Wall clock time and date at job start Tue Mar 31 2020 10:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 S 1.81396 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54398 * 291.62648 * 11 10 9 13 13 O 1.42095 * 110.54373 * 68.37936 * 11 10 9 14 14 N 1.65608 * 104.44869 * 180.02562 * 11 10 9 15 15 C 1.46500 * 119.99645 * 64.99969 * 14 11 10 16 16 H 1.08996 * 109.69615 * 24.44699 * 15 14 11 17 17 C 1.53401 * 109.69763 * 263.85115 * 15 14 11 18 18 O 1.42817 * 108.38006 * 175.59770 * 17 15 14 19 19 C 1.35852 * 117.84872 * 49.23387 * 18 17 15 20 20 C 1.39148 * 118.49646 * 162.96720 * 19 18 17 21 21 C 1.37968 * 120.21111 * 179.54368 * 20 19 18 22 22 C 1.38287 * 119.96000 * 0.02645 * 21 20 19 23 23 C 1.38104 * 119.98247 * 0.08163 * 22 21 20 24 24 C 1.38368 * 121.80231 * 342.68668 * 19 18 17 25 25 C 1.50768 * 121.40763 * 0.55548 * 24 19 18 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 28 28 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 29 29 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 30 30 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 31 31 H 0.96992 * 119.99774 * 245.00207 * 14 11 10 32 32 H 1.08998 * 109.68470 * 295.32074 * 17 15 14 33 33 H 1.08999 * 109.68408 * 55.87127 * 17 15 14 34 34 H 1.07997 * 119.89103 * 359.57275 * 20 19 18 35 35 H 1.08000 * 120.02049 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.01412 * 180.10085 * 22 21 20 37 37 H 1.08003 * 119.84127 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.43967 * 222.11287 * 25 24 19 39 39 H 1.09007 * 109.43480 * 102.24430 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 16 1.3385 -5.2329 0.0168 12 8 0.6642 -5.4145 1.2544 13 8 0.6649 -5.4248 -1.2195 14 7 2.5208 -6.3926 0.0225 15 6 3.4185 -6.5176 1.1735 16 1 2.9343 -6.1137 2.0626 17 6 4.7197 -5.7528 0.8998 18 8 5.5293 -5.8063 2.0752 19 6 5.7225 -7.0181 2.6581 20 6 6.7696 -7.1598 3.5635 21 6 6.9921 -8.3722 4.1832 22 6 6.1732 -9.4510 3.9043 23 6 5.1345 -9.3145 3.0045 24 6 4.9068 -8.1001 2.3785 25 6 3.7653 -7.9913 1.3995 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5529 0.8956 28 1 0.6244 -2.5609 -0.8844 29 1 2.8721 -3.6081 -0.8798 30 1 2.8721 -3.6002 0.9002 31 1 2.6188 -6.9889 -0.7361 32 1 5.2498 -6.2160 0.0676 33 1 4.4916 -4.7147 0.6580 34 1 7.4097 -6.3179 3.7822 35 1 7.8054 -8.4786 4.8858 36 1 6.3456 -10.4000 4.3901 37 1 4.4960 -10.1585 2.7886 38 1 2.8945 -8.5118 1.7982 39 1 4.0557 -8.4450 0.4518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171980335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:07 Heat of formation + Delta-G solvation = -96.518515 kcal Electronic energy + Delta-G solvation = -23493.714061 eV Core-core repulsion = 19914.154276 eV Total energy + Delta-G solvation = -3579.559785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94220 -37.84186 -36.72443 -36.11050 -35.52178 -33.95027 -32.59101 -31.24766 -30.51626 -29.20310 -26.18482 -25.52355 -23.56462 -22.66177 -21.72243 -20.51162 -19.12627 -18.04893 -17.66610 -17.08002 -16.55268 -16.10382 -15.80248 -15.51246 -15.14133 -14.75129 -14.57665 -14.54812 -14.09486 -13.69910 -13.53265 -13.42655 -13.23817 -12.56308 -12.15752 -11.99531 -11.86371 -11.79442 -11.68803 -11.59109 -11.54473 -11.11902 -11.05356 -11.01239 -10.86194 -10.43606 -10.41837 -9.89881 -9.58493 -9.13042 -9.03730 -8.52944 -8.36487 -6.14872 -4.20613 0.65692 1.06549 1.19927 2.83363 3.19744 3.24464 3.31996 3.35282 3.51968 4.11147 4.26777 4.32106 4.36296 4.50001 4.59587 4.64436 4.82476 4.85549 5.07198 5.16716 5.18667 5.20566 5.26695 5.30481 5.44110 5.58037 5.61619 5.69062 5.77112 5.87396 6.05026 6.21226 6.28794 6.41467 6.53882 6.90858 7.24004 7.25797 7.31553 7.78170 8.13898 8.82983 9.44621 10.96177 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.003593 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.173266 B = 7790.552383 C = 9038.972827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.593 4.593 11 S 2.589 3.411 12 O -0.962 6.962 13 O -0.963 6.963 14 N -1.117 6.117 15 C 0.114 3.886 16 H 0.110 0.890 17 C 0.037 3.963 18 O -0.307 6.307 19 C 0.131 3.869 20 C -0.147 4.147 21 C -0.089 4.089 22 C -0.154 4.154 23 C -0.083 4.083 24 C -0.157 4.157 25 C -0.080 4.080 26 H 0.265 0.735 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.415 0.585 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.379 -18.736 4.387 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.727 4.727 11 S 2.686 3.314 12 O -0.952 6.952 13 O -0.953 6.953 14 N -0.874 5.874 15 C 0.005 3.995 16 H 0.128 0.872 17 C -0.040 4.040 18 O -0.219 6.219 19 C 0.085 3.915 20 C -0.166 4.166 21 C -0.107 4.107 22 C -0.172 4.172 23 C -0.101 4.101 24 C -0.159 4.159 25 C -0.118 4.118 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.248 0.752 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.321 -18.525 4.603 22.719 hybrid contribution 0.954 0.848 -0.470 1.360 sum 13.274 -17.676 4.133 22.489 Atomic orbital electron populations 1.69959 1.06127 1.27145 1.49573 1.25065 0.94971 0.99583 0.94854 0.86412 0.79958 0.83144 0.77772 1.19600 1.20811 1.20773 1.21028 0.93115 0.89687 1.52153 0.91918 1.18972 0.92621 0.90457 0.98990 1.30578 1.13870 1.18093 1.10117 1.05750 0.74714 0.76645 0.74266 1.93556 1.71139 1.84964 1.45575 1.93565 1.71354 1.85205 1.45175 1.55862 1.52193 1.52355 1.26941 1.21383 0.90744 0.97238 0.90095 0.87239 1.23764 0.90517 1.03647 0.86099 1.86083 1.67554 1.26846 1.41414 1.18808 0.93808 0.84554 0.94301 1.20632 0.97618 0.98866 0.99486 1.20941 0.99036 0.92123 0.98580 1.21012 0.96876 0.99185 1.00161 1.20894 0.97433 0.96127 0.95630 1.19782 0.98730 0.94475 1.02880 1.20746 0.96709 0.95728 0.98635 0.92551 0.94739 0.94754 0.85842 0.86124 0.75183 0.90795 0.86296 0.85070 0.85451 0.85899 0.85729 0.88949 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -10.75 5.15 37.16 0.19 -10.56 16 11 S 2.59 43.94 5.44 -107.50 -0.58 43.36 16 12 O -0.96 -19.42 17.40 -57.54 -1.00 -20.42 16 13 O -0.96 -19.10 18.08 -57.54 -1.04 -20.14 16 14 N -1.12 -13.14 5.38 -4.68 -0.03 -13.17 16 15 C 0.11 1.30 2.92 -67.69 -0.20 1.10 16 16 H 0.11 1.41 7.49 -51.93 -0.39 1.02 16 17 C 0.04 0.40 6.64 37.36 0.25 0.65 16 18 O -0.31 -3.87 10.27 -19.28 -0.20 -4.06 16 19 C 0.13 1.53 6.47 -39.20 -0.25 1.27 16 20 C -0.15 -1.51 9.94 -39.34 -0.39 -1.90 16 21 C -0.09 -0.75 10.04 -39.66 -0.40 -1.15 16 22 C -0.15 -1.27 10.04 -39.61 -0.40 -1.67 16 23 C -0.08 -0.74 9.67 -39.53 -0.38 -1.12 16 24 C -0.16 -1.64 5.75 -104.44 -0.60 -2.25 16 25 C -0.08 -0.76 5.41 -27.81 -0.15 -0.91 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.12 1.96 6.97 -51.92 -0.36 1.59 16 31 H 0.41 3.81 8.78 -34.47 -0.30 3.51 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.12 1.28 5.94 -51.93 -0.31 0.97 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.66 8.12 -51.92 -0.42 0.24 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -35.15 338.59 -10.04 -45.19 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.13 Total: 2.49 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.88 Total: -28.88 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.71 Total: -38.67 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.24 Total: -44.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 43.94 SS G_CDS: -0.58 Total: 43.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.15 -10.04 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171980335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.324 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds