Wall clock time and date at job start Tue Mar 31 2020 09:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48493 * 109.47069 * 240.00255 * 3 2 1 5 5 H 1.48500 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46509 * 120.00420 * 3 2 1 7 7 C 1.37876 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52434 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27927 * 177.55951 * 10 9 7 12 12 N 1.46849 * 109.52622 * 300.82050 * 11 10 9 13 13 C 1.39235 * 110.99998 * 185.84126 * 12 11 10 14 14 C 1.39587 * 120.86594 * 299.99359 * 13 12 11 15 15 Cl 1.73598 * 120.47558 * 0.05137 * 14 13 12 16 16 C 1.37965 * 119.04892 * 180.02562 * 14 13 12 17 17 N 1.32025 * 120.82650 * 0.02562 * 16 14 13 18 18 C 1.31958 * 121.91753 * 359.97438 * 17 16 14 19 19 C 1.37956 * 120.86125 * 0.02562 * 18 17 16 20 20 N 1.48015 * 120.46043 * 180.02562 * 19 18 17 21 21 O 1.21798 * 119.99683 * 359.97438 * 20 19 18 22 22 O 1.21797 * 120.00014 * 179.97438 * 20 19 18 23 23 C 1.46849 * 111.19540 * 61.74183 * 12 11 10 24 24 C 1.53039 * 109.52084 * 298.25604 * 23 12 11 25 25 H 0.96996 * 119.99870 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.57066 * 59.84405 * 9 7 2 27 27 H 1.09004 * 109.50637 * 57.61916 * 10 9 7 28 28 H 1.09001 * 109.53487 * 297.52053 * 10 9 7 29 29 H 1.08999 * 109.46364 * 180.80174 * 11 10 9 30 30 H 1.09001 * 109.46271 * 60.83700 * 11 10 9 31 31 H 1.08003 * 119.59027 * 179.72773 * 16 14 13 32 32 H 1.07991 * 119.57280 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.46584 * 58.27708 * 23 12 11 34 34 H 1.08995 * 109.45998 * 178.24750 * 23 12 11 35 35 H 1.08998 * 109.51054 * 299.24121 * 24 23 12 36 36 H 1.09005 * 109.50158 * 179.11909 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4753 -4.9850 0.0610 12 7 0.6544 -5.0186 1.2782 13 6 0.0420 -6.2595 1.4329 14 6 -0.8337 -6.7517 0.4638 15 17 -1.1794 -5.8247 -0.9627 16 6 -1.4202 -7.9857 0.6556 17 7 -1.1622 -8.6964 1.7378 18 6 -0.3405 -8.2655 2.6761 19 6 0.2866 -7.0421 2.5603 20 7 1.2071 -6.5677 3.6178 21 8 1.4151 -7.2586 4.5990 22 8 1.7566 -5.4864 3.5067 23 6 -0.3393 -3.9375 1.2784 24 6 0.3764 -2.5850 1.2533 25 1 -0.4850 0.8400 0.0004 26 1 0.6214 -2.5572 -0.8884 27 1 2.8999 -3.5835 0.8672 28 1 2.8427 -3.6330 -0.9116 29 1 2.1806 -5.8160 0.0755 30 1 0.8310 -5.0711 -0.8140 31 1 -2.1025 -8.3730 -0.0866 32 1 -0.1563 -8.8784 3.5459 33 1 -0.9751 -4.0284 0.3977 34 1 -0.9519 -4.0075 2.1772 35 1 1.0018 -2.4876 2.1407 36 1 -0.3617 -1.7830 1.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596190835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:25 Heat of formation + Delta-G solvation = 47.694414 kcal Electronic energy + Delta-G solvation = -24256.007467 eV Core-core repulsion = 20577.117174 eV Total energy + Delta-G solvation = -3678.890293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20010 -40.83304 -38.65769 -37.04167 -36.27663 -34.65715 -32.58656 -31.96882 -30.37985 -29.95094 -26.85309 -25.93936 -23.90090 -22.98765 -22.37981 -21.80052 -19.34221 -19.12078 -18.50272 -17.60604 -17.37257 -16.98143 -16.37091 -15.78794 -15.21011 -15.00841 -14.53948 -14.48171 -13.90698 -13.25800 -12.96214 -12.79672 -12.51874 -12.18249 -11.70977 -11.60961 -11.40927 -11.18893 -11.02508 -10.86552 -10.84216 -10.61655 -10.50054 -10.40714 -10.28301 -10.06202 -9.56248 -9.50509 -9.10016 -8.84426 -8.33383 -8.22281 -6.01031 -4.05770 -0.42499 0.23061 1.23535 1.24492 1.62936 2.84324 3.32799 3.36775 3.37644 3.40691 3.65992 3.90111 4.20734 4.35546 4.43912 4.66593 5.05643 5.29739 5.38034 5.50169 5.56223 5.79766 5.91371 6.06883 6.34723 6.41590 6.44009 6.71372 6.84997 6.90838 6.95838 7.18552 7.33222 7.40566 7.72397 7.83609 7.97245 8.06294 8.43020 8.97157 9.59121 11.05539 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.004767 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.079729 B = 5872.087119 C = 6850.023691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.050 3.950 10 C -0.103 4.103 11 C 0.050 3.950 12 N -0.492 5.492 13 C 0.231 3.769 14 C -0.139 4.139 15 Cl -0.005 7.005 16 C 0.161 3.839 17 N -0.467 5.467 18 C 0.177 3.823 19 C -0.081 4.081 20 N 0.030 4.970 21 O -0.196 6.196 22 O -0.073 6.073 23 C 0.054 3.946 24 C -0.101 4.101 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -16.138 0.537 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.032 3.968 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.215 5.215 13 C 0.125 3.875 14 C -0.172 4.172 15 Cl 0.024 6.976 16 C 0.005 3.995 17 N -0.177 5.177 18 C 0.017 3.983 19 C -0.169 4.169 20 N 0.554 4.446 21 O -0.398 6.398 22 O -0.308 6.308 23 C -0.070 4.070 24 C -0.139 4.139 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.199 0.801 32 H 0.207 0.793 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.950 -16.970 0.441 17.683 hybrid contribution 0.448 1.703 -0.595 1.859 sum -4.502 -15.267 -0.155 15.918 Atomic orbital electron populations 1.69841 1.05887 1.26520 1.51030 1.24947 0.94830 0.99030 0.95059 0.86681 0.79630 0.83193 0.78643 1.20397 1.21421 1.20181 1.21127 0.92941 0.90433 1.50256 0.92613 1.18668 0.92575 0.91821 0.93737 1.21681 0.98765 0.92499 1.01122 1.22563 0.95563 1.00900 0.88480 1.59954 1.22951 0.97646 1.40926 1.19180 0.87412 0.92337 0.88568 1.23225 1.03059 0.96946 0.93921 1.98433 1.93068 1.71356 1.34728 1.23255 0.93958 0.88052 0.94242 1.68292 1.14919 1.32927 1.01531 1.22933 0.87521 0.90320 0.97477 1.22416 1.02945 0.98639 0.92874 1.43099 1.00127 1.00871 1.00548 1.94516 1.68576 1.55981 1.20714 1.94732 1.46432 1.06526 1.83089 1.22645 0.92507 0.91832 1.00041 1.21712 1.00488 0.91474 1.00236 0.93005 0.96019 0.91589 0.92472 0.92429 0.92845 0.80123 0.79319 0.93285 0.92643 0.92808 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 11.37 55.43 0.63 -23.97 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.99 16 10 C -0.10 -2.04 5.32 -26.65 -0.14 -2.19 16 11 C 0.05 0.84 5.03 -3.83 -0.02 0.82 16 12 N -0.49 -8.37 2.65 -170.92 -0.45 -8.82 16 13 C 0.23 3.34 4.68 -83.56 -0.39 2.95 16 14 C -0.14 -1.68 6.00 -39.18 -0.24 -1.92 16 15 Cl -0.01 -0.06 23.05 -51.86 -1.20 -1.26 16 16 C 0.16 1.56 10.97 -17.57 -0.19 1.37 16 17 N -0.47 -4.87 10.36 -13.32 -0.14 -5.01 16 18 C 0.18 1.93 10.71 -17.60 -0.19 1.74 16 19 C -0.08 -1.12 6.89 -79.62 -0.55 -1.67 16 20 N 0.03 0.48 4.45 34.12 0.15 0.63 16 21 O -0.20 -3.05 18.48 -29.46 -0.54 -3.59 16 22 O -0.07 -1.34 17.24 -29.46 -0.51 -1.85 16 23 C 0.05 0.99 5.09 -3.83 -0.02 0.97 16 24 C -0.10 -2.26 5.12 -26.65 -0.14 -2.40 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.05 0.87 4.95 -51.93 -0.26 0.61 16 31 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.19 1.61 7.61 -52.49 -0.40 1.21 16 33 H 0.05 0.88 5.39 -51.93 -0.28 0.60 16 34 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.10 2.48 6.17 -51.93 -0.32 2.16 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -28.13 311.32 -8.60 -36.73 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -3.75 Total: -1.93 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.46 Total: -11.52 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.19 Total: -37.17 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -1.05 Total: -5.44 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.20 Total: -1.26 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.13 -8.60 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596190835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.421 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds