Wall clock time and date at job start Tue Mar 31 2020 10:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76195 * 103.00212 * 2 1 4 4 C 1.38792 * 120.10444 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98542 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.20343 * 359.72435 * 5 4 3 7 7 C 1.38256 * 120.20933 * 0.55149 * 6 5 4 8 8 C 1.38647 * 120.00759 * 359.45041 * 7 6 5 9 9 N 1.40139 * 120.10145 * 180.29355 * 8 7 6 10 10 C 1.34777 * 119.99512 * 24.81984 * 9 8 7 11 11 O 1.21298 * 120.00418 * 5.51944 * 10 9 8 12 12 C 1.50706 * 119.99523 * 185.52649 * 10 9 8 13 13 H 1.08996 * 109.47122 * 39.99874 * 12 10 9 14 14 C 1.52999 * 109.47128 * 279.99510 * 12 10 9 15 15 S 1.81401 * 109.46876 * 159.99777 * 12 10 9 16 16 C 1.81398 * 103.00117 * 184.99616 * 15 12 10 17 17 C 1.50692 * 109.47335 * 179.97438 * 16 15 12 18 18 H 1.08000 * 120.00437 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47142 * 59.99599 * 21 19 17 23 23 H 1.48495 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47061 * 299.99926 * 21 19 17 25 25 H 1.08997 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47142 * 300.00403 * 1 2 3 27 27 H 1.09005 * 109.47023 * 59.99905 * 1 2 3 28 28 H 1.07992 * 120.00600 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.89460 * 179.97438 * 5 4 3 30 30 H 1.08007 * 119.89901 * 180.27682 * 6 5 4 31 31 H 1.08003 * 119.99674 * 179.71932 * 7 6 5 32 32 H 0.96996 * 120.00403 * 204.81416 * 9 8 7 33 33 H 1.09002 * 109.47077 * 300.00431 * 14 12 10 34 34 H 1.09007 * 109.47166 * 60.00008 * 14 12 10 35 35 H 1.09001 * 109.47429 * 180.02562 * 14 12 10 36 36 H 1.09000 * 109.47417 * 300.00296 * 16 15 12 37 37 H 1.09009 * 109.46820 * 59.99804 * 16 15 12 38 38 H 0.96999 * 120.00094 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6652 -0.0005 5 6 1.5108 4.0111 -0.0011 6 6 2.8327 4.4173 0.0047 7 6 3.8487 3.4796 -0.0005 8 6 3.5439 2.1271 0.0000 9 7 4.5721 1.1749 0.0010 10 6 5.7861 1.4947 0.4914 11 8 5.9614 2.5710 1.0226 12 6 6.9258 0.5150 0.3796 13 1 6.8925 0.0286 -0.5952 14 6 6.8013 -0.5400 1.4806 15 16 8.5008 1.3964 0.5620 16 6 9.7318 0.1011 0.2498 17 6 11.1161 0.6852 0.3658 18 1 11.2428 1.7309 0.6040 19 6 12.2210 -0.1155 0.1679 20 7 12.0668 -1.3888 -0.1226 21 14 13.9370 0.6084 0.3124 22 1 14.1302 1.1548 1.6796 23 1 14.9447 -0.4520 0.0567 24 1 14.1002 1.6976 -0.6836 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1637 2.3515 -0.0014 29 1 0.7211 4.7479 -0.0019 30 1 3.0723 5.4705 0.0088 31 1 4.8799 3.8008 -0.0006 32 1 4.4102 0.2858 -0.3512 33 1 6.8346 -0.0535 2.4555 34 1 5.8548 -1.0696 1.3711 35 1 7.6258 -1.2484 1.4001 36 1 9.6118 -0.6981 0.9812 37 1 9.5901 -0.3005 -0.7537 38 1 12.8441 -1.9520 -0.2623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:04 Heat of formation + Delta-G solvation = -31.283314 kcal Electronic energy + Delta-G solvation = -20213.866697 eV Core-core repulsion = 17079.888594 eV Total energy + Delta-G solvation = -3133.978103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.075 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75961 -39.52213 -36.03420 -35.30527 -34.36154 -32.30301 -30.73731 -30.40904 -29.67179 -26.02400 -25.23671 -24.18724 -23.51639 -21.52494 -19.52168 -18.69651 -18.35193 -18.01355 -17.18905 -16.60213 -16.50993 -16.23721 -15.94151 -15.26627 -15.16312 -14.89941 -14.81044 -14.74831 -14.46537 -14.29120 -14.02203 -13.66480 -13.38772 -13.32277 -13.03879 -12.93763 -12.70230 -12.56464 -12.39600 -11.89079 -11.70204 -11.59087 -11.22045 -10.95545 -10.73728 -10.70113 -10.60959 -9.40196 -8.53239 -8.33578 -8.32597 -6.45823 0.07735 0.26433 0.47398 0.67593 1.37434 1.40230 1.43001 1.46162 1.51727 1.85845 1.98022 2.37137 2.71375 3.01363 3.40303 3.77888 3.80097 3.92492 4.09974 4.27087 4.29736 4.33918 4.38684 4.45184 4.54721 4.63622 4.79683 4.88942 4.92981 4.94468 5.06341 5.09904 5.21793 5.36179 5.53179 5.56983 5.89579 5.92360 6.14907 6.60348 6.84895 7.21648 8.78243 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.002784 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.709701 B =10054.768753 C =10883.086035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.153 6.153 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.107 4.107 7 C -0.142 4.142 8 C 0.148 3.852 9 N -0.652 5.652 10 C 0.543 3.457 11 O -0.528 6.528 12 C -0.085 4.085 13 H 0.121 0.879 14 C -0.134 4.134 15 S -0.265 6.265 16 C 0.090 3.910 17 C -0.540 4.540 18 H 0.058 0.942 19 C 0.019 3.981 20 N -0.921 5.921 21 Si 0.973 3.027 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.268 1.268 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.422 0.578 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.018 0.982 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.956 2.858 -1.372 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.088 5.912 3 C -0.239 4.239 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.127 4.127 7 C -0.163 4.163 8 C 0.048 3.952 9 N -0.298 5.298 10 C 0.329 3.671 11 O -0.403 6.403 12 C -0.217 4.217 13 H 0.139 0.861 14 C -0.192 4.192 15 S -0.038 6.038 16 C -0.058 4.058 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.182 4.182 20 N -0.560 5.560 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.193 1.193 25 H 0.144 0.856 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.162 0.838 31 H 0.142 0.858 32 H 0.260 0.740 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.871 3.414 -0.804 27.099 hybrid contribution 0.289 -0.484 -0.481 0.741 sum -26.582 2.930 -1.285 26.773 Atomic orbital electron populations 1.23800 0.90498 1.08689 1.06878 1.85418 1.11253 1.01612 1.92911 1.21573 0.94013 0.98591 1.09700 1.21371 0.98620 0.92738 1.00880 1.21418 0.96647 0.95958 0.99541 1.21389 0.92586 1.00096 0.98668 1.21410 1.01370 0.91526 1.02037 1.17485 0.86213 0.89296 1.02189 1.43370 1.09293 1.16097 1.61024 1.20020 0.83101 0.87138 0.76795 1.90679 1.82928 1.24556 1.42147 1.23213 0.93708 0.99106 1.05640 0.86115 1.21935 1.04150 0.96734 0.96428 1.87122 0.99528 1.23085 1.94098 1.20840 0.93819 0.93037 0.98082 1.20918 0.90227 0.96465 1.50230 0.92400 1.25830 1.03484 0.95081 0.93803 1.70025 1.32314 1.06186 1.47448 0.85383 0.77614 0.78222 0.79177 1.19303 1.19836 1.19286 0.85623 0.88577 0.88308 0.82520 0.82259 0.83775 0.85833 0.73951 0.91906 0.88470 0.91389 0.95649 0.96362 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.15 113.37 1.04 0.07 16 2 S -0.15 -2.52 21.27 -56.49 -1.20 -3.73 16 3 C -0.12 -2.59 6.12 22.71 0.14 -2.45 16 4 C -0.11 -1.78 9.36 22.39 0.21 -1.57 16 5 C -0.12 -1.81 10.04 22.27 0.22 -1.59 16 6 C -0.11 -2.23 10.04 22.29 0.22 -2.00 16 7 C -0.14 -3.99 8.72 22.37 0.20 -3.80 16 8 C 0.15 3.96 6.44 38.22 0.25 4.21 16 9 N -0.65 -17.63 5.17 -303.00 -1.57 -19.20 16 10 C 0.54 18.37 6.81 87.66 0.60 18.96 16 11 O -0.53 -21.52 13.22 -3.08 -0.04 -21.56 16 12 C -0.08 -2.94 3.18 29.85 0.09 -2.84 16 13 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 14 C -0.13 -4.04 9.08 71.98 0.65 -3.39 16 15 S -0.27 -12.33 20.32 -56.49 -1.15 -13.48 16 16 C 0.09 4.77 5.39 71.23 0.38 5.16 16 17 C -0.54 -31.33 9.13 25.60 0.23 -31.10 16 18 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 19 C 0.02 1.09 5.46 84.66 0.46 1.55 16 20 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 21 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 0.55 7.75 -2.39 -0.02 0.54 16 27 H 0.10 0.51 7.75 -2.39 -0.02 0.49 16 28 H 0.16 1.43 5.88 -2.91 -0.02 1.41 16 29 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.12 4.19 5.79 -2.91 -0.02 4.18 16 32 H 0.42 9.33 7.65 -92.71 -0.71 8.62 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.07 2.23 6.92 -2.39 -0.02 2.21 16 36 H 0.03 1.39 7.14 -2.39 -0.02 1.37 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.60 344.77 3.42 -68.18 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.37 Total: 15.87 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.70 Total: -18.78 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.28 Total: -72.69 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.04 Total: -21.56 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -14.86 SS G_CDS: -2.35 Total: -17.21 kcal Total: -71.60 3.42 -68.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.894 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds