Wall clock time and date at job start Tue Mar 31 2020 10:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27924 * 124.25915 * 2 1 4 4 C 1.34704 * 117.84686 * 180.19412 * 3 2 1 5 5 C 1.41074 * 129.57831 * 179.86027 * 4 3 2 6 6 C 1.37279 * 120.57234 * 179.69861 * 5 4 3 7 7 C 1.38537 * 120.78550 * 0.02562 * 6 5 4 8 8 C 1.38868 * 119.92222 * 359.97165 * 7 6 5 9 9 C 1.48211 * 120.07987 * 179.97438 * 8 7 6 10 10 C 1.39493 * 120.05576 * 129.72688 * 9 8 7 11 11 C 1.37823 * 119.94079 * 179.79128 * 10 9 8 12 12 C 1.39007 * 120.05837 * 0.46517 * 11 10 9 13 13 O 1.35697 * 119.94226 * 179.76495 * 12 11 10 14 14 C 1.34811 * 117.00212 * 174.47360 * 13 12 11 15 15 H 1.08003 * 119.99679 * 5.05259 * 14 13 12 16 16 C 1.38636 * 120.00569 * 185.05950 * 14 13 12 17 17 N 1.31568 * 119.99537 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00476 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47193 * 89.99600 * 18 16 14 20 20 H 1.48501 * 109.47324 * 209.99949 * 18 16 14 21 21 H 1.48505 * 109.47146 * 329.99982 * 18 16 14 22 22 C 1.39008 * 120.11442 * 359.79221 * 12 11 10 23 23 C 1.37822 * 120.05679 * 359.97136 * 22 12 11 24 24 C 1.39729 * 111.81436 * 359.57606 * 4 3 2 25 25 S 1.70656 * 124.25348 * 179.74629 * 2 1 3 26 26 H 1.09008 * 109.46854 * 270.25572 * 1 2 3 27 27 H 1.08999 * 109.46635 * 30.25288 * 1 2 3 28 28 H 1.08998 * 109.47356 * 150.26019 * 1 2 3 29 29 H 1.07997 * 119.71436 * 359.72003 * 5 4 3 30 30 H 1.08000 * 119.60645 * 179.97438 * 6 5 4 31 31 H 1.07991 * 120.03726 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03042 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.96753 * 180.25456 * 11 10 9 34 34 H 0.96994 * 119.99605 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.97012 * 179.97438 * 22 12 11 36 36 H 1.08002 * 120.02828 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2271 1.0573 0.0000 4 6 3.5657 0.9069 -0.0040 5 6 4.5804 1.8870 -0.0077 6 6 5.9037 1.5220 -0.0053 7 6 6.2709 0.1862 0.0001 8 6 5.2939 -0.8007 0.0038 9 6 5.6828 -2.2309 0.0091 10 6 5.1215 -3.1040 0.9409 11 6 5.4816 -4.4344 0.9409 12 6 6.4104 -4.9043 0.0196 13 8 6.7668 -6.2136 0.0248 14 6 7.5830 -6.6297 -0.9642 15 1 7.9883 -5.9159 -1.6660 16 6 7.9021 -7.9739 -1.0804 17 7 7.4086 -8.8434 -0.2252 18 14 9.0336 -8.5503 -2.4503 19 1 10.4412 -8.5122 -1.9786 20 1 8.6777 -9.9398 -2.8346 21 1 8.8816 -7.6569 -3.6268 22 6 6.9752 -4.0352 -0.9066 23 6 6.6149 -2.7049 -0.9140 24 6 3.9369 -0.4402 0.0020 25 16 2.4675 -1.4106 0.0062 26 1 -0.3633 0.0046 1.0277 27 1 -0.3632 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 4.3137 2.9335 -0.0120 30 1 6.6677 2.2854 -0.0086 31 1 7.3156 -0.0873 0.0015 32 1 4.4026 -2.7387 1.6594 33 1 5.0442 -5.1117 1.6595 34 1 7.6321 -9.7837 -0.3063 35 1 7.6969 -4.4027 -1.6211 36 1 7.0537 -2.0301 -1.6341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:04 Heat of formation + Delta-G solvation = 31.008294 kcal Electronic energy + Delta-G solvation = -21469.584588 eV Core-core repulsion = 18202.863700 eV Total energy + Delta-G solvation = -3266.720888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43910 -40.73572 -38.82446 -37.47535 -34.39787 -32.99540 -32.57153 -31.90599 -29.42247 -29.05525 -27.37983 -25.01554 -24.12072 -23.57773 -22.08771 -21.69607 -19.92158 -19.42184 -18.70103 -17.58945 -16.72952 -16.55557 -16.32594 -16.20691 -16.02331 -15.66180 -15.56640 -15.19401 -14.60671 -14.31842 -14.30026 -13.97877 -13.65971 -13.57833 -13.36673 -13.11888 -12.93443 -12.71466 -12.66892 -12.38487 -12.25458 -12.13419 -11.76738 -11.27227 -11.07944 -10.82074 -10.66904 -9.91146 -9.61839 -9.37991 -8.65195 -8.49896 -6.17788 -0.57917 -0.06831 0.26102 0.50256 0.66715 0.80032 1.35301 1.35946 1.45555 1.53260 2.16195 2.63254 2.80700 2.93612 3.11070 3.40635 3.52515 3.92774 3.99112 4.04206 4.08017 4.15956 4.33576 4.42236 4.50043 4.63328 4.64537 4.65658 4.87375 4.91017 5.01134 5.07522 5.14862 5.22550 5.28094 5.38498 5.48098 5.61540 5.66229 5.78844 5.98376 6.05845 6.58155 6.94369 7.71905 8.72650 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.003180 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.003773 B = 8801.722128 C = 9582.979247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 N -0.495 5.495 4 C 0.062 3.938 5 C -0.083 4.083 6 C -0.088 4.088 7 C -0.102 4.102 8 C 0.013 3.987 9 C -0.144 4.144 10 C -0.051 4.051 11 C -0.197 4.197 12 C 0.126 3.874 13 O -0.224 6.224 14 C -0.416 4.416 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.917 5.917 18 Si 1.019 2.981 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.237 4.237 23 C -0.044 4.044 24 C -0.198 4.198 25 S 0.094 5.906 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.274 0.726 35 H 0.128 0.872 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 20.378 -1.305 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.199 4.199 3 N -0.210 5.210 4 C -0.058 4.058 5 C -0.104 4.104 6 C -0.108 4.108 7 C -0.123 4.123 8 C 0.008 3.992 9 C -0.145 4.145 10 C -0.069 4.069 11 C -0.216 4.216 12 C 0.075 3.925 13 O -0.130 6.130 14 C -0.491 4.491 15 H 0.123 0.877 16 C -0.218 4.218 17 N -0.555 5.555 18 Si 0.838 3.162 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.256 4.256 23 C -0.062 4.062 24 C -0.316 4.316 25 S 0.350 5.650 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.191 19.424 -1.101 21.109 hybrid contribution 1.019 -0.227 -0.290 1.084 sum -7.171 19.197 -1.391 20.540 Atomic orbital electron populations 1.20752 0.82140 1.05665 1.05612 1.27472 1.03340 0.90668 0.98418 1.66281 1.04226 1.32132 1.18405 1.19538 0.89774 0.92045 1.04401 1.20958 0.90637 0.98719 1.00051 1.21286 0.95761 0.96349 0.97394 1.21573 0.99529 0.92151 0.99068 1.18011 0.89556 0.92428 0.99161 1.18501 1.03189 0.92185 1.00658 1.20820 0.97711 0.91107 0.97301 1.20298 1.02108 0.96591 1.02622 1.19953 0.93097 0.84885 0.94589 1.83933 1.60059 1.21108 1.47894 1.21872 1.25319 0.93906 1.08038 0.87706 1.26603 0.99664 0.94394 1.01166 1.70184 1.44367 1.03386 1.37550 0.84586 0.77122 0.78090 0.76444 1.18709 1.19676 1.17528 1.21210 1.06386 0.94542 1.03471 1.21059 0.94474 0.93924 0.96707 1.24029 0.98415 0.96920 1.12255 1.84332 0.95724 1.10611 1.74318 0.87558 0.88198 0.88118 0.83079 0.80866 0.83027 0.85161 0.86347 0.91712 0.85403 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.44 71.24 0.74 -0.38 16 2 C 0.09 1.99 7.29 88.68 0.65 2.64 16 3 N -0.50 -13.43 10.57 -182.55 -1.93 -15.36 16 4 C 0.06 1.70 6.99 39.76 0.28 1.98 16 5 C -0.08 -1.77 10.09 22.74 0.23 -1.54 16 6 C -0.09 -1.56 9.97 22.12 0.22 -1.34 16 7 C -0.10 -2.28 9.50 22.49 0.21 -2.07 16 8 C 0.01 0.38 5.48 -19.95 -0.11 0.27 16 9 C -0.14 -4.84 5.39 -20.02 -0.11 -4.95 16 10 C -0.05 -1.83 8.78 22.47 0.20 -1.64 16 11 C -0.20 -8.44 9.98 22.36 0.22 -8.22 16 12 C 0.13 6.17 6.65 22.64 0.15 6.32 16 13 O -0.22 -13.23 9.75 -21.96 -0.21 -13.45 16 14 C -0.42 -23.62 9.48 67.92 0.64 -22.98 16 15 H 0.11 5.41 5.19 -2.91 -0.02 5.40 16 16 C -0.02 -1.12 5.49 84.83 0.47 -0.65 16 17 N -0.92 -55.39 13.67 21.61 0.30 -55.10 16 18 Si 1.02 41.81 29.55 68.60 2.03 43.83 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 C -0.24 -10.04 9.15 22.36 0.20 -9.84 16 23 C -0.04 -1.51 9.49 22.47 0.21 -1.29 16 24 C -0.20 -5.80 6.23 23.16 0.14 -5.66 16 25 S 0.09 2.51 21.75 -56.49 -1.23 1.28 16 26 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.15 2.84 8.03 -2.92 -0.02 2.82 16 32 H 0.13 4.16 7.64 -2.91 -0.02 4.14 16 33 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.13 5.41 5.62 -2.91 -0.02 5.39 16 36 H 0.14 4.00 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -72.51 328.44 4.43 -68.08 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.12 Total: 20.06 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 4.36 Total: -49.35 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.63 Total: -70.46 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.21 Total: -13.45 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.23 Total: 1.28 kcal Total: -72.51 4.43 -68.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.089 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds