.55 16 2 N -0.85 -20.18 3.31 -66.69 -0.22 -20.40 16 3 C -0.32 -8.19 9.17 -15.06 -0.14 -8.32 16 4 H 0.10 2.39 7.68 -52.49 -0.40 1.99 16 5 C 0.04 1.05 5.12 -17.43 -0.09 0.96 16 6 N -0.89 -23.62 10.65 55.49 0.59 -23.03 16 7 Si 0.92 20.14 29.57 -169.99 -5.03 15.11 16 8 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 S 2.67 57.06 5.60 -107.50 -0.60 56.46 16 12 O -0.96 -22.74 16.36 -57.17 -0.94 -23.68 16 13 O -0.98 -21.90 16.23 -57.17 -0.93 -22.83 16 14 C -0.65 -11.25 5.98 -39.46 -0.24 -11.49 16 15 C -0.03 -0.42 9.50 -39.65 -0.38 -0.80 16 16 C -0.12 -1.49 9.41 -39.11 -0.37 -1.85 16 17 C -0.05 -0.61 5.87 -105.06 -0.62 -1.23 16 18 C 0.00 0.05 9.46 -37.14 -0.35 -0.30 16 19 C -0.20 -1.90 9.53 -37.55 -0.36 -2.25 16 20 C 0.51 5.07 8.23 33.94 0.28 5.35 16 21 O -0.52 -6.61 16.96 -19.36 -0.33 -6.93 16 22 O -0.50 -3.74 13.56 -41.08 -0.56 -4.29 16 23 C -0.11 -1.44 9.80 -39.11 -0.38 -1.82 16 24 C -0.02 -0.32 9.50 -39.65 -0.38 -0.69 16 25 H 0.06 1.55 7.35 -51.93 -0.38 1.17 16 26 H 0.06 1.44 7.31 -51.93 -0.38 1.06 16 27 H 0.02 0.44 7.61 -51.93 -0.40 0.05 16 28 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.14 1.97 7.59 -52.49 -0.40 1.57 16 30 H 0.13 1.21 6.17 -52.49 -0.32 0.89 16 31 H 0.14 1.32 7.52 -52.48 -0.39 0.92 16 32 H 0.14 1.11 6.08 -52.49 -0.32 0.80 16 33 H 0.41 1.28 8.98 45.56 0.41 1.69 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.15 2.23 7.60 -52.49 -0.40 1.83 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -33.21 323.98 -8.17 -41.38 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.54 Total: 2.23 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.50 Total: -18.90 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.37 Total: -43.43 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -2.75 Total: -57.73 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.60 Total: 56.46 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.21 -8.17 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610107926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.476 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds