Wall clock time and date at job start Tue Mar 31 2020 10:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47220 * 270.00424 * 3 2 1 5 5 H 1.48504 * 109.46982 * 30.00775 * 3 2 1 6 6 H 1.48507 * 109.47190 * 150.00109 * 3 2 1 7 7 C 1.37877 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47541 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47223 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54424 * 68.37525 * 11 10 9 13 13 O 1.42098 * 110.54275 * 291.62452 * 11 10 9 14 14 N 1.65597 * 104.45108 * 179.97438 * 11 10 9 15 15 C 1.46537 * 124.95492 * 270.02824 * 14 11 10 16 16 C 1.53750 * 105.18375 * 179.97438 * 15 14 11 17 17 H 1.09003 * 110.42469 * 241.23760 * 16 15 14 18 18 C 1.53001 * 110.42434 * 118.76170 * 16 15 14 19 19 O 1.42901 * 109.47112 * 178.43181 * 18 16 15 20 20 C 1.51226 * 104.53675 * 359.97438 * 16 15 14 21 21 C 1.38178 * 130.98463 * 180.02562 * 20 16 15 22 22 C 1.38226 * 120.14643 * 179.97438 * 21 20 16 23 23 C 1.38304 * 119.83887 * 359.97438 * 22 21 20 24 24 C 1.37827 * 120.22894 * 0.27979 * 23 22 21 25 25 C 1.38592 * 108.54183 * 359.97438 * 20 16 15 26 26 H 0.97005 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46984 * 59.99590 * 9 7 2 28 28 H 1.09005 * 109.46725 * 300.00162 * 9 7 2 29 29 H 1.08997 * 109.47093 * 59.99637 * 10 9 7 30 30 H 1.08995 * 109.46542 * 299.99855 * 10 9 7 31 31 H 1.09001 * 110.29913 * 298.92064 * 15 14 11 32 32 H 1.08994 * 110.30189 * 60.97699 * 15 14 11 33 33 H 1.09004 * 109.47043 * 298.42870 * 18 16 15 34 34 H 1.08995 * 109.46910 * 58.42988 * 18 16 15 35 35 H 0.96697 * 114.00079 * 180.02562 * 19 18 16 36 36 H 1.08002 * 119.92494 * 0.02562 * 21 20 16 37 37 H 1.08002 * 120.08301 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.88387 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.86399 * 179.70006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3381 -5.2331 0.0002 12 8 0.6636 -5.4201 -1.2365 13 8 0.6645 -5.4193 1.2375 14 7 2.5202 -6.3928 -0.0006 15 6 3.1190 -6.9804 -1.2020 16 6 4.1525 -7.9934 -0.6826 17 1 5.1535 -7.7209 -1.0170 18 6 3.7977 -9.4060 -1.1511 19 8 4.7898 -10.3246 -0.6884 20 6 4.0553 -7.8965 0.8234 21 6 4.7390 -8.5654 1.8206 22 6 4.4672 -8.2968 3.1490 23 6 3.5088 -7.3559 3.4788 24 6 2.8204 -6.6899 2.4877 25 6 3.0930 -6.9517 1.1431 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 2.3575 -7.4870 -1.7950 32 1 3.6093 -6.2093 -1.7960 33 1 2.8249 -9.6887 -0.7488 34 1 3.7611 -9.4290 -2.2402 35 1 4.6290 -11.2416 -0.9494 36 1 5.4881 -9.2990 1.5615 37 1 5.0026 -8.8199 3.9276 38 1 3.2955 -7.1458 4.5165 39 1 2.0698 -5.9598 2.7519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292521166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:18 Heat of formation + Delta-G solvation = -119.377168 kcal Electronic energy + Delta-G solvation = -23846.962817 eV Core-core repulsion = 20266.411807 eV Total energy + Delta-G solvation = -3580.551010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64354 -38.51794 -37.85192 -37.28577 -37.14053 -35.96770 -33.51681 -33.21371 -30.55809 -30.45877 -27.68459 -26.40255 -24.16629 -23.69454 -23.00105 -21.67592 -20.32289 -19.22990 -18.49780 -18.23021 -17.53948 -17.45421 -16.97671 -16.60334 -16.55512 -16.32571 -15.51859 -15.41297 -15.23279 -14.71999 -14.52340 -14.22700 -13.81827 -13.78260 -13.67413 -13.45308 -13.36464 -13.22341 -12.97399 -12.87286 -12.78081 -12.57897 -12.33152 -12.27336 -12.19926 -11.84497 -11.66855 -11.53130 -11.10844 -10.79805 -10.67906 -9.72270 -8.90761 -8.29413 -6.44041 -1.02562 0.44724 0.48077 1.39470 1.39996 1.41503 1.52855 2.35554 2.58457 2.80752 2.87071 3.04129 3.12725 3.32623 3.67837 3.86202 3.93539 3.99438 4.09652 4.23529 4.32995 4.42663 4.47041 4.53891 4.59952 4.63524 4.65197 4.75022 4.90552 5.09077 5.18159 5.18422 5.23875 5.35980 5.52272 5.63853 5.65746 5.69259 6.00674 6.13410 6.68721 6.95995 7.26416 8.82792 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.003730 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.595379 B = 7505.567153 C = 7870.140909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.580 4.580 11 S 2.613 3.387 12 O -0.976 6.976 13 O -0.976 6.976 14 N -0.941 5.941 15 C 0.105 3.895 16 C -0.047 4.047 17 H 0.117 0.883 18 C 0.092 3.908 19 O -0.580 6.580 20 C -0.132 4.132 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.090 4.090 24 C -0.183 4.183 25 C 0.138 3.862 26 H 0.269 0.731 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 -20.844 0.107 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.714 3.286 12 O -0.966 6.966 13 O -0.967 6.967 14 N -0.765 5.765 15 C -0.018 4.018 16 C -0.066 4.066 17 H 0.135 0.865 18 C 0.014 3.986 19 O -0.389 6.389 20 C -0.136 4.136 21 C -0.082 4.082 22 C -0.164 4.164 23 C -0.109 4.109 24 C -0.205 4.205 25 C 0.041 3.959 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.981 -20.313 0.232 23.584 hybrid contribution -0.195 1.042 -0.223 1.083 sum 11.786 -19.272 0.009 22.590 Atomic orbital electron populations 1.70093 1.08046 1.28460 1.50585 1.26107 0.95875 1.03854 0.94195 0.85297 0.78593 0.77539 0.78747 1.19396 1.20706 1.18288 1.21466 0.93943 0.90624 1.51970 0.90704 1.18840 0.93447 0.92712 0.96665 1.30324 1.12838 1.15649 1.12439 1.04988 0.74231 0.76166 0.73220 1.93514 1.71513 1.85567 1.46042 1.93499 1.71984 1.85365 1.45816 1.56199 1.55596 1.52871 1.11821 1.22226 0.96561 0.97411 0.85635 1.20710 1.00551 0.94724 0.90664 0.86504 1.22089 0.90528 0.87434 0.98557 1.86390 1.50201 1.22165 1.80098 1.20238 0.98553 0.98811 0.96022 1.20730 0.98292 0.97910 0.91248 1.21400 0.99173 0.99199 0.96676 1.21159 0.95077 0.95327 0.99301 1.21154 1.03812 1.04974 0.90567 1.18336 0.94998 0.95695 0.86835 0.92264 0.97070 0.97318 0.84418 0.83544 0.88625 0.87280 0.94203 0.90499 0.75171 0.83618 0.82694 0.83531 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.18 4.98 29.85 0.15 1.33 16 10 C -0.58 -22.72 6.12 71.98 0.44 -22.28 16 11 S 2.61 99.08 5.56 -56.49 -0.31 98.77 16 12 O -0.98 -40.97 17.56 -127.65 -2.24 -43.22 16 13 O -0.98 -42.38 15.25 -127.65 -1.95 -44.33 16 14 N -0.94 -28.15 3.40 -337.78 -1.15 -29.30 16 15 C 0.10 2.30 6.73 86.62 0.58 2.89 16 16 C -0.05 -0.89 3.32 -11.12 -0.04 -0.92 16 17 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.09 1.33 6.26 71.98 0.45 1.78 16 19 O -0.58 -7.62 12.60 -148.98 -1.88 -9.50 16 20 C -0.13 -3.15 5.51 -19.63 -0.11 -3.26 16 21 C -0.06 -1.30 9.59 22.25 0.21 -1.09 16 22 C -0.15 -2.83 10.06 22.28 0.22 -2.60 16 23 C -0.09 -2.12 10.02 22.19 0.22 -1.90 16 24 C -0.18 -5.60 9.38 22.52 0.21 -5.38 16 25 C 0.14 4.08 6.59 38.34 0.25 4.33 16 26 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 30 H 0.15 4.93 8.14 -2.39 -0.02 4.91 16 31 H 0.10 1.94 7.71 -2.39 -0.02 1.92 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.40 1.76 9.12 -74.06 -0.68 1.09 16 36 H 0.15 2.46 7.55 -2.91 -0.02 2.43 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.12 4.21 6.10 -2.91 -0.02 4.19 16 Total: -1.00 -77.54 339.41 -1.53 -79.06 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.39 Total: 16.15 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.30 Total: -56.60 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -0.86 Total: -85.57 kcal Atomic # 8 Polarization: -90.98 SS G_CDS: -6.07 Total: -97.04 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 99.08 SS G_CDS: -0.31 Total: 98.77 kcal Total: -77.54 -1.53 -79.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292521166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.312 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds