Wall clock time and date at job start Tue Mar 31 2020 10:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27924 * 124.25915 * 2 1 4 4 C 1.34704 * 117.84686 * 180.19412 * 3 2 1 5 5 C 1.41074 * 129.57831 * 179.86027 * 4 3 2 6 6 C 1.37279 * 120.57234 * 179.69861 * 5 4 3 7 7 C 1.38537 * 120.78550 * 0.02562 * 6 5 4 8 8 C 1.38868 * 119.92222 * 359.97165 * 7 6 5 9 9 C 1.48211 * 120.07987 * 179.97438 * 8 7 6 10 10 C 1.39493 * 120.05576 * 129.72688 * 9 8 7 11 11 C 1.37823 * 119.94079 * 179.79128 * 10 9 8 12 12 C 1.39007 * 120.05837 * 0.46517 * 11 10 9 13 13 O 1.35697 * 119.94226 * 179.76495 * 12 11 10 14 14 C 1.34811 * 117.00212 * 174.47360 * 13 12 11 15 15 H 1.08003 * 119.99679 * 5.05259 * 14 13 12 16 16 C 1.38636 * 120.00569 * 185.05950 * 14 13 12 17 17 N 1.31568 * 119.99537 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00476 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47193 * 89.99600 * 18 16 14 20 20 H 1.48501 * 109.47324 * 209.99949 * 18 16 14 21 21 H 1.48505 * 109.47146 * 329.99982 * 18 16 14 22 22 C 1.39008 * 120.11442 * 359.79221 * 12 11 10 23 23 C 1.37822 * 120.05679 * 359.97136 * 22 12 11 24 24 C 1.39729 * 111.81436 * 359.57606 * 4 3 2 25 25 S 1.70656 * 124.25348 * 179.74629 * 2 1 3 26 26 H 1.09008 * 109.46854 * 270.25572 * 1 2 3 27 27 H 1.08999 * 109.46635 * 30.25288 * 1 2 3 28 28 H 1.08998 * 109.47356 * 150.26019 * 1 2 3 29 29 H 1.07997 * 119.71436 * 359.72003 * 5 4 3 30 30 H 1.08000 * 119.60645 * 179.97438 * 6 5 4 31 31 H 1.07991 * 120.03726 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03042 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.96753 * 180.25456 * 11 10 9 34 34 H 0.96994 * 119.99605 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.97012 * 179.97438 * 22 12 11 36 36 H 1.08002 * 120.02828 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2271 1.0573 0.0000 4 6 3.5657 0.9069 -0.0040 5 6 4.5804 1.8870 -0.0077 6 6 5.9037 1.5220 -0.0053 7 6 6.2709 0.1862 0.0001 8 6 5.2939 -0.8007 0.0038 9 6 5.6828 -2.2309 0.0091 10 6 5.1215 -3.1040 0.9409 11 6 5.4816 -4.4344 0.9409 12 6 6.4104 -4.9043 0.0196 13 8 6.7668 -6.2136 0.0248 14 6 7.5830 -6.6297 -0.9642 15 1 7.9883 -5.9159 -1.6660 16 6 7.9021 -7.9739 -1.0804 17 7 7.4086 -8.8434 -0.2252 18 14 9.0336 -8.5503 -2.4503 19 1 10.4412 -8.5122 -1.9786 20 1 8.6777 -9.9398 -2.8346 21 1 8.8816 -7.6569 -3.6268 22 6 6.9752 -4.0352 -0.9066 23 6 6.6149 -2.7049 -0.9140 24 6 3.9369 -0.4402 0.0020 25 16 2.4675 -1.4106 0.0062 26 1 -0.3633 0.0046 1.0277 27 1 -0.3632 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 4.3137 2.9335 -0.0120 30 1 6.6677 2.2854 -0.0086 31 1 7.3156 -0.0873 0.0015 32 1 4.4026 -2.7387 1.6594 33 1 5.0442 -5.1117 1.6595 34 1 7.6321 -9.7837 -0.3063 35 1 7.6969 -4.4027 -1.6211 36 1 7.0537 -2.0301 -1.6341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:04 Heat of formation + Delta-G solvation = 48.222058 kcal Electronic energy + Delta-G solvation = -21468.838143 eV Core-core repulsion = 18202.863700 eV Total energy + Delta-G solvation = -3265.974443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33910 -39.10285 -37.44881 -36.11748 -32.56431 -31.73526 -31.58889 -30.34468 -28.18600 -27.90034 -25.50653 -23.93901 -22.82606 -22.04434 -20.79142 -20.57570 -18.24724 -18.07650 -16.98479 -16.58179 -15.59405 -15.24540 -15.14376 -14.66991 -14.62431 -14.39310 -13.73304 -13.67797 -13.41932 -13.21624 -12.95151 -12.83238 -12.66932 -12.38578 -11.88709 -11.80126 -11.61116 -11.43003 -11.29692 -10.94703 -10.77181 -10.58398 -10.51154 -9.98462 -9.62140 -9.46051 -8.95271 -8.59573 -8.33861 -8.07512 -7.14858 -6.56720 -4.14372 0.43934 1.07568 1.30733 1.82040 2.06263 2.13734 2.50150 3.06731 3.07910 3.12747 3.72373 3.83237 3.87697 4.43498 4.63346 4.85183 4.97444 5.05179 5.10644 5.14832 5.18701 5.22493 5.34885 5.50229 5.55474 5.65040 5.69797 5.89022 6.06381 6.15444 6.18496 6.31010 6.45025 6.55633 6.69644 6.78263 6.95318 7.11867 7.22009 7.30760 7.61184 7.66039 7.88004 8.88389 9.56011 10.60531 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.003180 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.003773 B = 8801.722128 C = 9582.979247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.073 3.927 3 N -0.476 5.476 4 C 0.083 3.917 5 C -0.086 4.086 6 C -0.099 4.099 7 C -0.111 4.111 8 C 0.046 3.954 9 C -0.174 4.174 10 C -0.054 4.054 11 C -0.190 4.190 12 C 0.162 3.838 13 O -0.169 6.169 14 C -0.393 4.393 15 H 0.095 0.905 16 C 0.041 3.959 17 N -0.857 5.857 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.235 4.235 23 C -0.045 4.045 24 C -0.180 4.180 25 S 0.121 5.879 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 16.571 -0.278 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.211 4.211 3 N -0.190 5.190 4 C -0.037 4.037 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.133 4.133 8 C 0.042 3.958 9 C -0.175 4.175 10 C -0.072 4.072 11 C -0.209 4.209 12 C 0.107 3.893 13 O -0.072 6.072 14 C -0.469 4.469 15 H 0.112 0.888 16 C -0.164 4.164 17 N -0.491 5.491 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.254 4.254 23 C -0.063 4.063 24 C -0.298 4.298 25 S 0.377 5.623 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.188 15.541 -0.079 17.566 hybrid contribution 1.250 0.446 -0.701 1.500 sum -6.939 15.986 -0.780 17.445 Atomic orbital electron populations 1.20521 0.85169 1.04319 1.04066 1.26784 1.01817 0.92025 1.00444 1.66208 1.04147 1.31648 1.17046 1.19095 0.89033 0.91724 1.03829 1.20508 0.90551 0.97930 1.01768 1.20872 0.95321 0.96312 0.99442 1.21261 0.99238 0.91748 1.01073 1.18051 0.88690 0.93436 0.95628 1.18163 1.05690 0.90850 1.02826 1.20612 0.97664 0.92156 0.96807 1.20117 1.02407 0.95364 1.02996 1.19476 0.91597 0.85436 0.92827 1.83957 1.57827 1.19015 1.46354 1.21385 1.24917 0.93084 1.07530 0.88808 1.25334 0.98007 0.94616 0.98489 1.70040 1.41380 1.02995 1.34675 0.85684 0.79397 0.78557 0.79674 1.19747 1.20128 1.19064 1.21096 1.06604 0.93552 1.04158 1.20745 0.94570 0.94815 0.96213 1.23906 0.98280 0.96199 1.11441 1.84279 0.95192 1.09201 1.73623 0.89371 0.89311 0.89784 0.85322 0.84996 0.84762 0.87059 0.86105 0.91797 0.85148 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.44 36.01 0.38 -0.28 16 2 C 0.07 0.93 7.29 -13.91 -0.10 0.83 16 3 N -0.48 -6.97 10.57 -9.10 -0.10 -7.07 16 4 C 0.08 1.25 6.99 -84.97 -0.59 0.65 16 5 C -0.09 -1.09 10.09 -38.86 -0.39 -1.48 16 6 C -0.10 -1.12 9.97 -39.82 -0.40 -1.52 16 7 C -0.11 -1.47 9.50 -39.24 -0.37 -1.84 16 8 C 0.05 0.73 5.48 -104.75 -0.57 0.15 16 9 C -0.17 -3.06 5.39 -104.87 -0.57 -3.62 16 10 C -0.05 -0.98 8.78 -39.27 -0.34 -1.32 16 11 C -0.19 -3.92 9.98 -39.45 -0.39 -4.31 16 12 C 0.16 3.78 6.65 -39.01 -0.26 3.52 16 13 O -0.17 -4.68 9.75 0.27 0.00 -4.68 16 14 C -0.39 -10.63 9.48 30.88 0.29 -10.34 16 15 H 0.09 2.33 5.19 -52.48 -0.27 2.06 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -24.44 13.67 55.48 0.76 -23.68 16 18 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 22 C -0.23 -4.92 9.15 -39.45 -0.36 -5.28 16 23 C -0.05 -0.81 9.49 -39.27 -0.37 -1.19 16 24 C -0.18 -2.81 6.23 -38.21 -0.24 -3.05 16 25 S 0.12 1.68 21.75 -107.50 -2.34 -0.66 16 26 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.57 8.03 -52.49 -0.42 1.15 16 32 H 0.11 1.82 7.64 -52.48 -0.40 1.42 16 33 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.13 2.71 5.62 -52.49 -0.30 2.42 16 36 H 0.11 1.71 8.04 -52.49 -0.42 1.29 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -31.09 328.44 -9.62 -40.71 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.48 Total: 3.67 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -4.39 Total: -28.09 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.66 Total: -30.75 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.34 Total: -0.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.09 -9.62 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.934 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds