Wall clock time and date at job start Tue Mar 31 2020 10:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48505 * 109.46931 * 274.99437 * 3 2 1 5 5 H 1.48496 * 109.47018 * 34.99618 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.99882 * 3 2 1 7 7 C 1.37884 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99472 * 175.59533 * 7 2 1 9 9 C 1.50703 * 119.99946 * 355.60080 * 7 2 1 10 10 H 1.08997 * 109.49562 * 305.59008 * 9 7 2 11 11 C 1.53036 * 109.49548 * 185.52863 * 9 7 2 12 12 C 1.53041 * 109.54061 * 178.68493 * 11 9 7 13 13 C 1.53187 * 109.31071 * 61.36036 * 12 11 9 14 14 N 1.46926 * 108.77914 * 305.36450 * 13 12 11 15 15 C 1.34774 * 120.63284 * 233.58528 * 14 13 12 16 16 O 1.21570 * 119.99791 * 183.54982 * 15 14 13 17 17 C 1.47689 * 120.00360 * 3.55277 * 15 14 13 18 18 C 1.39662 * 120.16067 * 325.53905 * 17 15 14 19 19 C 1.37960 * 119.86798 * 179.97438 * 18 17 15 20 20 Cl 1.73594 * 119.90636 * 180.02562 * 19 18 17 21 21 C 1.38566 * 120.18767 * 359.72518 * 19 18 17 22 22 C 1.38191 * 120.32656 * 0.55024 * 21 19 18 23 23 C 1.38317 * 120.13100 * 359.45009 * 22 21 19 24 24 F 1.35108 * 120.09578 * 180.25257 * 23 22 21 25 25 C 1.46926 * 118.73344 * 53.86606 * 14 13 12 26 26 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46012 * 58.65866 * 11 9 7 28 28 H 1.09003 * 109.44728 * 298.69458 * 11 9 7 29 29 H 1.09005 * 109.48901 * 301.41193 * 12 11 9 30 30 H 1.08996 * 109.49722 * 181.31599 * 12 11 9 31 31 H 1.09003 * 109.58200 * 185.58175 * 13 12 11 32 32 H 1.08992 * 109.70589 * 65.22980 * 13 12 11 33 33 H 1.08006 * 120.06513 * 359.95628 * 18 17 15 34 34 H 1.08001 * 119.83795 * 180.27611 * 21 19 18 35 35 H 1.08005 * 119.93425 * 179.72109 * 22 21 19 36 36 H 1.09001 * 109.59160 * 65.92481 * 25 14 13 37 37 H 1.09000 * 109.58350 * 186.35041 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0713 9 6 1.2543 -2.4973 0.1012 10 1 0.6116 -2.4799 0.9814 11 6 2.2510 -3.6526 0.2192 12 6 1.4899 -4.9734 0.3545 13 6 0.6365 -5.1969 -0.8979 14 7 -0.2235 -4.0229 -1.1000 15 6 -1.5572 -4.1634 -1.2337 16 8 -2.2506 -3.1920 -1.4647 17 6 -2.1763 -5.4976 -1.0996 18 6 -1.4956 -6.6346 -1.5403 19 6 -2.0794 -7.8779 -1.4116 20 17 -1.2338 -9.2920 -1.9585 21 6 -3.3362 -8.0019 -0.8413 22 6 -4.0192 -6.8816 -0.4077 23 6 -3.4465 -5.6285 -0.5302 24 9 -4.1128 -4.5342 -0.1013 25 6 0.3989 -2.6933 -1.1597 26 1 -0.4850 0.8400 0.0004 27 1 2.8780 -3.5030 1.0982 28 1 2.8772 -3.6841 -0.6724 29 1 0.8446 -4.9330 1.2321 30 1 2.2001 -5.7932 0.4619 31 1 0.0178 -6.0844 -0.7648 32 1 1.2837 -5.3293 -1.7648 33 1 -0.5141 -6.5407 -1.9814 34 1 -3.7860 -8.9784 -0.7392 35 1 -5.0003 -6.9851 0.0318 36 1 1.0290 -2.6241 -2.0464 37 1 -0.3766 -1.9283 -1.1994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:35 Heat of formation + Delta-G solvation = -65.674692 kcal Electronic energy + Delta-G solvation = -23752.124350 eV Core-core repulsion = 20048.398043 eV Total energy + Delta-G solvation = -3703.726307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.08556 -41.63383 -39.69267 -38.40603 -37.42875 -35.46087 -33.73614 -32.72618 -31.45360 -31.30963 -27.20735 -26.88164 -24.56252 -24.15565 -23.26212 -21.72907 -20.40257 -18.81258 -18.62385 -18.12567 -17.87968 -17.19764 -16.80047 -16.59652 -16.32688 -15.91114 -15.70796 -15.09230 -14.84958 -14.65070 -14.48204 -14.40812 -14.20713 -13.91230 -13.64385 -13.44035 -12.95770 -12.83370 -12.57091 -12.35388 -12.32574 -12.19592 -12.03813 -11.80688 -11.62347 -11.21267 -10.98034 -10.79494 -10.58310 -10.23311 -9.74769 -9.49137 -8.14218 -6.30853 -0.47817 -0.18510 0.96211 1.39343 1.39980 1.51700 1.58658 1.98877 2.36263 2.40825 3.00282 3.14822 3.24964 3.51841 3.83862 3.91118 3.98529 4.13161 4.26992 4.32204 4.51214 4.54038 4.68932 4.71831 4.75729 4.81001 4.86529 4.92253 5.05617 5.19460 5.23042 5.30640 5.45069 5.49101 5.57538 5.84637 5.93343 6.29019 6.48382 6.83001 7.11482 7.39960 8.90522 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.004066 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.538797 B = 6884.120951 C = 7880.739320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.039 3.961 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.071 3.929 14 N -0.597 5.597 15 C 0.536 3.464 16 O -0.582 6.582 17 C -0.167 4.167 18 C -0.064 4.064 19 C -0.051 4.051 20 Cl -0.039 7.039 21 C -0.042 4.042 22 C -0.132 4.132 23 C 0.125 3.875 24 F -0.141 7.141 25 C 0.127 3.873 26 H 0.259 0.741 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.182 0.818 36 H 0.046 0.954 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -23.566 -2.242 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.050 4.050 14 N -0.327 5.327 15 C 0.325 3.675 16 O -0.464 6.464 17 C -0.172 4.172 18 C -0.083 4.083 19 C -0.078 4.078 20 Cl -0.010 7.010 21 C -0.061 4.061 22 C -0.151 4.151 23 C 0.104 3.896 24 F -0.120 7.120 25 C 0.005 3.995 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.206 0.794 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.637 -23.015 -2.391 23.423 hybrid contribution 0.122 2.039 0.128 2.047 sum -3.516 -20.976 -2.263 21.389 Atomic orbital electron populations 1.70129 1.07644 1.27334 1.50562 1.25940 0.95492 1.03131 0.94522 0.85525 0.78936 0.79026 0.78084 1.20172 1.21378 1.18364 1.21526 0.93588 0.91395 1.50848 0.91667 1.18991 0.93120 0.93978 0.91959 0.99598 1.21531 0.97612 0.93981 1.01179 1.21931 0.99096 0.98522 0.96932 1.22983 0.94128 0.88235 0.99629 1.48430 1.05590 1.09878 1.68816 1.18673 0.82718 0.88537 0.77546 1.90800 1.62779 1.41930 1.50856 1.19914 0.95974 0.93790 1.07498 1.21561 1.00267 0.88993 0.97434 1.20864 0.95241 0.88282 1.03416 1.98405 1.76979 1.37408 1.88179 1.21508 0.91303 1.00567 0.92692 1.21414 1.02954 0.88204 1.02522 1.18291 0.89734 0.84519 0.97019 1.91548 1.79603 1.53837 1.86994 1.21893 0.96895 0.81859 0.98881 0.93175 0.92796 0.91961 0.93483 0.87223 0.85906 0.88698 0.80784 0.79354 0.80043 0.93532 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.27 11.66 21.45 0.25 -57.02 16 2 C 0.01 0.49 5.36 84.66 0.45 0.94 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.70 8.49 25.60 0.22 -29.48 16 8 H 0.07 3.45 7.75 -2.91 -0.02 3.42 16 9 C 0.04 1.98 2.20 -11.32 -0.02 1.96 16 10 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 11 C -0.11 -4.03 5.11 30.62 0.16 -3.87 16 12 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 13 C 0.07 2.00 4.97 86.36 0.43 2.43 16 14 N -0.60 -24.60 2.97 -821.67 -2.44 -27.04 16 15 C 0.54 23.40 7.33 86.74 0.64 24.03 16 16 O -0.58 -31.93 15.48 -3.94 -0.06 -31.99 16 17 C -0.17 -5.30 5.52 -20.06 -0.11 -5.41 16 18 C -0.06 -1.40 7.21 22.55 0.16 -1.24 16 19 C -0.05 -0.82 6.31 22.28 0.14 -0.68 16 20 Cl -0.04 -0.51 28.95 -2.72 -0.08 -0.59 16 21 C -0.04 -0.54 9.82 22.34 0.22 -0.32 16 22 C -0.13 -2.32 10.01 22.28 0.22 -2.10 16 23 C 0.12 3.69 7.24 22.67 0.16 3.85 16 24 F -0.14 -5.33 16.09 44.97 0.72 -4.60 16 25 C 0.13 6.44 5.49 86.51 0.47 6.91 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.12 2.77 3.50 -3.65 -0.01 2.76 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.18 3.33 5.41 -2.91 -0.02 3.32 16 34 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 4.18 5.42 -2.39 -0.01 4.17 16 Total: -1.00 -78.17 320.65 4.86 -73.31 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.10 Total: 7.62 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.33 Total: -6.51 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.19 Total: -84.06 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.06 Total: -31.99 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.72 Total: -4.60 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -78.17 4.86 -73.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.637 kcal (2) G-P(sol) polarization free energy of solvation -78.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds