Wall clock time and date at job start Tue Mar 31 2020 11:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86810 * 119.99699 * 2 1 4 4 H 1.48493 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46922 * 300.00170 * 3 2 1 6 6 H 1.48503 * 109.46892 * 60.00120 * 3 2 1 7 7 C 1.38946 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99778 * 199.09960 * 7 2 1 9 9 N 1.37097 * 120.00219 * 19.10548 * 7 2 1 10 10 C 1.34777 * 119.99768 * 42.78583 * 9 7 2 11 11 O 1.21291 * 120.00062 * 0.27471 * 10 9 7 12 12 C 1.50700 * 120.00151 * 180.27805 * 10 9 7 13 13 S 1.81390 * 109.47338 * 180.02562 * 12 10 9 14 14 C 1.81403 * 103.00135 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47476 * 179.97438 * 14 13 12 16 16 F 1.39904 * 109.47004 * 59.99807 * 15 14 13 17 17 F 1.39901 * 109.47402 * 179.97438 * 15 14 13 18 18 F 1.39898 * 109.46891 * 300.00074 * 15 14 13 19 19 C 1.46493 * 120.00115 * 223.06332 * 9 7 2 20 20 C 1.54269 * 110.03356 * 59.60132 * 19 9 7 21 21 C 1.54963 * 104.16154 * 217.13719 * 20 19 9 22 22 C 1.54881 * 102.77843 * 37.88755 * 21 20 19 23 23 C 1.53877 * 110.03408 * 302.38574 * 19 9 7 24 24 H 0.96997 * 119.99783 * 354.75772 * 1 2 3 25 25 H 1.09009 * 109.46949 * 300.00511 * 12 10 9 26 26 H 1.09004 * 109.47059 * 59.99674 * 12 10 9 27 27 H 1.09004 * 109.46967 * 299.99768 * 14 13 12 28 28 H 1.09006 * 109.47272 * 59.99719 * 14 13 12 29 29 H 1.08998 * 110.02036 * 180.99125 * 19 9 7 30 30 H 1.09001 * 110.48477 * 335.78721 * 20 19 9 31 31 H 1.09001 * 110.48749 * 98.42789 * 20 19 9 32 32 H 1.09000 * 110.72121 * 279.57008 * 21 20 19 33 33 H 1.09001 * 110.92073 * 156.29742 * 21 20 19 34 34 H 1.08997 * 110.49295 * 203.40363 * 22 21 20 35 35 H 1.09007 * 110.60040 * 80.81525 * 22 21 20 36 36 H 1.08997 * 110.03184 * 238.57033 * 23 19 9 37 37 H 1.08999 * 110.02917 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0444 -1.2291 0.3055 9 7 1.3802 -2.3578 -0.3897 10 6 0.5744 -2.3550 -1.4700 11 8 0.4095 -1.3323 -2.1010 12 6 -0.1217 -3.6225 -1.8942 13 16 -1.1249 -3.2967 -3.3698 14 6 -1.8716 -4.9123 -3.7206 15 6 -2.7637 -4.8039 -4.9588 16 9 -1.9938 -4.3983 -6.0542 17 9 -3.3391 -6.0500 -5.2296 18 9 -3.7736 -3.8643 -4.7251 19 6 1.5793 -3.5929 0.3724 20 6 1.1194 -3.3937 1.8314 21 6 2.1447 -4.2023 2.6659 22 6 3.4755 -3.9444 1.9167 23 6 3.0767 -3.9433 0.4265 24 1 -0.4850 0.8365 0.0768 25 1 0.6217 -4.3865 -2.1219 26 1 -0.7653 -3.9713 -1.0865 27 1 -1.0847 -5.6445 -3.9022 28 1 -2.4718 -5.2281 -2.8672 29 1 1.0213 -4.4088 -0.0869 30 1 1.1550 -2.3384 2.1019 31 1 0.1140 -3.7908 1.9720 32 1 1.8965 -5.2636 2.6586 33 1 2.1975 -3.8266 3.6877 34 1 4.1888 -4.7431 2.1201 35 1 3.8944 -2.9788 2.2002 36 1 3.2452 -4.9296 -0.0059 37 1 3.6551 -3.1946 -0.1147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090602052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:43 Heat of formation + Delta-G solvation = -179.504860 kcal Electronic energy + Delta-G solvation = -24141.649477 eV Core-core repulsion = 20016.634395 eV Total energy + Delta-G solvation = -4125.015083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.11634 -47.65697 -47.54449 -38.93014 -36.75760 -33.39065 -31.81815 -31.40841 -29.18808 -28.13183 -26.93085 -24.45272 -23.62090 -20.20018 -20.09934 -19.38739 -18.67502 -18.56413 -17.68485 -16.46180 -16.01955 -15.64492 -15.01244 -14.87185 -14.68583 -14.51108 -14.22874 -14.21553 -14.01564 -13.75024 -13.74127 -13.53465 -13.38817 -12.82868 -12.75849 -12.45749 -12.11739 -11.88205 -11.35253 -11.07268 -10.92853 -10.79420 -10.69135 -10.55278 -10.50261 -10.24605 -10.09801 -10.00985 -9.66926 -8.79753 -8.20655 -7.42424 -7.14396 -6.14374 -3.87989 1.40518 2.51174 2.79891 3.28739 3.39102 3.42039 3.70608 3.94562 4.04695 4.23778 4.29871 4.80712 4.86964 5.08084 5.09558 5.16087 5.23495 5.37725 5.55583 5.65122 5.79210 5.83762 5.99271 6.08743 6.15528 6.20723 6.36338 6.38605 6.53678 6.73455 6.87023 7.12552 7.61669 8.22467 8.99117 9.08856 9.60395 10.19084 10.94507 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.004296 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.928642 B = 6515.913851 C = 7821.298020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.343 4.343 8 H 0.081 0.919 9 N -0.440 5.440 10 C 0.487 3.513 11 O -0.514 6.514 12 C -0.116 4.116 13 S -0.125 6.125 14 C -0.190 4.190 15 C 0.478 3.522 16 F -0.173 7.173 17 F -0.183 7.183 18 F -0.172 7.172 19 C 0.128 3.872 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.264 0.736 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -13.055 -1.209 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.469 4.469 8 H 0.099 0.901 9 N -0.163 5.163 10 C 0.272 3.728 11 O -0.391 6.391 12 C -0.268 4.268 13 S 0.100 5.900 14 C -0.339 4.339 15 C 0.423 3.577 16 F -0.154 7.154 17 F -0.164 7.164 18 F -0.153 7.153 19 C 0.023 3.977 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.641 -11.457 -2.208 11.783 hybrid contribution 0.291 -0.574 0.724 0.969 sum -1.350 -12.031 -1.483 12.197 Atomic orbital electron populations 1.69825 1.06528 1.27463 1.42241 1.25223 0.94775 0.99367 0.94437 0.86204 0.79848 0.82829 0.77500 1.19599 1.20657 1.21279 1.18856 0.95086 0.83807 1.49200 0.90123 1.43252 1.43680 1.07665 1.21670 1.18914 0.84107 0.87250 0.82541 1.90586 1.62214 1.32551 1.53737 1.23789 1.01118 1.04038 0.97827 1.87962 1.59091 1.05870 1.37065 1.24766 1.03473 1.06972 0.98739 1.19604 0.79607 0.73692 0.84841 1.93230 1.74898 1.90477 1.56842 1.93191 1.85837 1.42698 1.94703 1.93237 1.62120 1.65535 1.94429 1.21742 0.94757 0.88422 0.92775 1.22662 0.96849 1.02441 0.94392 1.22449 0.95865 0.99152 0.98591 1.22256 0.96800 1.01025 0.95405 1.22454 0.97292 1.00572 0.96627 0.92551 0.88880 0.88734 0.86180 0.86116 0.91873 0.88918 0.93013 0.92554 0.92250 0.92861 0.91495 0.92910 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.72 11.67 55.50 0.65 -23.08 16 2 C 0.07 1.98 4.35 -17.47 -0.08 1.90 16 3 Si 0.91 21.48 29.60 -169.99 -5.03 16.44 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.34 -8.79 7.45 -14.93 -0.11 -8.90 16 8 H 0.08 2.02 7.08 -52.48 -0.37 1.65 16 9 N -0.44 -10.18 2.46 -106.55 -0.26 -10.45 16 10 C 0.49 11.73 6.98 -10.99 -0.08 11.65 16 11 O -0.51 -14.75 13.53 5.55 0.08 -14.68 16 12 C -0.12 -2.08 4.74 36.01 0.17 -1.91 16 13 S -0.12 -2.23 20.35 -107.50 -2.19 -4.41 16 14 C -0.19 -2.29 5.96 37.16 0.22 -2.07 16 15 C 0.48 6.16 3.14 37.16 0.12 6.28 16 16 F -0.17 -2.45 17.01 2.25 0.04 -2.41 16 17 F -0.18 -2.15 17.32 2.25 0.04 -2.11 16 18 F -0.17 -2.50 17.01 2.25 0.04 -2.46 16 19 C 0.13 2.32 3.20 -66.81 -0.21 2.10 16 20 C -0.13 -2.18 6.42 -25.03 -0.16 -2.34 16 21 C -0.12 -1.71 6.91 -24.70 -0.17 -1.88 16 22 C -0.12 -1.67 6.83 -25.08 -0.17 -1.84 16 23 C -0.13 -2.09 6.19 -25.61 -0.16 -2.25 16 24 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 25 H 0.09 1.40 7.77 -51.92 -0.40 0.99 16 26 H 0.09 1.54 7.82 -51.92 -0.41 1.14 16 27 H 0.12 1.16 8.14 -51.92 -0.42 0.73 16 28 H 0.12 1.22 8.14 -51.92 -0.42 0.79 16 29 H 0.06 1.00 5.82 -51.93 -0.30 0.70 16 30 H 0.09 1.95 7.10 -51.93 -0.37 1.58 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.40 6.85 -51.93 -0.36 1.04 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -31.12 328.36 -7.05 -38.17 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.73 Total: -0.71 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.63 Total: 0.75 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.39 Total: -33.52 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.12 Total: -6.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.19 Total: -4.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.12 -7.05 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090602052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.337 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds