Wall clock time and date at job start Tue Mar 31 2020 11:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86810 * 119.99699 * 2 1 4 4 H 1.48493 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46922 * 300.00170 * 3 2 1 6 6 H 1.48503 * 109.46892 * 60.00120 * 3 2 1 7 7 C 1.38946 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99778 * 199.09960 * 7 2 1 9 9 N 1.37097 * 120.00219 * 19.10548 * 7 2 1 10 10 C 1.34777 * 119.99768 * 42.78583 * 9 7 2 11 11 O 1.21291 * 120.00062 * 0.27471 * 10 9 7 12 12 C 1.50700 * 120.00151 * 180.27805 * 10 9 7 13 13 S 1.81390 * 109.47338 * 180.02562 * 12 10 9 14 14 C 1.81403 * 103.00135 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47476 * 179.97438 * 14 13 12 16 16 F 1.39904 * 109.47004 * 59.99807 * 15 14 13 17 17 F 1.39901 * 109.47402 * 179.97438 * 15 14 13 18 18 F 1.39898 * 109.46891 * 300.00074 * 15 14 13 19 19 C 1.46493 * 120.00115 * 223.06332 * 9 7 2 20 20 C 1.54269 * 110.03356 * 59.60132 * 19 9 7 21 21 C 1.54963 * 104.16154 * 217.13719 * 20 19 9 22 22 C 1.54881 * 102.77843 * 37.88755 * 21 20 19 23 23 C 1.53877 * 110.03408 * 302.38574 * 19 9 7 24 24 H 0.96997 * 119.99783 * 354.75772 * 1 2 3 25 25 H 1.09009 * 109.46949 * 300.00511 * 12 10 9 26 26 H 1.09004 * 109.47059 * 59.99674 * 12 10 9 27 27 H 1.09004 * 109.46967 * 299.99768 * 14 13 12 28 28 H 1.09006 * 109.47272 * 59.99719 * 14 13 12 29 29 H 1.08998 * 110.02036 * 180.99125 * 19 9 7 30 30 H 1.09001 * 110.48477 * 335.78721 * 20 19 9 31 31 H 1.09001 * 110.48749 * 98.42789 * 20 19 9 32 32 H 1.09000 * 110.72121 * 279.57008 * 21 20 19 33 33 H 1.09001 * 110.92073 * 156.29742 * 21 20 19 34 34 H 1.08997 * 110.49295 * 203.40363 * 22 21 20 35 35 H 1.09007 * 110.60040 * 80.81525 * 22 21 20 36 36 H 1.08997 * 110.03184 * 238.57033 * 23 19 9 37 37 H 1.08999 * 110.02917 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0444 -1.2291 0.3055 9 7 1.3802 -2.3578 -0.3897 10 6 0.5744 -2.3550 -1.4700 11 8 0.4095 -1.3323 -2.1010 12 6 -0.1217 -3.6225 -1.8942 13 16 -1.1249 -3.2967 -3.3698 14 6 -1.8716 -4.9123 -3.7206 15 6 -2.7637 -4.8039 -4.9588 16 9 -1.9938 -4.3983 -6.0542 17 9 -3.3391 -6.0500 -5.2296 18 9 -3.7736 -3.8643 -4.7251 19 6 1.5793 -3.5929 0.3724 20 6 1.1194 -3.3937 1.8314 21 6 2.1447 -4.2023 2.6659 22 6 3.4755 -3.9444 1.9167 23 6 3.0767 -3.9433 0.4265 24 1 -0.4850 0.8365 0.0768 25 1 0.6217 -4.3865 -2.1219 26 1 -0.7653 -3.9713 -1.0865 27 1 -1.0847 -5.6445 -3.9022 28 1 -2.4718 -5.2281 -2.8672 29 1 1.0213 -4.4088 -0.0869 30 1 1.1550 -2.3384 2.1019 31 1 0.1140 -3.7908 1.9720 32 1 1.8965 -5.2636 2.6586 33 1 2.1975 -3.8266 3.6877 34 1 4.1888 -4.7431 2.1201 35 1 3.8944 -2.9788 2.2002 36 1 3.2452 -4.9296 -0.0059 37 1 3.6551 -3.1946 -0.1147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090602052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:42 Heat of formation + Delta-G solvation = -197.235586 kcal Electronic energy + Delta-G solvation = -24142.418339 eV Core-core repulsion = 20016.634395 eV Total energy + Delta-G solvation = -4125.783945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.14991 -48.66106 -48.62641 -40.57391 -38.30173 -35.19044 -33.64254 -32.42987 -30.78550 -29.39734 -28.37036 -26.28046 -24.69006 -21.77325 -21.35993 -20.97924 -19.71072 -19.60384 -18.92551 -18.08556 -17.61981 -17.07208 -16.69600 -16.19071 -15.97038 -15.83038 -15.56660 -15.48909 -15.12882 -15.05899 -14.80833 -14.80008 -14.47623 -14.14808 -14.09992 -14.01011 -13.62627 -13.21531 -12.93699 -12.87937 -12.56171 -12.46521 -12.23472 -12.05671 -11.80823 -11.74920 -11.40803 -11.31633 -10.97040 -10.74707 -10.08196 -9.05660 -8.76063 -8.17542 -5.90656 0.17777 1.32214 1.35882 1.44737 1.50819 1.71548 2.24454 2.45467 2.69755 2.97320 3.10089 3.26059 3.27462 3.88422 3.92713 3.98209 3.99912 4.21270 4.23411 4.28982 4.37693 4.59420 4.73381 4.85295 4.87413 4.97941 5.16033 5.21674 5.33214 5.46560 5.57742 5.61545 5.71950 6.25606 7.06251 7.22037 7.72679 8.35293 8.91370 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.004296 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.928642 B = 6515.913851 C = 7821.298020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.024 3.976 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.452 5.452 10 C 0.469 3.531 11 O -0.573 6.573 12 C -0.093 4.093 13 S -0.205 6.205 14 C -0.164 4.164 15 C 0.478 3.522 16 F -0.183 7.183 17 F -0.172 7.172 18 F -0.185 7.185 19 C 0.119 3.881 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.127 4.127 24 H 0.256 0.744 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -16.545 -0.460 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.228 1.228 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.173 5.173 10 C 0.256 3.744 11 O -0.454 6.454 12 C -0.245 4.245 13 S 0.020 5.980 14 C -0.313 4.313 15 C 0.422 3.578 16 F -0.165 7.165 17 F -0.154 7.154 18 F -0.167 7.167 19 C 0.015 3.985 20 C -0.164 4.164 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.148 0.852 26 H 0.133 0.867 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.887 -14.978 -1.416 15.071 hybrid contribution 0.065 0.391 0.440 0.592 sum -0.822 -14.587 -0.976 14.643 Atomic orbital electron populations 1.69929 1.07793 1.27230 1.45109 1.25913 0.95333 1.02189 0.94817 0.85429 0.79574 0.79794 0.76758 1.18112 1.22790 1.20204 1.19014 0.95135 0.85068 1.47541 0.90202 1.43515 1.43071 1.08599 1.22154 1.19872 0.83792 0.88692 0.82062 1.90551 1.64002 1.35266 1.55535 1.23495 1.01714 1.01216 0.98047 1.88251 1.60355 1.11744 1.37633 1.24751 1.04118 1.03305 0.99076 1.19737 0.79422 0.73663 0.84937 1.93215 1.75113 1.90648 1.57499 1.93214 1.85661 1.41853 1.94639 1.93218 1.62757 1.66211 1.94481 1.22106 0.96885 0.86915 0.92584 1.22593 0.98628 1.00318 0.94902 1.22413 0.94041 1.00240 0.98104 1.22255 0.97656 1.01206 0.94140 1.22428 0.95046 1.01343 0.97749 0.93471 0.85193 0.86707 0.82809 0.83375 0.88818 0.93555 0.92275 0.89447 0.91597 0.89706 0.93522 0.89551 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.83 11.67 21.66 0.25 -51.57 16 2 C 0.02 1.34 4.35 84.93 0.37 1.71 16 3 Si 0.96 45.65 29.60 68.60 2.03 47.68 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.34 -17.84 7.45 84.04 0.63 -17.22 16 8 H 0.08 4.09 7.08 -2.91 -0.02 4.07 16 9 N -0.45 -20.88 2.46 -609.39 -1.50 -22.38 16 10 C 0.47 22.65 6.98 87.66 0.61 23.26 16 11 O -0.57 -34.01 13.53 -3.06 -0.04 -34.06 16 12 C -0.09 -3.16 4.74 71.24 0.34 -2.82 16 13 S -0.20 -7.11 20.35 -56.49 -1.15 -8.26 16 14 C -0.16 -3.38 5.96 71.98 0.43 -2.95 16 15 C 0.48 11.28 3.14 71.98 0.23 11.51 16 16 F -0.18 -4.96 17.01 44.97 0.77 -4.20 16 17 F -0.17 -3.57 17.32 44.97 0.78 -2.79 16 18 F -0.19 -5.20 17.01 44.97 0.77 -4.44 16 19 C 0.12 4.04 3.20 45.72 0.15 4.18 16 20 C -0.13 -4.19 6.42 31.70 0.20 -3.99 16 21 C -0.11 -2.69 6.91 31.91 0.22 -2.47 16 22 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 23 C -0.13 -3.70 6.19 31.32 0.19 -3.51 16 24 H 0.26 15.02 8.32 -92.71 -0.77 14.25 16 25 H 0.13 3.37 7.77 -2.39 -0.02 3.35 16 26 H 0.11 3.39 7.82 -2.39 -0.02 3.37 16 27 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.58 5.82 -2.39 -0.01 2.56 16 30 H 0.05 1.98 7.10 -2.39 -0.02 1.96 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.68 6.85 -2.39 -0.02 1.66 16 Total: -1.00 -73.10 328.36 6.57 -66.53 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.09 Total: 8.49 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 3.58 Total: 5.00 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.25 Total: -73.95 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.04 Total: -34.06 kcal Atomic # 9 Polarization: -13.73 SS G_CDS: 2.31 Total: -11.42 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: -7.11 SS G_CDS: -1.15 Total: -8.26 kcal Total: -73.10 6.57 -66.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090602052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.710 kcal (2) G-P(sol) polarization free energy of solvation -73.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds