Wall clock time and date at job start Tue Mar 31 2020 10:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47460 * 269.99921 * 3 2 1 5 5 H 1.48503 * 109.47231 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.47371 * 149.99975 * 3 2 1 7 7 C 1.39031 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00442 * 200.35374 * 7 2 1 9 9 N 1.36892 * 119.99984 * 20.35515 * 7 2 1 10 10 C 1.34775 * 119.99834 * 47.16828 * 9 7 2 11 11 O 1.21599 * 120.00293 * 6.28355 * 10 9 7 12 12 C 1.47614 * 119.99727 * 186.29090 * 10 9 7 13 13 C 1.39726 * 120.12309 * 61.26665 * 12 10 9 14 14 C 1.37816 * 119.90049 * 179.72024 * 13 12 10 15 15 C 1.38660 * 120.13750 * 0.53443 * 14 13 12 16 16 F 1.35102 * 119.88183 * 179.74261 * 15 14 13 17 17 C 1.38751 * 120.23843 * 359.76127 * 15 14 13 18 18 Cl 1.73606 * 119.94929 * 179.97438 * 17 15 14 19 19 C 1.37944 * 120.10265 * 359.96303 * 17 15 14 20 20 C 1.46500 * 119.99947 * 227.16215 * 9 7 2 21 21 C 1.54961 * 110.92630 * 312.66424 * 20 9 7 22 22 C 1.54269 * 104.16067 * 156.29441 * 21 20 9 23 23 C 1.53878 * 106.63950 * 336.44428 * 22 21 20 24 24 C 1.54270 * 106.59672 * 359.97438 * 23 22 21 25 25 H 0.97001 * 119.99855 * 4.96041 * 1 2 3 26 26 H 1.08005 * 120.05141 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.93692 * 180.25843 * 14 13 12 28 28 H 1.08005 * 120.06966 * 180.02562 * 19 17 15 29 29 H 1.09000 * 110.66987 * 189.35384 * 20 9 7 30 30 H 1.09002 * 110.47762 * 37.64155 * 21 20 9 31 31 H 1.08999 * 110.52984 * 274.97782 * 21 20 9 32 32 H 1.09005 * 110.03178 * 217.13748 * 22 21 20 33 33 H 1.08996 * 110.02995 * 95.75561 * 22 21 20 34 34 H 1.08997 * 110.03251 * 119.25945 * 23 22 21 35 35 H 1.08996 * 110.02952 * 240.64418 * 23 22 21 36 36 H 1.08997 * 110.48292 * 142.28893 * 24 23 22 37 37 H 1.09000 * 110.48166 * 264.79335 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0465 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5453 1.4403 0.7001 7 6 2.0089 -1.2040 -0.0005 8 1 3.0384 -1.2334 0.3247 9 7 1.3886 -2.3524 -0.4134 10 6 0.6754 -2.3592 -1.5569 11 8 0.6760 -1.3814 -2.2798 12 6 -0.1067 -3.5537 -1.9318 13 6 -1.1395 -4.0035 -1.1051 14 6 -1.8705 -5.1158 -1.4624 15 6 -1.5759 -5.7955 -2.6345 16 9 -2.2924 -6.8884 -2.9772 17 6 -0.5476 -5.3575 -3.4567 18 17 -0.1847 -6.2145 -4.9222 19 6 0.1868 -4.2419 -3.1115 20 6 1.5002 -3.5739 0.3877 21 6 2.9716 -3.8336 0.7987 22 6 2.8610 -4.7105 2.0632 23 6 1.4734 -4.4365 2.6693 24 6 0.7885 -3.4019 1.7526 25 1 -0.4850 0.8369 -0.0726 26 1 -1.3672 -3.4779 -0.1895 27 1 -2.6716 -5.4616 -0.8259 28 1 0.9868 -3.9012 -3.7520 29 1 1.0947 -4.4280 -0.1546 30 1 3.4748 -2.8945 1.0286 31 1 3.5004 -4.3676 0.0092 32 1 3.6399 -4.4384 2.7755 33 1 2.9507 -5.7634 1.7963 34 1 0.8893 -5.3564 2.6959 35 1 1.5790 -4.0324 3.6761 36 1 -0.2751 -3.6208 1.6584 37 1 0.9368 -2.3933 2.1382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160584407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:02 Heat of formation + Delta-G solvation = -76.551282 kcal Electronic energy + Delta-G solvation = -24014.506475 eV Core-core repulsion = 20310.308523 eV Total energy + Delta-G solvation = -3704.197952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05852 -41.19015 -39.44765 -38.29401 -37.58068 -35.37387 -33.61654 -32.17150 -31.62143 -29.43033 -28.37401 -27.05774 -24.45059 -24.16132 -21.82010 -21.34570 -20.89881 -19.17197 -18.63031 -17.89447 -17.66649 -16.98578 -16.80979 -16.48299 -16.18573 -15.83180 -15.33112 -15.12635 -14.86169 -14.56172 -14.32527 -14.11990 -14.01652 -13.81130 -13.43426 -12.93486 -12.91429 -12.71644 -12.56824 -12.46199 -12.16316 -12.10087 -11.96910 -11.93200 -11.78619 -11.35718 -11.07103 -10.72862 -10.37011 -10.13141 -9.70699 -9.16343 -8.25462 -6.01694 -0.29302 -0.05366 0.83476 1.37695 1.46787 1.49966 2.01707 2.35027 2.45850 2.90815 2.97395 3.23056 3.56335 3.75646 3.93087 3.96174 3.98965 4.10029 4.24527 4.46001 4.54358 4.70579 4.71312 4.73015 4.79862 4.85497 4.90877 4.98307 5.10453 5.23018 5.26010 5.30584 5.44294 5.52139 5.57113 5.62036 5.67371 6.21538 6.99810 7.12031 7.60141 8.21659 8.81389 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.005253 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.139852 B = 5329.431697 C = 6308.724568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.345 4.345 8 H 0.083 0.917 9 N -0.439 5.439 10 C 0.510 3.490 11 O -0.596 6.596 12 C -0.105 4.105 13 C -0.058 4.058 14 C -0.122 4.122 15 C 0.111 3.889 16 F -0.124 7.124 17 C -0.074 4.074 18 Cl -0.044 7.044 19 C -0.059 4.059 20 C 0.120 3.880 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.120 4.120 25 H 0.261 0.739 26 H 0.139 0.861 27 H 0.183 0.817 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -14.510 1.781 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.220 1.220 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.472 4.472 8 H 0.101 0.899 9 N -0.157 5.157 10 C 0.299 3.701 11 O -0.480 6.480 12 C -0.109 4.109 13 C -0.077 4.077 14 C -0.141 4.141 15 C 0.091 3.909 16 F -0.103 7.103 17 C -0.101 4.101 18 Cl -0.015 7.015 19 C -0.079 4.079 20 C 0.016 3.984 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.159 4.159 25 H 0.070 0.930 26 H 0.157 0.843 27 H 0.200 0.800 28 H 0.157 0.843 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.106 -14.028 1.393 14.140 hybrid contribution 0.162 1.229 -0.546 1.355 sum -0.944 -12.799 0.847 12.861 Atomic orbital electron populations 1.69914 1.07698 1.28208 1.44570 1.25966 0.95398 1.02330 0.93877 0.85514 0.79464 0.79367 0.77448 1.22038 1.20800 1.17662 1.19088 0.95757 0.85859 1.46479 0.89911 1.43330 1.45894 1.09415 1.17064 1.18420 0.83210 0.86662 0.81782 1.90595 1.66447 1.37512 1.53441 1.20222 0.98635 0.96125 0.95918 1.21329 0.92736 0.94749 0.98888 1.21273 1.01993 0.95247 0.95577 1.17528 0.91884 0.86428 0.95082 1.91535 1.76051 1.50644 1.92023 1.20765 0.99687 0.97694 0.91983 1.98370 1.94119 1.75770 1.33210 1.20858 0.99145 0.92411 0.95440 1.22395 0.96688 0.87165 0.92170 1.22603 0.95893 1.00087 0.98249 1.22033 0.97374 0.99707 0.95846 1.22058 0.96053 0.98654 0.98441 1.22524 0.98791 0.99413 0.95177 0.92984 0.84275 0.79977 0.84303 0.89661 0.92256 0.91892 0.91179 0.90228 0.90166 0.91531 0.92356 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.93 12.38 21.68 0.27 -49.67 16 2 C 0.03 1.69 4.36 84.95 0.37 2.06 16 3 Si 0.96 44.34 29.60 68.60 2.03 46.38 16 4 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.34 -18.06 7.71 84.09 0.65 -17.41 16 8 H 0.08 4.21 6.43 -2.91 -0.02 4.19 16 9 N -0.44 -20.77 2.53 -609.81 -1.54 -22.31 16 10 C 0.51 25.42 6.27 86.72 0.54 25.96 16 11 O -0.60 -35.70 15.59 -4.03 -0.06 -35.76 16 12 C -0.11 -4.07 4.26 -20.09 -0.09 -4.16 16 13 C -0.06 -1.87 8.33 22.53 0.19 -1.68 16 14 C -0.12 -3.03 10.01 22.27 0.22 -2.81 16 15 C 0.11 2.94 7.28 22.49 0.16 3.11 16 16 F -0.12 -3.10 16.83 44.97 0.76 -2.34 16 17 C -0.07 -2.14 6.32 22.32 0.14 -2.00 16 18 Cl -0.04 -1.13 28.60 -2.72 -0.08 -1.21 16 19 C -0.06 -2.01 9.56 22.55 0.22 -1.80 16 20 C 0.12 4.37 2.66 46.31 0.12 4.49 16 21 C -0.13 -4.17 6.30 31.70 0.20 -3.97 16 22 C -0.11 -2.69 6.80 31.32 0.21 -2.48 16 23 C -0.11 -2.83 6.80 31.32 0.21 -2.62 16 24 C -0.12 -4.08 6.42 31.67 0.20 -3.88 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.14 4.66 7.12 -2.91 -0.02 4.64 16 27 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 29 H 0.09 2.86 5.86 -2.39 -0.01 2.85 16 30 H 0.06 2.17 6.14 -2.39 -0.01 2.16 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.88 7.20 -2.39 -0.02 1.86 16 37 H 0.05 1.97 7.53 -2.39 -0.02 1.96 16 Total: -1.00 -66.14 325.35 5.84 -60.30 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.10 Total: 11.79 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 3.36 Total: -7.19 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.27 Total: -71.97 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.06 Total: -35.76 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.76 Total: -2.34 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -66.14 5.84 -60.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.250 kcal (2) G-P(sol) polarization free energy of solvation -66.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds