Wall clock time and date at job start Tue Mar 31 2020 10:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99513 * 2 1 4 4 H 1.48504 * 109.46946 * 269.99973 * 3 2 1 5 5 H 1.48496 * 109.46983 * 30.00013 * 3 2 1 6 6 H 1.48497 * 109.46996 * 150.00251 * 3 2 1 7 7 C 1.37876 * 120.00565 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99718 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00107 * 284.23710 * 10 9 7 12 12 C 1.52998 * 109.47267 * 265.10174 * 11 10 9 13 13 C 1.53004 * 117.49708 * 247.06936 * 12 11 10 14 14 C 1.53002 * 117.50239 * 178.41161 * 12 11 10 15 15 C 1.34778 * 120.00027 * 104.23212 * 10 9 7 16 16 O 1.21571 * 120.00092 * 186.70652 * 15 10 9 17 17 C 1.47659 * 119.99884 * 6.71199 * 15 10 9 18 18 C 1.39699 * 120.12931 * 325.61254 * 17 15 10 19 19 C 1.37773 * 119.89529 * 180.25624 * 18 17 15 20 20 C 1.38725 * 120.15292 * 359.74916 * 19 18 17 21 21 F 1.35102 * 119.86900 * 180.02562 * 20 19 18 22 22 C 1.38564 * 120.25902 * 359.97438 * 20 19 18 23 23 C 1.38027 * 120.11019 * 0.02562 * 22 20 19 24 24 Cl 1.73601 * 120.08131 * 179.97438 * 23 22 20 25 25 H 0.96993 * 119.99943 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47474 * 60.00220 * 9 7 2 27 27 H 1.09001 * 109.47520 * 300.00432 * 9 7 2 28 28 H 1.09004 * 109.47052 * 25.10039 * 11 10 9 29 29 H 1.09004 * 109.46959 * 145.09720 * 11 10 9 30 30 H 1.08996 * 115.55105 * 32.73556 * 12 11 10 31 31 H 1.09004 * 117.49892 * 359.97438 * 13 12 11 32 32 H 1.09003 * 117.49766 * 145.01476 * 13 12 11 33 33 H 1.08993 * 117.49709 * 214.98040 * 14 12 11 34 34 H 1.08997 * 117.49300 * 359.97438 * 14 12 11 35 35 H 1.08001 * 120.05321 * 0.02562 * 18 17 15 36 36 H 1.07989 * 119.92619 * 179.72473 * 19 18 17 37 37 H 1.08007 * 119.94085 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 2.9155 -3.9660 -1.2322 12 6 2.1623 -5.0851 -1.9540 13 6 2.8428 -6.4527 -2.0412 14 6 2.7301 -5.5726 -3.2885 15 6 2.4240 -4.3118 1.1291 16 8 3.2999 -5.1542 1.1618 17 6 1.6018 -4.0547 2.3284 18 6 1.1494 -2.7621 2.6045 19 6 0.3870 -2.5267 3.7277 20 6 0.0635 -3.5710 4.5817 21 9 -0.6849 -3.3337 5.6812 22 6 0.5040 -4.8565 4.3109 23 6 1.2684 -5.1045 3.1887 24 17 1.8205 -6.7153 2.8505 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8896 28 1 2.9763 -3.0920 -1.8807 29 1 3.9214 -4.3057 -0.9850 30 1 1.0779 -5.0687 -1.8444 31 1 3.8273 -6.5550 -1.5847 32 1 2.2061 -7.3359 -1.9893 33 1 2.0194 -5.8770 -4.0567 34 1 3.6402 -5.0956 -3.6524 35 1 1.4001 -1.9480 1.9406 36 1 0.0408 -1.5270 3.9440 37 1 0.2487 -5.6658 4.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264075292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:25 Heat of formation + Delta-G solvation = -25.638202 kcal Electronic energy + Delta-G solvation = -23657.023431 eV Core-core repulsion = 19955.033236 eV Total energy + Delta-G solvation = -3701.990195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07137 -41.48126 -39.42093 -38.07490 -37.55542 -36.56459 -34.45641 -32.37610 -31.79889 -29.59227 -27.95652 -25.23266 -24.15341 -24.08310 -23.16922 -21.87275 -20.59599 -18.89432 -18.58601 -18.36355 -17.81064 -17.13241 -16.76388 -16.44539 -16.12999 -15.94546 -15.79093 -15.21902 -15.15247 -14.87635 -14.45697 -14.28081 -14.10747 -13.78348 -13.46303 -13.11084 -12.84171 -12.72887 -12.55753 -12.40944 -12.33642 -12.16663 -12.06342 -11.76875 -11.63416 -11.27929 -10.86478 -10.73118 -10.58575 -9.94681 -9.83114 -9.43259 -8.21594 -6.37360 -0.42591 -0.01999 0.94554 1.43439 1.47772 1.55421 1.71797 2.15719 2.38898 2.53863 2.95874 3.05358 3.09000 3.56452 3.66096 3.85381 3.88817 4.03289 4.09576 4.15529 4.30834 4.41342 4.63259 4.77288 4.78690 4.82538 4.85484 4.91638 5.02678 5.11374 5.14117 5.24895 5.28346 5.30106 5.59906 5.67269 5.79610 6.00860 6.55324 6.78428 7.24063 7.37187 8.82528 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007420 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.881253 B = 3772.807577 C = 6490.485886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.221 3.779 10 N -0.588 5.588 11 C 0.154 3.846 12 C -0.183 4.183 13 C -0.170 4.170 14 C -0.154 4.154 15 C 0.552 3.448 16 O -0.560 6.560 17 C -0.154 4.154 18 C -0.057 4.057 19 C -0.158 4.158 20 C 0.136 3.864 21 F -0.127 7.127 22 C -0.157 4.157 23 C 0.028 3.972 24 Cl -0.037 7.037 25 H 0.271 0.729 26 H 0.012 0.988 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -7.804 3.335 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.168 4.168 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.101 3.899 10 N -0.317 5.317 11 C 0.031 3.969 12 C -0.202 4.202 13 C -0.207 4.207 14 C -0.191 4.191 15 C 0.341 3.659 16 O -0.441 6.441 17 C -0.158 4.158 18 C -0.075 4.075 19 C -0.177 4.177 20 C 0.116 3.884 21 F -0.105 7.105 22 C -0.176 4.176 23 C 0.000 4.000 24 Cl -0.008 7.008 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.196 0.804 36 H 0.175 0.825 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.368 -8.247 3.330 8.902 hybrid contribution 0.062 1.014 0.001 1.016 sum 0.429 -7.233 3.331 7.975 Atomic orbital electron populations 1.69998 1.06955 1.28453 1.48981 1.25549 0.95478 1.01824 0.93978 0.85665 0.78845 0.79551 0.78351 1.20290 1.20402 1.19591 1.21548 0.93523 0.91090 1.52655 0.92567 1.19995 0.88245 0.82789 0.98835 1.48020 1.42753 1.31994 1.08901 1.20885 0.94552 0.96809 0.84634 1.22600 0.99009 0.96555 1.02067 1.22957 1.01918 0.93685 1.02093 1.23019 1.03328 1.02450 0.90352 1.18187 0.83430 0.81042 0.83276 1.90700 1.33489 1.35459 1.84415 1.19960 1.03872 0.94266 0.97746 1.22491 0.92259 0.97254 0.95458 1.21391 1.01380 1.00410 0.94544 1.17657 0.92841 0.93416 0.84462 1.91530 1.73442 1.95075 1.50470 1.20982 1.01200 0.97209 0.98196 1.20673 0.97526 0.86856 0.94966 1.98385 1.88163 1.19381 1.94826 0.91992 0.97021 0.91728 0.90047 0.91296 0.89248 0.89383 0.88649 0.87278 0.87769 0.80373 0.82468 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.83 13.29 21.45 0.28 -45.55 16 2 C 0.03 1.66 5.46 84.65 0.46 2.12 16 3 Si 0.95 39.06 29.54 68.60 2.03 41.08 16 4 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.55 -26.60 7.55 25.60 0.19 -26.41 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.22 10.08 4.66 85.63 0.40 10.47 16 10 N -0.59 -24.51 2.50 -829.78 -2.08 -26.59 16 11 C 0.15 5.70 5.63 86.38 0.49 6.19 16 12 C -0.18 -5.89 5.98 -10.79 -0.06 -5.96 16 13 C -0.17 -4.77 10.18 30.62 0.31 -4.46 16 14 C -0.15 -3.82 10.25 30.62 0.31 -3.51 16 15 C 0.55 23.10 7.12 86.73 0.62 23.71 16 16 O -0.56 -24.53 14.63 -3.94 -0.06 -24.59 16 17 C -0.15 -5.89 5.51 -20.07 -0.11 -6.00 16 18 C -0.06 -2.12 7.41 22.51 0.17 -1.96 16 19 C -0.16 -5.01 10.01 22.28 0.22 -4.79 16 20 C 0.14 3.86 7.31 22.46 0.16 4.02 16 21 F -0.13 -3.33 17.26 44.97 0.78 -2.56 16 22 C -0.16 -4.30 9.79 22.30 0.22 -4.08 16 23 C 0.03 0.92 6.33 22.59 0.14 1.06 16 24 Cl -0.04 -1.18 26.64 -2.72 -0.07 -1.25 16 25 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 26 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.07 2.98 3.81 -2.58 -0.01 2.97 16 28 H 0.08 3.04 7.92 -2.39 -0.02 3.02 16 29 H 0.07 2.58 7.23 -2.38 -0.02 2.56 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.09 2.61 8.04 -2.38 -0.02 2.59 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.18 7.66 3.92 -2.91 -0.01 7.64 16 36 H 0.16 4.49 8.06 -2.92 -0.02 4.46 16 37 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -53.38 332.24 5.51 -47.87 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 1.11 Total: 21.14 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 3.52 Total: -9.58 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.79 Total: -72.13 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -53.38 5.51 -47.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264075292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.235 kcal (2) G-P(sol) polarization free energy of solvation -53.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds