Wall clock time and date at job start Tue Mar 31 2020 09:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47010 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.47385 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.47091 * 150.00630 * 3 2 1 7 7 C 1.39930 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99394 * 162.64236 * 7 2 1 9 9 C 1.41429 * 120.00693 * 342.64703 * 7 2 1 10 10 C 1.40794 * 120.18092 * 154.92019 * 9 7 2 11 11 C 1.37713 * 120.03450 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41405 * 359.97438 * 11 10 9 13 13 C 1.39892 * 120.35521 * 359.76872 * 12 11 10 14 14 C 1.47870 * 120.02487 * 180.25805 * 13 12 11 15 15 N 1.31957 * 126.56655 * 359.94486 * 14 13 12 16 16 C 1.34935 * 105.51297 * 179.89371 * 15 14 13 17 17 C 1.48468 * 126.31704 * 180.13804 * 16 15 14 18 18 C 1.39264 * 119.69152 * 180.30255 * 17 16 15 19 19 C 1.38412 * 119.10296 * 180.02562 * 18 17 16 20 20 C 1.38957 * 118.47915 * 359.97438 * 19 18 17 21 21 F 1.35100 * 120.35182 * 179.97438 * 20 19 18 22 22 C 1.38582 * 119.29265 * 359.97438 * 20 19 18 23 23 N 1.31681 * 120.84975 * 359.72860 * 22 20 19 24 24 N 1.30817 * 107.37120 * 0.37112 * 16 15 14 25 25 O 1.21276 * 110.32941 * 359.76585 * 24 16 15 26 26 C 1.39016 * 119.95081 * 0.49033 * 13 12 11 27 27 H 0.97003 * 119.99485 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98288 * 359.97115 * 10 9 7 29 29 H 1.08005 * 119.78838 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82810 * 180.02562 * 12 11 10 31 31 H 1.07996 * 120.45184 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.75984 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.57766 * 180.02562 * 22 20 19 34 34 H 1.07997 * 120.19795 * 179.76641 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2796 9 6 1.3490 -2.4090 0.3642 10 6 1.8190 -3.6485 -0.1104 11 6 1.1755 -4.8123 0.2471 12 6 0.0660 -4.7740 1.0731 13 6 -0.4120 -3.5523 1.5586 14 6 -1.5948 -3.5203 2.4454 15 7 -2.2959 -4.5591 2.8586 16 6 -3.2688 -4.0492 3.6424 17 6 -4.3212 -4.8200 4.3513 18 6 -5.2661 -4.1486 5.1232 19 6 -6.2415 -4.8793 5.7793 20 6 -6.2395 -6.2619 5.6404 21 9 -7.1738 -7.0121 6.2645 22 6 -5.2688 -6.8630 4.8549 23 7 -4.3568 -6.1408 4.2380 24 7 -3.1166 -2.7500 3.6585 25 8 -2.1644 -2.4289 2.9796 26 6 0.2228 -2.3678 1.2029 27 1 -0.4849 0.8401 0.0004 28 1 2.6845 -3.6865 -0.7551 29 1 1.5396 -5.7610 -0.1189 30 1 -0.4311 -5.6926 1.3478 31 1 -5.2382 -3.0724 5.2087 32 1 -6.9877 -4.3860 6.3846 33 1 -5.2632 -7.9372 4.7435 34 1 -0.1451 -1.4221 1.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359002522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:22 Heat of formation + Delta-G solvation = 80.046696 kcal Electronic energy + Delta-G solvation = -23239.018780 eV Core-core repulsion = 19440.503932 eV Total energy + Delta-G solvation = -3798.514848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.081 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.35150 -45.03928 -40.33801 -37.77598 -35.47315 -33.98153 -33.04597 -32.77343 -30.92464 -29.85948 -29.22801 -25.59912 -25.04870 -24.47057 -23.39615 -22.45970 -20.88901 -20.42239 -18.19821 -17.87359 -17.66000 -17.55560 -17.06742 -16.19993 -16.15758 -15.44407 -14.84405 -14.63042 -14.44320 -14.23115 -13.97821 -13.71520 -13.50277 -12.91792 -12.73717 -12.65792 -12.08108 -12.00769 -11.60994 -11.38543 -11.18836 -10.94770 -10.71312 -10.58310 -10.35277 -10.15039 -9.95193 -9.92226 -9.82881 -9.30882 -9.00206 -7.65392 -7.64456 -6.91839 -4.53388 0.21114 0.72629 1.26483 2.26573 2.68333 2.99580 3.02110 3.06348 3.16298 3.17631 3.30938 3.49384 3.64697 3.83719 3.92451 4.34191 4.35084 4.46110 4.72522 4.79566 5.19641 5.38971 5.42711 5.46864 5.51016 5.96837 6.07166 6.15488 6.26368 6.37330 6.60437 6.82226 6.90317 7.07813 7.20219 7.44797 7.56459 7.69253 7.78703 7.98184 8.34487 8.48885 8.66349 8.69803 10.03489 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.002872 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.313189 B = 9748.322197 C =10769.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.101 3.899 10 C -0.197 4.197 11 C -0.098 4.098 12 C -0.183 4.183 13 C -0.036 4.036 14 C 0.271 3.729 15 N -0.467 5.467 16 C 0.203 3.797 17 C 0.203 3.797 18 C -0.108 4.108 19 C -0.107 4.107 20 C 0.054 3.946 21 F -0.127 7.127 22 C 0.083 3.917 23 N -0.418 5.418 24 N -0.382 5.382 25 O 0.089 5.911 26 C -0.111 4.111 27 H 0.285 0.715 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -5.598 8.580 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.098 3.902 10 C -0.217 4.217 11 C -0.116 4.116 12 C -0.204 4.204 13 C -0.038 4.038 14 C 0.057 3.943 15 N -0.199 5.199 16 C -0.068 4.068 17 C 0.065 3.935 18 C -0.130 4.130 19 C -0.134 4.134 20 C 0.032 3.968 21 F -0.106 7.106 22 C -0.078 4.078 23 N -0.127 5.127 24 N -0.091 5.091 25 O 0.027 5.973 26 C -0.133 4.133 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.532 -5.766 8.556 14.047 hybrid contribution -0.483 1.104 0.474 1.295 sum -10.015 -4.662 9.030 14.268 Atomic orbital electron populations 1.69765 1.07609 1.29835 1.34294 1.25943 0.94787 1.01571 0.92092 0.86274 0.80643 0.80351 0.79341 1.19395 1.19939 1.18333 1.19568 0.98134 0.90807 1.40175 0.89879 1.17476 0.90908 0.92606 0.89167 1.21234 1.03109 0.92688 1.04694 1.20492 0.95706 0.97157 0.98226 1.20370 1.00205 0.94925 1.04944 1.17206 0.91188 0.96251 0.99190 1.27077 0.95135 0.78887 0.93222 1.72386 1.05991 1.27620 1.13894 1.23111 0.96926 0.87493 0.99295 1.17950 0.91863 0.88812 0.94877 1.21984 0.93171 1.02451 0.95368 1.21595 0.99719 0.92020 1.00044 1.18982 0.90437 0.90028 0.97373 1.91538 1.62909 1.75878 1.80245 1.22986 0.89924 1.01391 0.93483 1.67593 1.21281 1.05993 1.17802 1.74773 1.05355 1.14692 1.14249 1.85400 1.30628 1.35545 1.45695 1.21585 0.97840 0.95446 0.98380 0.90396 0.88112 0.88104 0.87438 0.82720 0.82698 0.80721 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.14 10.97 55.55 0.61 -18.53 16 2 C 0.07 1.74 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 7 C -0.46 -11.14 9.05 -37.73 -0.34 -11.49 16 8 H 0.08 1.92 7.90 -52.48 -0.41 1.51 16 9 C 0.10 2.47 5.57 -106.87 -0.59 1.87 16 10 C -0.20 -4.37 9.78 -38.81 -0.38 -4.75 16 11 C -0.10 -2.01 10.01 -39.73 -0.40 -2.40 16 12 C -0.18 -3.93 9.71 -38.92 -0.38 -4.31 16 13 C -0.04 -0.80 5.87 -105.05 -0.62 -1.42 16 14 C 0.27 5.81 8.00 -13.79 -0.11 5.70 16 15 N -0.47 -9.71 11.24 -10.23 -0.12 -9.83 16 16 C 0.20 3.79 7.89 -156.31 -1.23 2.56 16 17 C 0.20 3.12 6.75 -82.93 -0.56 2.56 16 18 C -0.11 -1.26 9.73 -39.14 -0.38 -1.64 16 19 C -0.11 -0.99 10.15 -39.25 -0.40 -1.39 16 20 C 0.05 0.53 7.35 -39.19 -0.29 0.25 16 21 F -0.13 -1.20 17.28 2.25 0.04 -1.16 16 22 C 0.08 0.92 11.17 -17.49 -0.20 0.72 16 23 N -0.42 -6.24 10.28 -9.70 -0.10 -6.34 16 24 N -0.38 -7.25 11.81 31.19 0.37 -6.88 16 25 O 0.09 1.84 11.10 16.66 0.18 2.03 16 26 C -0.11 -2.67 8.36 -38.45 -0.32 -3.00 16 27 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 29 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.11 2.20 7.86 -52.48 -0.41 1.79 16 31 H 0.16 1.62 7.85 -52.49 -0.41 1.21 16 32 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.18 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.13 3.27 6.06 -52.49 -0.32 2.96 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -26.79 318.32 -7.91 -34.70 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -2.38 Total: 3.82 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -6.28 Total: -15.07 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.76 Total: -41.59 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.18 Total: 2.03 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.79 -7.91 -34.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359002522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.746 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds