Wall clock time and date at job start Tue Mar 31 2020 10:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76195 * 103.00212 * 2 1 4 4 C 1.38792 * 120.10444 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98542 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.20343 * 359.72435 * 5 4 3 7 7 C 1.38256 * 120.20933 * 0.55149 * 6 5 4 8 8 C 1.38647 * 120.00759 * 359.45041 * 7 6 5 9 9 N 1.40139 * 120.10145 * 180.29355 * 8 7 6 10 10 C 1.34777 * 119.99512 * 24.81984 * 9 8 7 11 11 O 1.21298 * 120.00418 * 5.51944 * 10 9 8 12 12 C 1.50706 * 119.99523 * 185.52649 * 10 9 8 13 13 H 1.08996 * 109.47122 * 39.99874 * 12 10 9 14 14 C 1.52999 * 109.47128 * 279.99510 * 12 10 9 15 15 S 1.81401 * 109.46876 * 159.99777 * 12 10 9 16 16 C 1.81398 * 103.00117 * 184.99616 * 15 12 10 17 17 C 1.50692 * 109.47335 * 179.97438 * 16 15 12 18 18 H 1.08000 * 120.00437 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47142 * 59.99599 * 21 19 17 23 23 H 1.48495 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47061 * 299.99926 * 21 19 17 25 25 H 1.08997 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47142 * 300.00403 * 1 2 3 27 27 H 1.09005 * 109.47023 * 59.99905 * 1 2 3 28 28 H 1.07992 * 120.00600 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.89460 * 179.97438 * 5 4 3 30 30 H 1.08007 * 119.89901 * 180.27682 * 6 5 4 31 31 H 1.08003 * 119.99674 * 179.71932 * 7 6 5 32 32 H 0.96996 * 120.00403 * 204.81416 * 9 8 7 33 33 H 1.09002 * 109.47077 * 300.00431 * 14 12 10 34 34 H 1.09007 * 109.47166 * 60.00008 * 14 12 10 35 35 H 1.09001 * 109.47429 * 180.02562 * 14 12 10 36 36 H 1.09000 * 109.47417 * 300.00296 * 16 15 12 37 37 H 1.09009 * 109.46820 * 59.99804 * 16 15 12 38 38 H 0.96999 * 120.00094 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6652 -0.0005 5 6 1.5108 4.0111 -0.0011 6 6 2.8327 4.4173 0.0047 7 6 3.8487 3.4796 -0.0005 8 6 3.5439 2.1271 0.0000 9 7 4.5721 1.1749 0.0010 10 6 5.7861 1.4947 0.4914 11 8 5.9614 2.5710 1.0226 12 6 6.9258 0.5150 0.3796 13 1 6.8925 0.0286 -0.5952 14 6 6.8013 -0.5400 1.4806 15 16 8.5008 1.3964 0.5620 16 6 9.7318 0.1011 0.2498 17 6 11.1161 0.6852 0.3658 18 1 11.2428 1.7309 0.6040 19 6 12.2210 -0.1155 0.1679 20 7 12.0668 -1.3888 -0.1226 21 14 13.9370 0.6084 0.3124 22 1 14.1302 1.1548 1.6796 23 1 14.9447 -0.4520 0.0567 24 1 14.1002 1.6976 -0.6836 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1637 2.3515 -0.0014 29 1 0.7211 4.7479 -0.0019 30 1 3.0723 5.4705 0.0088 31 1 4.8799 3.8008 -0.0006 32 1 4.4102 0.2858 -0.3512 33 1 6.8346 -0.0535 2.4555 34 1 5.8548 -1.0696 1.3711 35 1 7.6258 -1.2484 1.4001 36 1 9.6118 -0.6981 0.9812 37 1 9.5901 -0.3005 -0.7537 38 1 12.8441 -1.9520 -0.2623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:04 Heat of formation + Delta-G solvation = -13.203986 kcal Electronic energy + Delta-G solvation = -20213.082718 eV Core-core repulsion = 17079.888594 eV Total energy + Delta-G solvation = -3133.194125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.075 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62081 -38.51622 -34.89013 -33.24240 -32.97664 -31.50393 -29.59092 -29.18522 -28.48809 -24.77461 -23.29860 -23.14215 -22.51144 -20.33543 -18.49878 -17.29769 -17.15398 -16.43757 -15.77185 -15.40918 -15.28216 -14.89113 -14.58296 -14.34238 -14.19931 -14.05088 -13.90464 -13.33552 -13.18781 -12.85758 -12.51118 -12.37338 -12.33709 -12.10522 -11.72827 -11.61083 -11.48872 -10.84236 -10.76545 -10.67292 -10.50475 -9.96550 -9.90611 -9.67080 -9.55533 -8.78307 -8.60950 -8.47509 -7.55725 -6.69157 -6.19899 -4.23784 0.96691 1.14385 1.17010 2.06019 2.21701 2.64433 3.07513 3.29312 3.32035 3.36792 3.58760 3.79759 4.36021 4.56166 4.65033 4.65418 4.66501 4.86343 5.07350 5.12586 5.17549 5.20857 5.27050 5.30153 5.34638 5.64201 5.71452 5.92615 6.00546 6.04282 6.26232 6.31522 6.39270 6.81468 7.07208 7.09529 7.23295 7.74924 8.00661 8.06348 8.77880 9.39271 10.91478 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.002784 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.709701 B =10054.768753 C =10883.086035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.124 6.124 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.099 4.099 7 C -0.117 4.117 8 C 0.181 3.819 9 N -0.669 5.669 10 C 0.540 3.460 11 O -0.491 6.491 12 C -0.098 4.098 13 H 0.102 0.898 14 C -0.140 4.140 15 S -0.232 6.232 16 C 0.078 3.922 17 C -0.512 4.512 18 H 0.067 0.933 19 C 0.066 3.934 20 N -0.893 5.893 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.412 0.588 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.210 2.893 -1.195 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.116 5.884 3 C -0.238 4.238 4 C -0.137 4.137 5 C -0.147 4.147 6 C -0.120 4.120 7 C -0.138 4.138 8 C 0.080 3.920 9 N -0.314 5.314 10 C 0.326 3.674 11 O -0.363 6.363 12 C -0.229 4.229 13 H 0.120 0.880 14 C -0.199 4.199 15 S -0.006 6.006 16 C -0.069 4.069 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.172 0.828 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.088 3.469 -0.611 24.344 hybrid contribution -0.297 -0.487 -0.510 0.765 sum -24.385 2.983 -1.121 24.592 Atomic orbital electron populations 1.23651 0.94318 1.07129 1.05677 1.85309 1.07063 1.02855 1.93154 1.21378 0.94667 0.97044 1.10744 1.20907 0.97499 0.92955 1.02363 1.20998 0.96711 0.95090 1.01896 1.21147 0.92228 0.99721 0.98858 1.21497 1.01940 0.90387 1.00023 1.17307 0.85390 0.89547 0.99786 1.43654 1.10199 1.15504 1.62016 1.20241 0.82399 0.87930 0.76784 1.90683 1.82241 1.23263 1.40163 1.23182 0.96817 0.99090 1.03833 0.87982 1.21990 1.02585 0.97529 0.97762 1.87167 0.96592 1.22758 1.94039 1.21187 0.93328 0.92730 0.99660 1.20600 0.88474 0.96590 1.49462 0.91480 1.24946 0.99458 0.94743 0.94601 1.69937 1.30927 1.05084 1.47185 0.86408 0.82558 0.78684 0.79005 1.19858 1.21067 1.19879 0.87335 0.89673 0.89704 0.85729 0.85753 0.85334 0.82838 0.75129 0.90947 0.92386 0.90225 0.94317 0.94687 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.15 101.05 0.92 0.14 16 2 S -0.12 -1.17 21.27 -107.50 -2.29 -3.46 16 3 C -0.12 -1.40 6.12 -38.90 -0.24 -1.64 16 4 C -0.11 -1.09 9.36 -39.39 -0.37 -1.45 16 5 C -0.13 -1.19 10.04 -39.58 -0.40 -1.58 16 6 C -0.10 -1.08 10.04 -39.55 -0.40 -1.48 16 7 C -0.12 -1.60 8.72 -39.42 -0.34 -1.95 16 8 C 0.18 2.43 6.44 -83.43 -0.54 1.89 16 9 N -0.67 -9.04 5.17 -9.70 -0.05 -9.09 16 10 C 0.54 8.92 6.81 -10.98 -0.07 8.84 16 11 O -0.49 -9.56 13.22 5.54 0.07 -9.49 16 12 C -0.10 -1.66 3.18 -27.88 -0.09 -1.75 16 13 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 14 C -0.14 -2.12 9.08 37.16 0.34 -1.78 16 15 S -0.23 -5.19 20.32 -107.50 -2.18 -7.37 16 16 C 0.08 1.99 5.39 36.00 0.19 2.19 16 17 C -0.51 -14.42 9.13 -34.44 -0.31 -14.73 16 18 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 20 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 21 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.43 7.75 -51.92 -0.40 0.03 16 27 H 0.08 0.41 7.75 -51.92 -0.40 0.00 16 28 H 0.12 0.87 5.88 -52.49 -0.31 0.56 16 29 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.15 2.41 5.79 -52.48 -0.30 2.11 16 32 H 0.41 4.70 7.65 -40.82 -0.31 4.38 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.29 6.92 -51.93 -0.36 0.93 16 36 H 0.04 1.01 7.14 -51.92 -0.37 0.64 16 37 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -31.75 344.77 -9.90 -41.65 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.96 Total: 2.69 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.40 Total: -11.54 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.69 Total: -34.06 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -6.36 SS G_CDS: -4.47 Total: -10.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.75 -9.90 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.441 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds