Wall clock time and date at job start Tue Mar 31 2020 10:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99513 * 2 1 4 4 H 1.48504 * 109.46946 * 269.99973 * 3 2 1 5 5 H 1.48496 * 109.46983 * 30.00013 * 3 2 1 6 6 H 1.48497 * 109.46996 * 150.00251 * 3 2 1 7 7 C 1.37876 * 120.00565 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99718 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00107 * 284.23710 * 10 9 7 12 12 C 1.52998 * 109.47267 * 265.10174 * 11 10 9 13 13 C 1.53004 * 117.49708 * 247.06936 * 12 11 10 14 14 C 1.53002 * 117.50239 * 178.41161 * 12 11 10 15 15 C 1.34778 * 120.00027 * 104.23212 * 10 9 7 16 16 O 1.21571 * 120.00092 * 186.70652 * 15 10 9 17 17 C 1.47659 * 119.99884 * 6.71199 * 15 10 9 18 18 C 1.39699 * 120.12931 * 325.61254 * 17 15 10 19 19 C 1.37773 * 119.89529 * 180.25624 * 18 17 15 20 20 C 1.38725 * 120.15292 * 359.74916 * 19 18 17 21 21 F 1.35102 * 119.86900 * 180.02562 * 20 19 18 22 22 C 1.38564 * 120.25902 * 359.97438 * 20 19 18 23 23 C 1.38027 * 120.11019 * 0.02562 * 22 20 19 24 24 Cl 1.73601 * 120.08131 * 179.97438 * 23 22 20 25 25 H 0.96993 * 119.99943 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47474 * 60.00220 * 9 7 2 27 27 H 1.09001 * 109.47520 * 300.00432 * 9 7 2 28 28 H 1.09004 * 109.47052 * 25.10039 * 11 10 9 29 29 H 1.09004 * 109.46959 * 145.09720 * 11 10 9 30 30 H 1.08996 * 115.55105 * 32.73556 * 12 11 10 31 31 H 1.09004 * 117.49892 * 359.97438 * 13 12 11 32 32 H 1.09003 * 117.49766 * 145.01476 * 13 12 11 33 33 H 1.08993 * 117.49709 * 214.98040 * 14 12 11 34 34 H 1.08997 * 117.49300 * 359.97438 * 14 12 11 35 35 H 1.08001 * 120.05321 * 0.02562 * 18 17 15 36 36 H 1.07989 * 119.92619 * 179.72473 * 19 18 17 37 37 H 1.08007 * 119.94085 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 2.9155 -3.9660 -1.2322 12 6 2.1623 -5.0851 -1.9540 13 6 2.8428 -6.4527 -2.0412 14 6 2.7301 -5.5726 -3.2885 15 6 2.4240 -4.3118 1.1291 16 8 3.2999 -5.1542 1.1618 17 6 1.6018 -4.0547 2.3284 18 6 1.1494 -2.7621 2.6045 19 6 0.3870 -2.5267 3.7277 20 6 0.0635 -3.5710 4.5817 21 9 -0.6849 -3.3337 5.6812 22 6 0.5040 -4.8565 4.3109 23 6 1.2684 -5.1045 3.1887 24 17 1.8205 -6.7153 2.8505 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8896 28 1 2.9763 -3.0920 -1.8807 29 1 3.9214 -4.3057 -0.9850 30 1 1.0779 -5.0687 -1.8444 31 1 3.8273 -6.5550 -1.5847 32 1 2.2061 -7.3359 -1.9893 33 1 2.0194 -5.8770 -4.0567 34 1 3.6402 -5.0956 -3.6524 35 1 1.4001 -1.9480 1.9406 36 1 0.0408 -1.5270 3.9440 37 1 0.2487 -5.6658 4.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264075292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:26 Heat of formation + Delta-G solvation = -15.815150 kcal Electronic energy + Delta-G solvation = -23656.597472 eV Core-core repulsion = 19955.033236 eV Total energy + Delta-G solvation = -3701.564236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.84389 -39.97791 -38.03779 -36.73023 -36.21566 -34.95730 -32.66125 -31.01409 -30.43715 -27.87928 -26.45234 -23.56851 -22.79881 -22.58410 -22.04260 -20.54072 -19.11436 -17.56043 -16.95931 -16.72873 -16.33724 -15.70591 -15.53162 -14.80815 -14.64516 -14.57111 -14.40671 -13.81588 -13.75438 -13.47620 -13.12722 -12.76504 -12.51361 -12.27671 -11.97892 -11.55524 -11.35428 -11.24396 -11.10175 -11.05388 -11.00868 -10.72974 -10.41687 -10.21101 -10.11264 -9.80452 -9.59007 -9.12772 -8.87860 -8.53879 -8.41519 -7.79643 -6.36301 -4.46530 0.94810 1.30435 2.27407 3.13213 3.18829 3.22058 3.25846 3.64726 3.95587 4.16413 4.21055 4.37248 4.87572 4.97039 5.01769 5.12266 5.16867 5.26394 5.35224 5.42577 5.67873 5.77192 5.86352 5.99815 6.08707 6.15264 6.17135 6.27184 6.38699 6.47213 6.53280 6.57057 6.70741 6.96369 7.07125 7.40331 7.58504 7.83775 8.23442 8.62221 8.88494 9.22810 10.68342 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007420 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.881253 B = 3772.807577 C = 6490.485886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.585 5.585 11 C 0.154 3.846 12 C -0.161 4.161 13 C -0.172 4.172 14 C -0.180 4.180 15 C 0.556 3.444 16 O -0.543 6.543 17 C -0.134 4.134 18 C -0.044 4.044 19 C -0.162 4.162 20 C 0.125 3.875 21 F -0.137 7.137 22 C -0.174 4.174 23 C 0.034 3.966 24 Cl -0.042 7.042 25 H 0.269 0.731 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.204 0.796 36 H 0.145 0.855 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -7.349 2.713 7.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.088 3.912 10 N -0.314 5.314 11 C 0.031 3.969 12 C -0.180 4.180 13 C -0.209 4.209 14 C -0.218 4.218 15 C 0.344 3.656 16 O -0.423 6.423 17 C -0.138 4.138 18 C -0.062 4.062 19 C -0.181 4.181 20 C 0.105 3.895 21 F -0.115 7.115 22 C -0.193 4.193 23 C 0.006 3.994 24 Cl -0.012 7.012 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.220 0.780 36 H 0.163 0.837 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.546 -7.787 2.716 8.265 hybrid contribution 0.017 0.919 0.139 0.930 sum 0.562 -6.868 2.855 7.459 Atomic orbital electron populations 1.69926 1.05972 1.27797 1.48111 1.24990 0.94901 0.99437 0.94270 0.86505 0.79990 0.82624 0.78571 1.20307 1.20866 1.19523 1.21474 0.94021 0.90153 1.52834 0.91533 1.20266 0.88300 0.82694 0.99914 1.47989 1.43007 1.32376 1.08029 1.20836 0.94601 0.96239 0.85260 1.22762 0.99871 0.96094 0.99258 1.22951 1.02466 0.94217 1.01313 1.22902 1.03020 1.04655 0.91204 1.17904 0.83456 0.81386 0.82856 1.90728 1.32743 1.34744 1.84037 1.19982 1.02898 0.93366 0.97598 1.22834 0.90767 0.98017 0.94585 1.21308 1.02231 0.99295 0.95226 1.17753 0.93408 0.93651 0.84686 1.91498 1.73814 1.95125 1.51067 1.20716 1.03105 0.96509 0.99002 1.20590 0.97108 0.87026 0.94642 1.98386 1.88127 1.19955 1.94753 0.92124 0.94797 0.91857 0.89414 0.90854 0.88004 0.88654 0.89625 0.89231 0.88927 0.77993 0.83750 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.08 13.29 55.43 0.74 -21.35 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.02 29.54 -169.99 -5.02 14.00 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -12.92 7.55 -34.44 -0.26 -13.18 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.21 4.56 4.66 -5.19 -0.02 4.54 16 10 N -0.58 -11.83 2.50 -176.24 -0.44 -12.27 16 11 C 0.15 2.78 5.63 -4.05 -0.02 2.76 16 12 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 13 C -0.17 -2.50 10.18 -26.69 -0.27 -2.77 16 14 C -0.18 -2.38 10.25 -26.69 -0.27 -2.66 16 15 C 0.56 11.43 7.12 -12.41 -0.09 11.35 16 16 O -0.54 -11.77 14.63 5.30 0.08 -11.70 16 17 C -0.13 -2.56 5.51 -104.93 -0.58 -3.14 16 18 C -0.04 -0.83 7.41 -39.21 -0.29 -1.12 16 19 C -0.16 -2.65 10.01 -39.57 -0.40 -3.04 16 20 C 0.12 1.92 7.31 -39.28 -0.29 1.63 16 21 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 22 C -0.17 -2.61 9.79 -39.54 -0.39 -2.99 16 23 C 0.03 0.59 6.33 -39.09 -0.25 0.34 16 24 Cl -0.04 -0.69 26.64 -51.86 -1.38 -2.07 16 25 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.41 3.81 -52.13 -0.20 1.21 16 28 H 0.09 1.58 7.92 -51.93 -0.41 1.17 16 29 H 0.07 1.34 7.23 -51.93 -0.38 0.96 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.20 4.23 3.92 -52.49 -0.21 4.02 16 36 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -25.21 332.24 -8.86 -34.07 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.11 Total: 6.11 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.77 Total: -9.85 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.30 Total: -33.61 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.38 Total: -2.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -25.21 -8.86 -34.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264075292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.256 kcal (2) G-P(sol) polarization free energy of solvation -25.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds