Wall clock time and date at job start Tue Mar 31 2020 10:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47014 * 181.01514 * 3 2 1 5 5 C 1.36798 * 120.00228 * 83.55861 * 4 3 2 6 6 H 1.07995 * 120.00294 * 168.12608 * 5 4 3 7 7 C 1.39105 * 119.99503 * 348.12355 * 5 4 3 8 8 N 1.31323 * 120.00454 * 2.46074 * 7 5 4 9 9 Si 1.86803 * 119.99534 * 182.46119 * 7 5 4 10 10 H 1.48502 * 109.46915 * 90.00184 * 9 7 5 11 11 H 1.48497 * 109.47128 * 209.99898 * 9 7 5 12 12 H 1.48497 * 109.47258 * 330.00424 * 9 7 5 13 13 C 1.34783 * 119.99825 * 263.56489 * 4 3 2 14 14 O 1.21563 * 119.99538 * 182.48407 * 13 4 3 15 15 C 1.48001 * 120.00102 * 2.47600 * 13 4 3 16 16 C 1.40060 * 120.89906 * 221.96216 * 15 13 4 17 17 C 1.37936 * 119.12570 * 180.02562 * 16 15 13 18 18 N 1.31937 * 120.98182 * 359.73967 * 17 16 15 19 19 C 1.32197 * 121.98825 * 0.52419 * 18 17 16 20 20 O 1.35685 * 119.61811 * 179.74956 * 19 18 17 21 21 C 1.42900 * 117.00039 * 359.73327 * 20 19 18 22 22 C 1.52998 * 109.47453 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.46918 * 299.99846 * 22 21 20 24 24 F 1.39898 * 109.47426 * 59.99592 * 22 21 20 25 25 C 1.38847 * 120.76174 * 359.48279 * 19 18 17 26 26 H 1.09002 * 109.47281 * 61.01890 * 3 2 1 27 27 H 1.09003 * 109.47810 * 301.01004 * 3 2 1 28 28 H 0.96996 * 119.99886 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.43708 * 359.97438 * 16 15 13 30 30 H 1.08004 * 119.50992 * 179.97438 * 17 16 15 31 31 H 1.09003 * 109.47439 * 59.99238 * 21 20 19 32 32 H 1.09000 * 109.47195 * 299.99389 * 21 20 19 33 33 H 1.09004 * 109.47550 * 179.97438 * 22 21 20 34 34 H 1.08010 * 120.52914 * 180.27532 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3819 0.0245 5 6 3.1980 2.0502 1.2137 6 1 3.7310 2.9883 1.2619 7 6 2.6155 1.5215 2.3609 8 7 2.0090 0.3577 2.3129 9 14 2.6960 2.4671 3.9700 10 1 1.5131 3.3581 4.0801 11 1 2.7030 1.5110 5.1062 12 1 3.9357 3.2838 4.0026 13 6 3.4433 1.9943 -1.1248 14 8 3.8905 3.1244 -1.1001 15 6 3.2808 1.2907 -2.4167 16 6 4.2688 1.3671 -3.4065 17 6 4.0792 0.6973 -4.5974 18 7 2.9883 -0.0133 -4.8107 19 6 2.0276 -0.1097 -3.9078 20 8 0.9233 -0.8498 -4.1799 21 6 0.8680 -1.4868 -5.4578 22 6 -0.4405 -2.2701 -5.5811 23 9 -0.5004 -3.2392 -4.5740 24 9 -1.5229 -1.3935 -5.4497 25 6 2.1379 0.5331 -2.6820 26 1 2.9715 -0.4971 -0.8990 27 1 2.9716 -0.5286 0.8808 28 1 1.6032 -0.0111 3.1130 29 1 5.1667 1.9435 -3.2399 30 1 4.8369 0.7523 -5.3651 31 1 1.7111 -2.1701 -5.5601 32 1 0.9151 -0.7317 -6.2425 33 1 -0.4829 -2.7556 -6.5561 34 1 1.3527 0.4481 -1.9452 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270256643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:20 Heat of formation + Delta-G solvation = -99.501193 kcal Electronic energy + Delta-G solvation = -25424.203619 eV Core-core repulsion = 21187.133766 eV Total energy + Delta-G solvation = -4237.069853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.087 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92510 -47.98736 -41.99839 -40.60654 -38.87534 -37.86107 -36.30349 -34.31685 -33.16838 -32.34431 -30.52906 -29.36513 -27.45053 -25.38127 -24.44392 -23.81670 -21.69959 -20.01482 -19.68075 -18.51982 -18.46864 -18.27278 -18.13528 -17.57945 -17.22582 -16.95069 -16.87902 -16.39988 -15.87456 -15.63895 -15.18438 -14.91223 -14.76684 -14.61241 -14.45957 -14.37745 -14.30752 -13.84244 -13.48647 -13.35353 -13.18291 -13.04568 -12.89886 -12.46386 -12.33856 -12.28388 -12.11569 -12.01270 -11.30064 -11.17333 -10.89429 -10.52561 -10.20069 -9.62021 -8.42890 -6.10999 -0.25782 0.08657 1.34313 1.42217 1.54081 1.63437 1.79049 1.86664 2.15935 2.25806 2.67778 2.80935 2.88704 2.94833 3.20437 3.29137 3.48237 3.51547 3.71555 3.89467 3.94291 4.01565 4.21750 4.36625 4.37997 4.42584 4.58894 4.73420 5.00177 5.14467 5.27795 5.35766 5.82485 6.05374 6.24556 6.67839 6.88606 6.93259 7.14393 7.67328 8.48927 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004356 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.604808 B = 6426.509865 C = 7720.305691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.266 3.734 3 C 0.217 3.783 4 N -0.436 5.436 5 C -0.331 4.331 6 H 0.097 0.903 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.998 3.002 10 H -0.285 1.285 11 H -0.268 1.268 12 H -0.261 1.261 13 C 0.476 3.524 14 O -0.603 6.603 15 C -0.034 4.034 16 C -0.162 4.162 17 C 0.157 3.843 18 N -0.527 5.527 19 C 0.318 3.682 20 O -0.320 6.320 21 C 0.010 3.990 22 C 0.262 3.738 23 F -0.219 7.219 24 F -0.221 7.221 25 C -0.194 4.194 26 H 0.108 0.892 27 H 0.151 0.849 28 H 0.279 0.721 29 H 0.159 0.841 30 H 0.218 0.782 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.193 0.807 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -8.208 -16.300 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.050 4.050 3 C 0.090 3.910 4 N -0.153 5.153 5 C -0.458 4.458 6 H 0.115 0.885 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.821 3.179 10 H -0.212 1.212 11 H -0.192 1.192 12 H -0.185 1.185 13 C 0.266 3.734 14 O -0.489 6.489 15 C -0.045 4.045 16 C -0.183 4.183 17 C 0.002 3.998 18 N -0.252 5.252 19 C 0.140 3.860 20 O -0.227 6.227 21 C -0.065 4.065 22 C 0.210 3.790 23 F -0.200 7.200 24 F -0.203 7.203 25 C -0.216 4.216 26 H 0.126 0.874 27 H 0.168 0.832 28 H 0.090 0.910 29 H 0.177 0.823 30 H 0.234 0.766 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.209 0.791 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.943 -8.300 -16.681 18.733 hybrid contribution -0.007 0.937 2.055 2.258 sum 1.936 -7.363 -14.627 16.490 Atomic orbital electron populations 1.80945 1.14431 1.09119 1.14525 1.29408 0.95654 0.91774 0.88198 1.19495 0.80565 0.85013 1.05879 1.43714 1.54121 1.11526 1.05964 1.19912 1.34305 1.06622 0.84923 0.88506 1.26073 0.94267 0.96860 1.02627 1.69753 1.35299 1.17264 1.31148 0.84833 0.78706 0.77858 0.76482 1.21176 1.19218 1.18504 1.18369 0.84858 0.86483 0.83657 1.90616 1.51509 1.19951 1.86812 1.20195 0.94702 0.94393 0.95185 1.22326 1.00198 1.02122 0.93638 1.23108 0.92863 0.88333 0.95501 1.67294 1.03275 1.22535 1.32084 1.19410 0.86495 0.90326 0.89728 1.86316 1.36915 1.61817 1.37692 1.24215 0.98541 0.98932 0.84847 1.22894 0.82579 0.80479 0.93097 1.92990 1.96699 1.64555 1.65801 1.92985 1.58870 1.71276 1.97129 1.21399 1.00249 1.02112 0.97847 0.87435 0.83219 0.91034 0.82320 0.76565 0.86458 0.86898 0.79093 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.69 18.48 20.00 0.37 -25.32 16 2 C 0.27 12.52 10.44 89.44 0.93 13.45 16 3 C 0.22 9.19 4.76 84.57 0.40 9.59 16 4 N -0.44 -20.93 2.60 -648.54 -1.68 -22.62 16 5 C -0.33 -17.11 9.47 84.13 0.80 -16.32 16 6 H 0.10 5.27 7.21 -2.91 -0.02 5.25 16 7 C 0.00 0.13 5.38 84.98 0.46 0.59 16 8 N -0.89 -43.57 8.05 21.69 0.17 -43.39 16 9 Si 1.00 40.28 29.55 68.60 2.03 42.31 16 10 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 13 C 0.48 22.20 7.30 86.83 0.63 22.84 16 14 O -0.60 -31.82 16.58 -3.91 -0.06 -31.88 16 15 C -0.03 -1.25 5.01 -19.90 -0.10 -1.35 16 16 C -0.16 -4.49 9.78 22.64 0.22 -4.27 16 17 C 0.16 3.30 11.16 84.61 0.94 4.25 16 18 N -0.53 -13.16 9.18 -309.16 -2.84 -16.00 16 19 C 0.32 9.99 7.49 84.78 0.63 10.62 16 20 O -0.32 -9.84 10.00 -90.04 -0.90 -10.74 16 21 C 0.01 0.19 5.53 71.98 0.40 0.59 16 22 C 0.26 4.50 5.63 71.98 0.41 4.91 16 23 F -0.22 -5.37 17.28 44.97 0.78 -4.59 16 24 F -0.22 -5.51 17.28 44.97 0.78 -4.73 16 25 C -0.19 -7.17 7.63 22.76 0.17 -6.99 16 26 H 0.11 3.87 5.65 -2.39 -0.01 3.85 16 27 H 0.15 6.46 6.07 -2.39 -0.01 6.45 16 28 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 29 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.12 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.11 1.74 8.11 -2.39 -0.02 1.72 16 33 H 0.19 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.12 5.14 4.22 -2.91 -0.01 5.12 16 Total: -1.00 -71.58 311.81 5.72 -65.85 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.18 Total: 13.20 kcal Atomic # 6 Polarization: 32.01 SS G_CDS: 5.90 Total: 37.91 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -3.98 Total: -107.33 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.97 Total: -42.62 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 1.55 Total: -9.33 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -71.58 5.72 -65.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270256643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.648 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds