Wall clock time and date at job start Tue Mar 31 2020 10:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48505 * 109.46931 * 274.99437 * 3 2 1 5 5 H 1.48496 * 109.47018 * 34.99618 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.99882 * 3 2 1 7 7 C 1.37884 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99472 * 175.59533 * 7 2 1 9 9 C 1.50703 * 119.99946 * 355.60080 * 7 2 1 10 10 H 1.08997 * 109.49562 * 305.59008 * 9 7 2 11 11 C 1.53036 * 109.49548 * 185.52863 * 9 7 2 12 12 C 1.53041 * 109.54061 * 178.68493 * 11 9 7 13 13 C 1.53187 * 109.31071 * 61.36036 * 12 11 9 14 14 N 1.46926 * 108.77914 * 305.36450 * 13 12 11 15 15 C 1.34774 * 120.63284 * 233.58528 * 14 13 12 16 16 O 1.21570 * 119.99791 * 183.54982 * 15 14 13 17 17 C 1.47689 * 120.00360 * 3.55277 * 15 14 13 18 18 C 1.39662 * 120.16067 * 325.53905 * 17 15 14 19 19 C 1.37960 * 119.86798 * 179.97438 * 18 17 15 20 20 Cl 1.73594 * 119.90636 * 180.02562 * 19 18 17 21 21 C 1.38566 * 120.18767 * 359.72518 * 19 18 17 22 22 C 1.38191 * 120.32656 * 0.55024 * 21 19 18 23 23 C 1.38317 * 120.13100 * 359.45009 * 22 21 19 24 24 F 1.35108 * 120.09578 * 180.25257 * 23 22 21 25 25 C 1.46926 * 118.73344 * 53.86606 * 14 13 12 26 26 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46012 * 58.65866 * 11 9 7 28 28 H 1.09003 * 109.44728 * 298.69458 * 11 9 7 29 29 H 1.09005 * 109.48901 * 301.41193 * 12 11 9 30 30 H 1.08996 * 109.49722 * 181.31599 * 12 11 9 31 31 H 1.09003 * 109.58200 * 185.58175 * 13 12 11 32 32 H 1.08992 * 109.70589 * 65.22980 * 13 12 11 33 33 H 1.08006 * 120.06513 * 359.95628 * 18 17 15 34 34 H 1.08001 * 119.83795 * 180.27611 * 21 19 18 35 35 H 1.08005 * 119.93425 * 179.72109 * 22 21 19 36 36 H 1.09001 * 109.59160 * 65.92481 * 25 14 13 37 37 H 1.09000 * 109.58350 * 186.35041 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0713 9 6 1.2543 -2.4973 0.1012 10 1 0.6116 -2.4799 0.9814 11 6 2.2510 -3.6526 0.2192 12 6 1.4899 -4.9734 0.3545 13 6 0.6365 -5.1969 -0.8979 14 7 -0.2235 -4.0229 -1.1000 15 6 -1.5572 -4.1634 -1.2337 16 8 -2.2506 -3.1920 -1.4647 17 6 -2.1763 -5.4976 -1.0996 18 6 -1.4956 -6.6346 -1.5403 19 6 -2.0794 -7.8779 -1.4116 20 17 -1.2338 -9.2920 -1.9585 21 6 -3.3362 -8.0019 -0.8413 22 6 -4.0192 -6.8816 -0.4077 23 6 -3.4465 -5.6285 -0.5302 24 9 -4.1128 -4.5342 -0.1013 25 6 0.3989 -2.6933 -1.1597 26 1 -0.4850 0.8400 0.0004 27 1 2.8780 -3.5030 1.0982 28 1 2.8772 -3.6841 -0.6724 29 1 0.8446 -4.9330 1.2321 30 1 2.2001 -5.7932 0.4619 31 1 0.0178 -6.0844 -0.7648 32 1 1.2837 -5.3293 -1.7648 33 1 -0.5141 -6.5407 -1.9814 34 1 -3.7860 -8.9784 -0.7392 35 1 -5.0003 -6.9851 0.0318 36 1 1.0290 -2.6241 -2.0464 37 1 -0.3766 -1.9283 -1.1994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:36 Heat of formation + Delta-G solvation = -46.731788 kcal Electronic energy + Delta-G solvation = -23751.302925 eV Core-core repulsion = 20048.398043 eV Total energy + Delta-G solvation = -3702.904882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.88688 -40.29681 -38.51826 -36.82877 -36.55416 -33.65445 -32.10732 -31.43570 -30.46660 -29.67584 -25.51263 -25.23786 -23.40969 -22.91228 -21.78853 -20.23315 -18.87419 -17.53961 -17.32585 -16.75631 -16.25422 -15.95946 -15.57818 -15.03408 -14.68509 -14.51397 -14.28851 -13.79909 -13.48666 -13.46085 -13.26287 -12.99172 -12.65346 -12.56804 -12.18166 -11.86225 -11.74645 -11.47171 -11.31360 -11.01220 -10.80878 -10.57104 -10.40875 -10.28322 -9.92344 -9.55848 -9.28881 -9.09042 -8.91828 -8.77456 -8.49690 -7.83396 -6.02220 -4.10582 0.53000 0.72193 1.77504 2.82593 3.28798 3.35635 3.38295 3.40904 3.65055 4.00102 4.31459 4.41517 4.47021 4.74013 4.84036 5.19487 5.26287 5.28875 5.36555 5.44006 5.60033 5.66924 5.72029 5.75518 5.91615 6.11514 6.26806 6.37101 6.56268 6.60588 6.79957 6.92603 7.07636 7.16219 7.58815 7.80868 7.94498 8.11339 8.34737 8.68412 8.94399 9.55478 11.03989 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.004066 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.538797 B = 6884.120951 C = 7880.739320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.077 3.923 14 N -0.593 5.593 15 C 0.546 3.454 16 O -0.518 6.518 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.059 4.059 20 Cl -0.061 7.061 21 C -0.066 4.066 22 C -0.151 4.151 23 C 0.158 3.842 24 F -0.112 7.112 25 C 0.114 3.886 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.047 0.953 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -19.422 -2.022 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.046 4.046 14 N -0.325 5.325 15 C 0.332 3.668 16 O -0.395 6.395 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.086 4.086 20 Cl -0.032 7.032 21 C -0.085 4.085 22 C -0.170 4.170 23 C 0.138 3.862 24 F -0.090 7.090 25 C -0.005 4.005 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.065 0.935 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.790 -18.812 -2.177 19.534 hybrid contribution 0.476 0.910 0.077 1.030 sum -4.314 -17.902 -2.101 18.534 Atomic orbital electron populations 1.69918 1.05807 1.26947 1.48961 1.25063 0.94853 0.99310 0.94732 0.86580 0.79895 0.83539 0.78010 1.20702 1.21145 1.19853 1.21064 0.93126 0.90081 1.51848 0.92307 1.19061 0.92702 0.92266 0.93845 0.94972 1.21643 0.98577 0.94032 1.00633 1.21950 0.98737 0.99225 0.97264 1.22552 0.94033 0.89245 0.98765 1.48430 1.04922 1.09939 1.69236 1.17863 0.82906 0.86990 0.79046 1.90853 1.61411 1.39177 1.48011 1.20307 0.94886 0.95591 1.04029 1.21588 0.99918 0.89315 0.97712 1.20774 0.94850 0.88451 1.04517 1.98382 1.77299 1.39034 1.88491 1.20999 0.92385 0.99399 0.95681 1.21078 1.01971 0.90071 1.03906 1.17752 0.89558 0.83614 0.95315 1.91626 1.79061 1.51965 1.86325 1.22487 0.98468 0.80368 0.99203 0.92612 0.92846 0.93146 0.92078 0.92011 0.88973 0.91365 0.81858 0.83657 0.83179 0.93505 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 11.66 55.43 0.65 -25.05 16 2 C 0.06 1.76 5.36 -17.82 -0.10 1.66 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.03 8.49 -34.44 -0.29 -14.32 16 8 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 9 C 0.04 0.99 2.20 -91.43 -0.20 0.79 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.08 1.16 4.97 -3.71 -0.02 1.14 16 14 N -0.59 -11.80 2.97 -173.68 -0.52 -12.31 16 15 C 0.55 11.21 7.33 -12.40 -0.09 11.12 16 16 O -0.52 -12.95 15.48 5.30 0.08 -12.87 16 17 C -0.14 -2.26 5.52 -104.92 -0.58 -2.84 16 18 C -0.07 -0.81 7.21 -39.15 -0.28 -1.09 16 19 C -0.06 -0.60 6.31 -39.56 -0.25 -0.85 16 20 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 21 C -0.07 -0.58 9.82 -39.48 -0.39 -0.97 16 22 C -0.15 -1.56 10.01 -39.57 -0.40 -1.95 16 23 C 0.16 2.33 7.24 -38.97 -0.28 2.05 16 24 F -0.11 -1.97 16.09 2.25 0.04 -1.94 16 25 C 0.11 2.74 5.49 -3.49 -0.02 2.72 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.17 3.50 -53.27 -0.19 0.99 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 1.82 5.41 -52.48 -0.28 1.53 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.12 3.33 5.42 -51.93 -0.28 3.05 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -31.53 320.65 -8.73 -40.27 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.10 Total: 0.05 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.19 Total: -7.11 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.13 Total: -37.36 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.53 -8.73 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.467 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds