Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47609 * 2 1 4 4 C 1.50702 * 109.47151 * 239.99137 * 2 1 3 5 5 H 1.07995 * 120.00403 * 245.46246 * 4 2 1 6 6 C 1.37881 * 119.99586 * 65.46677 * 4 2 1 7 7 N 1.31513 * 119.99899 * 198.13802 * 6 4 2 8 8 Si 1.86798 * 120.00169 * 18.41877 * 6 4 2 9 9 H 1.48493 * 109.47373 * 179.72532 * 8 6 4 10 10 H 1.48507 * 109.47070 * 299.72482 * 8 6 4 11 11 H 1.48499 * 109.47302 * 59.71822 * 8 6 4 12 12 N 1.46506 * 109.46664 * 119.99947 * 2 1 3 13 13 C 1.46495 * 120.00347 * 59.99920 * 12 2 1 14 14 C 1.34779 * 119.99732 * 240.00103 * 12 2 1 15 15 O 1.21358 * 119.99890 * 5.66051 * 14 12 2 16 16 C 1.49367 * 120.00120 * 185.66107 * 14 12 2 17 17 O 1.21359 * 119.99736 * 5.76095 * 16 14 12 18 18 N 1.34775 * 120.00103 * 185.75564 * 16 14 12 19 19 C 1.39246 * 120.00010 * 185.19202 * 18 16 14 20 20 C 1.39050 * 119.69135 * 186.20238 * 19 18 16 21 21 C 1.38386 * 119.12992 * 179.97438 * 20 19 18 22 22 C 1.38783 * 118.51263 * 359.97438 * 21 20 19 23 23 C 1.38278 * 119.30208 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 119.59015 * 180.02562 * 23 22 21 25 25 N 1.32004 * 120.81678 * 359.73738 * 23 22 21 26 26 H 1.09001 * 109.46416 * 54.29699 * 1 2 3 27 27 H 1.09000 * 109.46995 * 174.29110 * 1 2 3 28 28 H 1.08992 * 109.47383 * 294.29341 * 1 2 3 29 29 H 0.97008 * 119.99869 * 355.24240 * 7 6 4 30 30 H 1.08991 * 109.47404 * 95.65383 * 13 12 2 31 31 H 1.08999 * 109.47193 * 215.65817 * 13 12 2 32 32 H 1.09006 * 109.47037 * 335.65102 * 13 12 2 33 33 H 0.97002 * 120.00092 * 5.19617 * 18 16 14 34 34 H 1.08004 * 120.43249 * 359.96102 * 20 19 18 35 35 H 1.07999 * 120.74947 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.35160 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1776 -2.4796 7 7 1.9015 -0.9355 -3.5490 8 14 1.3286 1.6229 -2.6536 9 1 1.1346 1.9475 -4.0896 10 1 0.0677 1.8817 -1.9129 11 1 2.4128 2.4710 -2.0964 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4282 14 6 2.7931 -0.0356 2.0835 15 8 3.0019 1.1520 1.9461 16 6 3.3948 -0.7713 3.2358 17 8 3.2734 -1.9761 3.3164 18 7 4.0725 -0.0971 4.1858 19 6 4.7249 -0.7918 5.2010 20 6 5.3121 -0.0905 6.2483 21 6 5.9571 -0.7926 7.2514 22 6 5.9925 -2.1778 7.1730 23 6 5.3874 -2.8107 6.1028 24 17 5.4266 -4.5431 5.9976 25 7 4.7755 -2.1143 5.1631 26 1 -0.3632 0.5998 -0.8346 27 1 -0.3633 -1.0226 -0.1022 28 1 -0.3634 0.4228 0.9366 29 1 2.2142 -1.8500 -3.4661 30 1 2.4646 -2.7354 1.0606 31 1 1.5252 -2.2610 2.4961 32 1 0.7396 -2.3266 0.9003 33 1 4.1058 0.8720 4.1624 34 1 5.2657 0.9881 6.2784 35 1 6.4217 -0.2744 8.0772 36 1 6.4881 -2.7552 7.9393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285266607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = -7.957100 kcal Electronic energy + Delta-G solvation = -23136.498115 eV Core-core repulsion = 19455.194592 eV Total energy + Delta-G solvation = -3681.303523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22643 -39.95027 -38.15335 -36.86118 -36.05458 -34.87020 -32.82713 -32.77012 -30.39583 -30.22423 -26.49748 -25.50238 -24.73225 -24.04826 -22.98088 -20.83300 -19.37126 -18.32588 -17.66104 -17.28174 -16.78749 -16.21623 -16.15217 -15.92886 -15.15784 -14.89937 -14.86222 -13.97383 -13.78755 -13.63024 -13.27077 -12.83909 -12.61132 -12.59848 -12.24956 -12.02210 -11.80469 -11.74044 -11.46196 -11.35807 -11.00011 -10.84872 -10.55792 -10.07159 -10.02867 -9.90080 -9.81870 -9.15331 -8.89956 -8.58882 -8.38970 -7.94871 -6.56023 -4.20118 0.54704 0.84955 1.55220 1.80932 2.36157 3.28596 3.32169 3.43374 3.55656 3.64341 3.69291 4.21374 4.40405 4.49069 4.55953 4.68995 4.80975 4.90882 5.16407 5.39785 5.69930 5.76166 5.84497 6.09227 6.24374 6.27648 6.34611 6.44705 6.52067 6.70026 6.83614 6.96427 7.19828 7.48264 7.68556 7.87410 8.08663 8.27507 8.40202 8.81076 9.48626 10.82601 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.003320 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.090134 B = 8431.047168 C = 9089.478175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.616 4.616 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 1.040 2.960 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.278 1.278 12 N -0.545 5.545 13 C 0.087 3.913 14 C 0.496 3.504 15 O -0.539 6.539 16 C 0.498 3.502 17 O -0.441 6.441 18 N -0.641 5.641 19 C 0.388 3.612 20 C -0.204 4.204 21 C -0.033 4.033 22 C -0.191 4.191 23 C 0.211 3.789 24 Cl -0.027 7.027 25 N -0.476 5.476 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.269 0.731 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.431 0.569 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 0.253 23.227 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.075 0.925 4 C -0.654 4.654 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.529 5.529 8 Si 0.868 3.132 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.275 5.275 13 C -0.056 4.056 14 C 0.277 3.723 15 O -0.419 6.419 16 C 0.280 3.720 17 O -0.308 6.308 18 N -0.290 5.290 19 C 0.156 3.844 20 C -0.227 4.227 21 C -0.060 4.060 22 C -0.214 4.214 23 C 0.045 3.955 24 Cl 0.001 6.999 25 N -0.194 5.194 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.270 0.730 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.247 0.527 21.203 21.849 hybrid contribution 0.963 -0.668 1.643 2.018 sum 6.210 -0.142 22.846 23.675 Atomic orbital electron populations 1.22538 0.98007 1.01666 0.99926 1.19422 0.90981 0.94671 0.81773 0.92483 1.22144 1.41618 1.10898 0.90710 0.91857 1.25694 0.94300 1.05114 0.91721 1.70869 1.41039 1.09572 1.31442 0.84128 0.77451 0.75298 0.76358 1.20808 1.19809 1.20422 1.47991 1.45287 1.12834 1.21374 1.21920 1.01275 0.81057 1.01346 1.19638 0.81765 0.87187 0.83729 1.90705 1.61265 1.14434 1.75506 1.20938 0.79626 0.88084 0.83393 1.90838 1.52533 1.13393 1.74015 1.43413 1.49729 1.11644 1.24257 1.18180 0.91059 0.87362 0.87778 1.21598 1.03972 1.01830 0.95322 1.21342 0.94399 0.92980 0.97231 1.21742 1.04544 0.95377 0.99733 1.21418 0.94947 0.87768 0.91386 1.98420 1.96727 1.06800 1.97917 1.66767 1.18878 1.06287 1.27426 0.91332 0.92809 0.95213 0.92037 0.92346 0.90813 0.90978 0.72952 0.83525 0.83259 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.74 37.16 0.32 -3.16 16 2 C 0.23 5.58 2.21 -69.08 -0.15 5.43 16 3 H 0.06 1.45 5.56 -51.93 -0.29 1.16 16 4 C -0.62 -16.97 8.67 -34.44 -0.30 -17.27 16 5 H 0.06 1.89 7.80 -52.49 -0.41 1.48 16 6 C 0.04 1.08 5.34 -17.82 -0.10 0.99 16 7 N -0.90 -26.87 13.70 55.43 0.76 -26.11 16 8 Si 1.04 24.70 26.46 -169.99 -4.50 20.20 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -5.86 5.51 56.52 0.31 -5.55 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.54 -11.76 2.75 -175.80 -0.48 -12.24 16 13 C 0.09 1.67 8.37 59.84 0.50 2.17 16 14 C 0.50 10.03 7.72 -11.62 -0.09 9.94 16 15 O -0.54 -11.61 15.85 5.49 0.09 -11.52 16 16 C 0.50 8.72 7.65 -11.63 -0.09 8.63 16 17 O -0.44 -8.45 11.69 5.49 0.06 -8.38 16 18 N -0.64 -8.76 5.36 -11.86 -0.06 -8.83 16 19 C 0.39 4.98 7.40 -154.82 -1.15 3.83 16 20 C -0.20 -1.73 9.94 -39.23 -0.39 -2.12 16 21 C -0.03 -0.23 10.16 -39.33 -0.40 -0.63 16 22 C -0.19 -1.63 9.87 -39.37 -0.39 -2.01 16 23 C 0.21 2.58 7.27 -17.46 -0.13 2.45 16 24 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 25 N -0.48 -7.16 7.91 -9.50 -0.08 -7.24 16 26 H 0.07 1.48 4.85 -51.93 -0.25 1.23 16 27 H 0.05 1.11 6.89 -51.93 -0.36 0.76 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16 30 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 32 H 0.07 1.34 6.55 -51.93 -0.34 1.00 16 33 H 0.43 4.76 8.21 -40.82 -0.33 4.43 16 34 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -33.43 320.87 -6.88 -40.31 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.65 Total: 2.56 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.35 Total: 8.24 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.14 Total: -54.42 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.15 Total: -19.91 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.50 Total: 20.20 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.43 -6.88 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285266607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.355 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds