Wall clock time and date at job start Tue Mar 31 2020 10:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47220 * 270.00424 * 3 2 1 5 5 H 1.48504 * 109.46982 * 30.00775 * 3 2 1 6 6 H 1.48507 * 109.47190 * 150.00109 * 3 2 1 7 7 C 1.37877 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47541 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47223 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54424 * 68.37525 * 11 10 9 13 13 O 1.42098 * 110.54275 * 291.62452 * 11 10 9 14 14 N 1.65597 * 104.45108 * 179.97438 * 11 10 9 15 15 C 1.46537 * 124.95492 * 270.02824 * 14 11 10 16 16 C 1.53750 * 105.18375 * 179.97438 * 15 14 11 17 17 H 1.09003 * 110.42469 * 241.23760 * 16 15 14 18 18 C 1.53001 * 110.42434 * 118.76170 * 16 15 14 19 19 O 1.42901 * 109.47112 * 178.43181 * 18 16 15 20 20 C 1.51226 * 104.53675 * 359.97438 * 16 15 14 21 21 C 1.38178 * 130.98463 * 180.02562 * 20 16 15 22 22 C 1.38226 * 120.14643 * 179.97438 * 21 20 16 23 23 C 1.38304 * 119.83887 * 359.97438 * 22 21 20 24 24 C 1.37827 * 120.22894 * 0.27979 * 23 22 21 25 25 C 1.38592 * 108.54183 * 359.97438 * 20 16 15 26 26 H 0.97005 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46984 * 59.99590 * 9 7 2 28 28 H 1.09005 * 109.46725 * 300.00162 * 9 7 2 29 29 H 1.08997 * 109.47093 * 59.99637 * 10 9 7 30 30 H 1.08995 * 109.46542 * 299.99855 * 10 9 7 31 31 H 1.09001 * 110.29913 * 298.92064 * 15 14 11 32 32 H 1.08994 * 110.30189 * 60.97699 * 15 14 11 33 33 H 1.09004 * 109.47043 * 298.42870 * 18 16 15 34 34 H 1.08995 * 109.46910 * 58.42988 * 18 16 15 35 35 H 0.96697 * 114.00079 * 180.02562 * 19 18 16 36 36 H 1.08002 * 119.92494 * 0.02562 * 21 20 16 37 37 H 1.08002 * 120.08301 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.88387 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.86399 * 179.70006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3381 -5.2331 0.0002 12 8 0.6636 -5.4201 -1.2365 13 8 0.6645 -5.4193 1.2375 14 7 2.5202 -6.3928 -0.0006 15 6 3.1190 -6.9804 -1.2020 16 6 4.1525 -7.9934 -0.6826 17 1 5.1535 -7.7209 -1.0170 18 6 3.7977 -9.4060 -1.1511 19 8 4.7898 -10.3246 -0.6884 20 6 4.0553 -7.8965 0.8234 21 6 4.7390 -8.5654 1.8206 22 6 4.4672 -8.2968 3.1490 23 6 3.5088 -7.3559 3.4788 24 6 2.8204 -6.6899 2.4877 25 6 3.0930 -6.9517 1.1431 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 2.3575 -7.4870 -1.7950 32 1 3.6093 -6.2093 -1.7960 33 1 2.8249 -9.6887 -0.7488 34 1 3.7611 -9.4290 -2.2402 35 1 4.6290 -11.2416 -0.9494 36 1 5.4881 -9.2990 1.5615 37 1 5.0026 -8.8199 3.9276 38 1 3.2955 -7.1458 4.5165 39 1 2.0698 -5.9598 2.7519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292521166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:19 Heat of formation + Delta-G solvation = -93.366222 kcal Electronic energy + Delta-G solvation = -23845.834898 eV Core-core repulsion = 20266.411807 eV Total energy + Delta-G solvation = -3579.423091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.67842 -37.28993 -36.79995 -36.28781 -35.65425 -33.97193 -32.59310 -31.24590 -29.61357 -29.49985 -25.77505 -25.50369 -23.10816 -22.35637 -21.49935 -20.78487 -18.98665 -17.74102 -17.61334 -16.69566 -16.43714 -16.15408 -15.85594 -15.32335 -15.18275 -14.64747 -14.59175 -14.37691 -13.76831 -13.50329 -13.37870 -12.74442 -12.66280 -12.56171 -12.52120 -11.87773 -11.85293 -11.78635 -11.74323 -11.67732 -11.36298 -11.12516 -11.04738 -10.72734 -10.63009 -10.45969 -10.40616 -10.17398 -9.78415 -9.26648 -8.75478 -8.55000 -7.86479 -6.17118 -4.23175 0.46044 1.40653 1.49235 2.71440 3.23764 3.30164 3.33089 3.69301 3.84183 4.11748 4.16807 4.33507 4.34211 4.54582 4.80667 4.92679 5.06049 5.11126 5.17788 5.18151 5.24488 5.29435 5.40930 5.46565 5.56567 5.61272 5.69116 5.83785 5.91962 6.18085 6.35040 6.37627 6.49429 6.62196 6.69176 7.09158 7.21412 7.26915 7.32900 7.75707 8.10846 8.79998 9.41994 10.93855 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.003730 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.595379 B = 7505.567153 C = 7870.140909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.581 4.581 11 S 2.585 3.415 12 O -0.952 6.952 13 O -0.947 6.947 14 N -0.944 5.944 15 C 0.120 3.880 16 C -0.050 4.050 17 H 0.102 0.898 18 C 0.088 3.912 19 O -0.568 6.568 20 C -0.132 4.132 21 C -0.062 4.062 22 C -0.156 4.156 23 C -0.085 4.085 24 C -0.155 4.155 25 C 0.169 3.831 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.379 0.621 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -19.546 0.318 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.715 4.715 11 S 2.687 3.313 12 O -0.943 6.943 13 O -0.938 6.938 14 N -0.764 5.764 15 C -0.005 4.005 16 C -0.070 4.070 17 H 0.120 0.880 18 C 0.010 3.990 19 O -0.374 6.374 20 C -0.136 4.136 21 C -0.081 4.081 22 C -0.175 4.175 23 C -0.103 4.103 24 C -0.177 4.177 25 C 0.072 3.928 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.226 0.774 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.022 -19.000 0.448 21.038 hybrid contribution 0.677 0.794 -0.339 1.097 sum 9.699 -18.206 0.109 20.629 Atomic orbital electron populations 1.69951 1.06132 1.27310 1.49380 1.25064 0.94990 0.99580 0.94778 0.86447 0.79736 0.82709 0.78283 1.20414 1.20939 1.19695 1.20975 0.93104 0.89567 1.52433 0.91948 1.19001 0.92625 0.90397 0.99027 1.30447 1.13725 1.16839 1.10532 1.06141 0.74351 0.76374 0.74458 1.93556 1.70421 1.85143 1.45135 1.93538 1.70635 1.84958 1.44658 1.56661 1.55729 1.53815 1.10240 1.21811 0.95818 0.96280 0.86550 1.20639 1.00312 0.93750 0.92255 0.88035 1.22173 0.91045 0.88485 0.97289 1.86455 1.50392 1.20759 1.79763 1.19904 0.99550 0.99796 0.94375 1.20425 0.98355 0.98027 0.91281 1.21003 1.00268 1.00355 0.95885 1.20879 0.95154 0.95421 0.98871 1.21082 1.03078 1.04119 0.89406 1.18109 0.93471 0.94129 0.87118 0.92449 0.94736 0.94662 0.85805 0.85950 0.89331 0.89323 0.93172 0.92873 0.77405 0.85510 0.85945 0.85458 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.58 -11.20 6.12 37.16 0.23 -10.97 16 11 S 2.59 47.59 5.56 -107.50 -0.60 46.99 16 12 O -0.95 -19.52 17.56 -57.54 -1.01 -20.53 16 13 O -0.95 -19.53 15.25 -57.54 -0.88 -20.41 16 14 N -0.94 -14.24 3.40 -58.12 -0.20 -14.43 16 15 C 0.12 1.41 6.73 -3.63 -0.02 1.39 16 16 C -0.05 -0.53 3.32 -91.12 -0.30 -0.84 16 17 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.09 0.76 6.26 37.16 0.23 0.99 16 19 O -0.57 -4.67 12.60 -35.23 -0.44 -5.11 16 20 C -0.13 -1.70 5.51 -104.26 -0.57 -2.28 16 21 C -0.06 -0.73 9.59 -39.61 -0.38 -1.11 16 22 C -0.16 -1.74 10.06 -39.56 -0.40 -2.13 16 23 C -0.08 -1.05 10.02 -39.71 -0.40 -1.44 16 24 C -0.16 -2.34 9.38 -39.20 -0.37 -2.71 16 25 C 0.17 2.54 6.59 -83.66 -0.55 1.98 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 30 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 31 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 1.44 9.12 45.56 0.42 1.86 16 36 H 0.13 1.31 7.55 -52.49 -0.40 0.92 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.15 2.36 6.10 -52.49 -0.32 2.04 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -35.04 339.41 -9.85 -44.89 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.47 Total: 2.52 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -3.09 Total: -29.60 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.54 Total: -39.91 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.33 Total: -46.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.60 Total: 46.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.04 -9.85 -44.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292521166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.477 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds