Wall clock time and date at job start Tue Mar 31 2020 10:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47460 * 269.99921 * 3 2 1 5 5 H 1.48503 * 109.47231 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.47371 * 149.99975 * 3 2 1 7 7 C 1.39031 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00442 * 200.35374 * 7 2 1 9 9 N 1.36892 * 119.99984 * 20.35515 * 7 2 1 10 10 C 1.34775 * 119.99834 * 47.16828 * 9 7 2 11 11 O 1.21599 * 120.00293 * 6.28355 * 10 9 7 12 12 C 1.47614 * 119.99727 * 186.29090 * 10 9 7 13 13 C 1.39726 * 120.12309 * 61.26665 * 12 10 9 14 14 C 1.37816 * 119.90049 * 179.72024 * 13 12 10 15 15 C 1.38660 * 120.13750 * 0.53443 * 14 13 12 16 16 F 1.35102 * 119.88183 * 179.74261 * 15 14 13 17 17 C 1.38751 * 120.23843 * 359.76127 * 15 14 13 18 18 Cl 1.73606 * 119.94929 * 179.97438 * 17 15 14 19 19 C 1.37944 * 120.10265 * 359.96303 * 17 15 14 20 20 C 1.46500 * 119.99947 * 227.16215 * 9 7 2 21 21 C 1.54961 * 110.92630 * 312.66424 * 20 9 7 22 22 C 1.54269 * 104.16067 * 156.29441 * 21 20 9 23 23 C 1.53878 * 106.63950 * 336.44428 * 22 21 20 24 24 C 1.54270 * 106.59672 * 359.97438 * 23 22 21 25 25 H 0.97001 * 119.99855 * 4.96041 * 1 2 3 26 26 H 1.08005 * 120.05141 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.93692 * 180.25843 * 14 13 12 28 28 H 1.08005 * 120.06966 * 180.02562 * 19 17 15 29 29 H 1.09000 * 110.66987 * 189.35384 * 20 9 7 30 30 H 1.09002 * 110.47762 * 37.64155 * 21 20 9 31 31 H 1.08999 * 110.52984 * 274.97782 * 21 20 9 32 32 H 1.09005 * 110.03178 * 217.13748 * 22 21 20 33 33 H 1.08996 * 110.02995 * 95.75561 * 22 21 20 34 34 H 1.08997 * 110.03251 * 119.25945 * 23 22 21 35 35 H 1.08996 * 110.02952 * 240.64418 * 23 22 21 36 36 H 1.08997 * 110.48292 * 142.28893 * 24 23 22 37 37 H 1.09000 * 110.48166 * 264.79335 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0465 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5453 1.4403 0.7001 7 6 2.0089 -1.2040 -0.0005 8 1 3.0384 -1.2334 0.3247 9 7 1.3886 -2.3524 -0.4134 10 6 0.6754 -2.3592 -1.5569 11 8 0.6760 -1.3814 -2.2798 12 6 -0.1067 -3.5537 -1.9318 13 6 -1.1395 -4.0035 -1.1051 14 6 -1.8705 -5.1158 -1.4624 15 6 -1.5759 -5.7955 -2.6345 16 9 -2.2924 -6.8884 -2.9772 17 6 -0.5476 -5.3575 -3.4567 18 17 -0.1847 -6.2145 -4.9222 19 6 0.1868 -4.2419 -3.1115 20 6 1.5002 -3.5739 0.3877 21 6 2.9716 -3.8336 0.7987 22 6 2.8610 -4.7105 2.0632 23 6 1.4734 -4.4365 2.6693 24 6 0.7885 -3.4019 1.7526 25 1 -0.4850 0.8369 -0.0726 26 1 -1.3672 -3.4779 -0.1895 27 1 -2.6716 -5.4616 -0.8259 28 1 0.9868 -3.9012 -3.7520 29 1 1.0947 -4.4280 -0.1546 30 1 3.4748 -2.8945 1.0286 31 1 3.5004 -4.3676 0.0092 32 1 3.6399 -4.4384 2.7755 33 1 2.9507 -5.7634 1.7963 34 1 0.8893 -5.3564 2.6959 35 1 1.5790 -4.0324 3.6761 36 1 -0.2751 -3.6208 1.6584 37 1 0.9368 -2.3933 2.1382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160584407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:02 Heat of formation + Delta-G solvation = -62.018416 kcal Electronic energy + Delta-G solvation = -24013.876283 eV Core-core repulsion = 20310.308523 eV Total energy + Delta-G solvation = -3703.567759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.86531 -39.64353 -38.05108 -36.76658 -36.31624 -33.58241 -31.79889 -30.88576 -30.17694 -28.13892 -26.92581 -25.27723 -22.96711 -22.86259 -20.27703 -19.85659 -19.57337 -17.76982 -17.15723 -16.39410 -16.22523 -15.66769 -15.20317 -15.03949 -14.71261 -14.16290 -13.87556 -13.80864 -13.46190 -13.13077 -12.90118 -12.81734 -12.59309 -12.31101 -11.75588 -11.36599 -11.32094 -11.25600 -10.92531 -10.91392 -10.88986 -10.76292 -10.55670 -10.52443 -10.25150 -9.91616 -9.83837 -8.90903 -8.77918 -8.58301 -8.24891 -7.28513 -6.27042 -4.01495 1.03009 1.21684 2.05619 3.25902 3.33891 3.37959 3.47542 4.07365 4.16644 4.22254 4.65563 4.78490 5.03985 5.15992 5.19653 5.26007 5.32082 5.39763 5.54348 5.76306 5.83495 5.99334 6.00414 6.03649 6.07850 6.14252 6.20903 6.22222 6.36110 6.39444 6.52075 6.59370 6.78994 6.82534 6.85880 7.09935 7.54560 8.15770 8.90615 8.99426 9.47294 10.07444 10.80587 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.005253 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.139852 B = 5329.431697 C = 6308.724568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.431 5.431 10 C 0.519 3.481 11 O -0.536 6.536 12 C -0.082 4.082 13 C -0.060 4.060 14 C -0.145 4.145 15 C 0.100 3.900 16 F -0.133 7.133 17 C -0.074 4.074 18 Cl -0.060 7.060 19 C -0.057 4.057 20 C 0.126 3.874 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.267 0.733 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 -11.641 0.909 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.100 0.900 9 N -0.151 5.151 10 C 0.306 3.694 11 O -0.415 6.415 12 C -0.086 4.086 13 C -0.078 4.078 14 C -0.164 4.164 15 C 0.080 3.920 16 F -0.111 7.111 17 C -0.102 4.102 18 Cl -0.031 7.031 19 C -0.077 4.077 20 C 0.021 3.979 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.163 4.163 25 H 0.077 0.923 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.817 -11.118 0.477 11.158 hybrid contribution 0.072 0.477 -0.194 0.520 sum -0.746 -10.641 0.283 10.671 Atomic orbital electron populations 1.69830 1.06603 1.28239 1.42333 1.25267 0.94762 0.99638 0.93720 0.86298 0.79553 0.82329 0.78503 1.20158 1.21316 1.19668 1.18885 0.95566 0.84689 1.47335 0.89965 1.43114 1.46670 1.08602 1.16667 1.17739 0.83480 0.85938 0.82236 1.90656 1.64370 1.34870 1.51638 1.20619 0.97335 0.96683 0.94006 1.21420 0.93066 0.93931 0.99415 1.21038 1.02366 0.97125 0.95838 1.17479 0.92599 0.86613 0.95337 1.91502 1.76395 1.51114 1.92112 1.20792 0.99878 0.98226 0.91295 1.98361 1.94170 1.76379 1.34180 1.20982 0.98732 0.91813 0.96151 1.22146 0.94896 0.88767 0.92100 1.22618 0.97575 1.00337 0.96285 1.22053 0.97198 0.99108 0.97438 1.22084 0.96057 0.98866 0.99045 1.22623 0.98118 1.00287 0.95230 0.92288 0.83639 0.83837 0.83774 0.91091 0.89876 0.92591 0.92363 0.92648 0.92706 0.92400 0.92784 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.01 12.38 55.50 0.69 -22.33 16 2 C 0.08 2.02 4.36 -17.45 -0.08 1.95 16 3 Si 0.91 20.90 29.60 -169.99 -5.03 15.87 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.34 -8.55 7.71 -15.00 -0.12 -8.66 16 8 H 0.08 2.02 6.43 -52.49 -0.34 1.68 16 9 N -0.43 -9.90 2.53 -106.72 -0.27 -10.17 16 10 C 0.52 12.46 6.27 -12.44 -0.08 12.38 16 11 O -0.54 -15.25 15.59 5.28 0.08 -15.16 16 12 C -0.08 -1.59 4.26 -104.97 -0.45 -2.03 16 13 C -0.06 -0.99 8.33 -39.18 -0.33 -1.32 16 14 C -0.14 -2.04 10.01 -39.58 -0.40 -2.44 16 15 C 0.10 1.49 7.28 -39.24 -0.29 1.20 16 16 F -0.13 -1.92 16.83 2.25 0.04 -1.88 16 17 C -0.07 -1.16 6.32 -39.50 -0.25 -1.41 16 18 Cl -0.06 -0.84 28.60 -51.86 -1.48 -2.32 16 19 C -0.06 -0.99 9.56 -39.15 -0.37 -1.36 16 20 C 0.13 2.32 2.66 -65.90 -0.18 2.14 16 21 C -0.13 -2.14 6.30 -25.03 -0.16 -2.30 16 22 C -0.12 -1.63 6.80 -25.61 -0.17 -1.80 16 23 C -0.12 -1.69 6.80 -25.61 -0.17 -1.87 16 24 C -0.12 -2.14 6.42 -25.07 -0.16 -2.30 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.15 2.48 7.12 -52.48 -0.37 2.10 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 29 H 0.07 1.23 5.86 -51.93 -0.30 0.93 16 30 H 0.08 1.51 6.14 -51.93 -0.32 1.19 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.89 7.20 -51.93 -0.37 0.52 16 37 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -29.03 325.35 -8.46 -37.49 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.19 Total: 1.42 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.19 Total: -7.82 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.42 Total: -32.49 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.03 -8.46 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.532 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds