Wall clock time and date at job start Tue Mar 31 2020 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 S 1.81396 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54398 * 291.62648 * 11 10 9 13 13 O 1.42095 * 110.54373 * 68.37936 * 11 10 9 14 14 N 1.65608 * 104.44869 * 180.02562 * 11 10 9 15 15 C 1.46500 * 119.99645 * 64.99969 * 14 11 10 16 16 H 1.08996 * 109.69615 * 24.44699 * 15 14 11 17 17 C 1.53401 * 109.69763 * 263.85115 * 15 14 11 18 18 O 1.42817 * 108.38006 * 175.59770 * 17 15 14 19 19 C 1.35852 * 117.84872 * 49.23387 * 18 17 15 20 20 C 1.39148 * 118.49646 * 162.96720 * 19 18 17 21 21 C 1.37968 * 120.21111 * 179.54368 * 20 19 18 22 22 C 1.38287 * 119.96000 * 0.02645 * 21 20 19 23 23 C 1.38104 * 119.98247 * 0.08163 * 22 21 20 24 24 C 1.38368 * 121.80231 * 342.68668 * 19 18 17 25 25 C 1.50768 * 121.40763 * 0.55548 * 24 19 18 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 28 28 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 29 29 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 30 30 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 31 31 H 0.96992 * 119.99774 * 245.00207 * 14 11 10 32 32 H 1.08998 * 109.68470 * 295.32074 * 17 15 14 33 33 H 1.08999 * 109.68408 * 55.87127 * 17 15 14 34 34 H 1.07997 * 119.89103 * 359.57275 * 20 19 18 35 35 H 1.08000 * 120.02049 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.01412 * 180.10085 * 22 21 20 37 37 H 1.08003 * 119.84127 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.43967 * 222.11287 * 25 24 19 39 39 H 1.09007 * 109.43480 * 102.24430 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 16 1.3385 -5.2329 0.0168 12 8 0.6642 -5.4145 1.2544 13 8 0.6649 -5.4248 -1.2195 14 7 2.5208 -6.3926 0.0225 15 6 3.4185 -6.5176 1.1735 16 1 2.9343 -6.1137 2.0626 17 6 4.7197 -5.7528 0.8998 18 8 5.5293 -5.8063 2.0752 19 6 5.7225 -7.0181 2.6581 20 6 6.7696 -7.1598 3.5635 21 6 6.9921 -8.3722 4.1832 22 6 6.1732 -9.4510 3.9043 23 6 5.1345 -9.3145 3.0045 24 6 4.9068 -8.1001 2.3785 25 6 3.7653 -7.9913 1.3995 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5529 0.8956 28 1 0.6244 -2.5609 -0.8844 29 1 2.8721 -3.6081 -0.8798 30 1 2.8721 -3.6002 0.9002 31 1 2.6188 -6.9889 -0.7361 32 1 5.2498 -6.2160 0.0676 33 1 4.4916 -4.7147 0.6580 34 1 7.4097 -6.3179 3.7822 35 1 7.8054 -8.4786 4.8858 36 1 6.3456 -10.4000 4.3901 37 1 4.4960 -10.1585 2.7886 38 1 2.8945 -8.5118 1.7982 39 1 4.0557 -8.4450 0.4518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171980335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:06 Heat of formation + Delta-G solvation = -122.176153 kcal Electronic energy + Delta-G solvation = -23494.826660 eV Core-core repulsion = 19914.154276 eV Total energy + Delta-G solvation = -3580.672383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72052 -38.60470 -38.19986 -37.16358 -36.96644 -35.91078 -33.40298 -33.15721 -31.23354 -30.06113 -27.68938 -26.75020 -24.39351 -23.60695 -23.35646 -21.33339 -20.43423 -19.20713 -18.80380 -18.33889 -17.97698 -17.08587 -17.03841 -16.73385 -16.53744 -16.21495 -15.59429 -15.41283 -15.14915 -14.82721 -14.56134 -14.47315 -14.23328 -14.04696 -13.71725 -13.27806 -13.18972 -13.11490 -12.96346 -12.88276 -12.78460 -12.54610 -12.40074 -12.26178 -12.11358 -11.85848 -11.73155 -11.65141 -11.15931 -10.65532 -10.52632 -9.71895 -9.11017 -8.26368 -6.39867 -0.76415 0.38161 0.49042 1.41136 1.41482 1.54704 1.66477 2.34667 2.37899 2.73094 2.82694 3.07589 3.18944 3.45536 3.52093 3.72876 3.84217 3.97177 4.02842 4.07520 4.25500 4.35159 4.38940 4.47129 4.56224 4.62502 4.72445 4.78114 4.94212 4.99473 5.12401 5.27081 5.27575 5.36769 5.53274 5.62694 5.68678 5.88747 6.03752 6.06562 6.46423 6.74209 7.30479 8.86110 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.003593 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.173266 B = 7790.552383 C = 9038.972827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.593 4.593 11 S 2.619 3.381 12 O -0.996 6.996 13 O -0.991 6.991 14 N -1.092 6.092 15 C 0.110 3.890 16 H 0.091 0.909 17 C 0.033 3.967 18 O -0.326 6.326 19 C 0.101 3.899 20 C -0.164 4.164 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.089 4.089 24 C -0.168 4.168 25 C -0.076 4.076 26 H 0.267 0.733 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.431 0.569 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.741 -20.216 4.512 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.725 4.725 11 S 2.715 3.285 12 O -0.986 6.986 13 O -0.981 6.981 14 N -0.854 5.854 15 C 0.002 3.998 16 H 0.109 0.891 17 C -0.044 4.044 18 O -0.239 6.239 19 C 0.056 3.944 20 C -0.183 4.183 21 C -0.108 4.108 22 C -0.171 4.171 23 C -0.107 4.107 24 C -0.170 4.170 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.024 0.976 28 H 0.028 0.972 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.269 0.731 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.116 0.884 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.697 -20.014 4.715 25.274 hybrid contribution 0.271 1.185 -0.449 1.296 sum 14.968 -18.829 4.265 24.429 Atomic orbital electron populations 1.70101 1.08033 1.28232 1.51021 1.26092 0.95834 1.03826 0.94462 0.85287 0.79217 0.78155 0.77736 1.17920 1.20383 1.20515 1.21551 0.94035 0.90741 1.51257 0.90506 1.18818 0.93561 0.92948 0.96484 1.30486 1.12944 1.16557 1.12496 1.04548 0.74656 0.76472 0.72798 1.93514 1.72562 1.85445 1.47065 1.93521 1.72713 1.85635 1.46270 1.55225 1.51279 1.50935 1.27963 1.21470 0.90504 0.99005 0.88820 0.89113 1.23831 0.90294 1.03688 0.86545 1.86044 1.67954 1.27844 1.42071 1.19118 0.95119 0.84691 0.95459 1.20870 0.97714 0.99893 0.99798 1.21286 0.99606 0.91456 0.98407 1.21398 0.96107 1.00138 0.99506 1.21213 0.97912 0.96182 0.95344 1.19939 0.98808 0.94804 1.03430 1.20762 0.96778 0.94137 0.99775 0.92421 0.97558 0.97248 0.83138 0.84213 0.73101 0.88642 0.86507 0.84894 0.83000 0.83287 0.83617 0.88445 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.07 4.98 29.85 0.15 1.21 16 10 C -0.59 -21.36 5.15 71.98 0.37 -20.99 16 11 S 2.62 88.64 5.44 -56.49 -0.31 88.34 16 12 O -1.00 -40.85 17.40 -127.65 -2.22 -43.07 16 13 O -0.99 -39.31 18.08 -127.65 -2.31 -41.61 16 14 N -1.09 -23.96 5.38 -168.73 -0.91 -24.86 16 15 C 0.11 2.36 2.92 45.15 0.13 2.49 16 16 H 0.09 2.32 7.49 -2.39 -0.02 2.30 16 17 C 0.03 0.68 6.64 72.12 0.48 1.16 16 18 O -0.33 -8.04 10.27 -91.89 -0.94 -8.99 16 19 C 0.10 2.27 6.47 22.52 0.15 2.41 16 20 C -0.16 -3.21 9.94 22.42 0.22 -2.99 16 21 C -0.09 -1.33 10.04 22.22 0.22 -1.10 16 22 C -0.15 -2.09 10.04 22.25 0.22 -1.86 16 23 C -0.09 -1.35 9.67 22.30 0.22 -1.14 16 24 C -0.17 -3.22 5.75 -19.75 -0.11 -3.34 16 25 C -0.08 -1.29 5.41 29.89 0.16 -1.13 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.15 4.54 8.14 -2.39 -0.02 4.52 16 30 H 0.14 4.46 6.97 -2.39 -0.02 4.44 16 31 H 0.43 6.86 8.78 -96.75 -0.85 6.01 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.12 2.36 5.94 -2.39 -0.01 2.35 16 34 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.32 8.12 -2.38 -0.02 1.30 16 Total: -1.00 -77.64 338.59 -1.25 -78.89 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.22 Total: 16.57 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 2.90 Total: -54.14 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -0.62 Total: -81.21 kcal Atomic # 8 Polarization: -88.20 SS G_CDS: -5.47 Total: -93.67 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 88.64 SS G_CDS: -0.31 Total: 88.34 kcal Total: -77.64 -1.25 -78.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171980335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.287 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds