Wall clock time and date at job start Tue Mar 31 2020 09:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47010 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.47385 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.47091 * 150.00630 * 3 2 1 7 7 C 1.39930 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99394 * 162.64236 * 7 2 1 9 9 C 1.41429 * 120.00693 * 342.64703 * 7 2 1 10 10 C 1.40794 * 120.18092 * 154.92019 * 9 7 2 11 11 C 1.37713 * 120.03450 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41405 * 359.97438 * 11 10 9 13 13 C 1.39892 * 120.35521 * 359.76872 * 12 11 10 14 14 C 1.47870 * 120.02487 * 180.25805 * 13 12 11 15 15 N 1.31957 * 126.56655 * 359.94486 * 14 13 12 16 16 C 1.34935 * 105.51297 * 179.89371 * 15 14 13 17 17 C 1.48468 * 126.31704 * 180.13804 * 16 15 14 18 18 C 1.39264 * 119.69152 * 180.30255 * 17 16 15 19 19 C 1.38412 * 119.10296 * 180.02562 * 18 17 16 20 20 C 1.38957 * 118.47915 * 359.97438 * 19 18 17 21 21 F 1.35100 * 120.35182 * 179.97438 * 20 19 18 22 22 C 1.38582 * 119.29265 * 359.97438 * 20 19 18 23 23 N 1.31681 * 120.84975 * 359.72860 * 22 20 19 24 24 N 1.30817 * 107.37120 * 0.37112 * 16 15 14 25 25 O 1.21276 * 110.32941 * 359.76585 * 24 16 15 26 26 C 1.39016 * 119.95081 * 0.49033 * 13 12 11 27 27 H 0.97003 * 119.99485 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98288 * 359.97115 * 10 9 7 29 29 H 1.08005 * 119.78838 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82810 * 180.02562 * 12 11 10 31 31 H 1.07996 * 120.45184 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.75984 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.57766 * 180.02562 * 22 20 19 34 34 H 1.07997 * 120.19795 * 179.76641 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2796 9 6 1.3490 -2.4090 0.3642 10 6 1.8190 -3.6485 -0.1104 11 6 1.1755 -4.8123 0.2471 12 6 0.0660 -4.7740 1.0731 13 6 -0.4120 -3.5523 1.5586 14 6 -1.5948 -3.5203 2.4454 15 7 -2.2959 -4.5591 2.8586 16 6 -3.2688 -4.0492 3.6424 17 6 -4.3212 -4.8200 4.3513 18 6 -5.2661 -4.1486 5.1232 19 6 -6.2415 -4.8793 5.7793 20 6 -6.2395 -6.2619 5.6404 21 9 -7.1738 -7.0121 6.2645 22 6 -5.2688 -6.8630 4.8549 23 7 -4.3568 -6.1408 4.2380 24 7 -3.1166 -2.7500 3.6585 25 8 -2.1644 -2.4289 2.9796 26 6 0.2228 -2.3678 1.2029 27 1 -0.4849 0.8401 0.0004 28 1 2.6845 -3.6865 -0.7551 29 1 1.5396 -5.7610 -0.1189 30 1 -0.4311 -5.6926 1.3478 31 1 -5.2382 -3.0724 5.2087 32 1 -6.9877 -4.3860 6.3846 33 1 -5.2632 -7.9372 4.7435 34 1 -0.1451 -1.4221 1.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359002522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:21 Heat of formation + Delta-G solvation = 65.429663 kcal Electronic energy + Delta-G solvation = -23239.652622 eV Core-core repulsion = 19440.503932 eV Total energy + Delta-G solvation = -3799.148690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.081 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.14619 -46.56722 -41.28353 -39.51786 -36.98703 -35.69892 -34.44843 -33.78793 -32.10703 -31.60712 -30.82086 -27.32461 -26.29908 -25.68204 -24.65863 -23.84472 -22.59206 -21.93826 -19.64410 -19.20356 -19.00065 -18.66541 -18.25712 -17.50111 -17.12509 -16.96284 -16.51917 -16.17222 -15.49964 -15.29325 -15.07875 -14.99711 -14.64468 -14.40930 -14.29633 -13.80392 -13.74363 -13.50523 -13.21768 -12.93723 -12.79084 -12.63739 -12.30008 -12.15745 -11.74299 -11.63603 -11.53826 -11.21143 -11.01539 -10.88342 -10.05261 -9.44041 -9.36456 -8.65998 -6.37187 -0.84945 -0.34539 -0.09787 0.84641 0.97570 1.40351 1.43779 1.55194 1.59780 1.63234 2.02267 2.22772 2.44688 2.60704 2.71882 2.81174 3.41564 3.60003 3.61457 3.63673 3.76674 4.02221 4.32238 4.44138 4.51954 4.58230 4.62112 4.72741 4.73839 4.89926 5.06562 5.15928 5.30846 5.33959 5.44797 5.80584 5.93945 6.01068 6.22636 6.49986 6.54616 6.87246 6.88747 6.93577 8.31333 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.002872 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.313189 B = 9748.322197 C =10769.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.087 0.913 9 C 0.074 3.926 10 C -0.202 4.202 11 C -0.091 4.091 12 C -0.183 4.183 13 C -0.041 4.041 14 C 0.261 3.739 15 N -0.479 5.479 16 C 0.211 3.789 17 C 0.162 3.838 18 C -0.099 4.099 19 C -0.091 4.091 20 C 0.071 3.929 21 F -0.118 7.118 22 C 0.082 3.918 23 N -0.451 5.451 24 N -0.384 5.384 25 O 0.070 5.930 26 C -0.134 4.134 27 H 0.290 0.710 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.119 0.881 31 H 0.164 0.836 32 H 0.195 0.805 33 H 0.202 0.798 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -6.524 9.626 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.105 0.895 9 C 0.072 3.928 10 C -0.223 4.223 11 C -0.109 4.109 12 C -0.204 4.204 13 C -0.043 4.043 14 C 0.046 3.954 15 N -0.212 5.212 16 C -0.061 4.061 17 C 0.026 3.974 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.049 3.951 21 F -0.097 7.097 22 C -0.079 4.079 23 N -0.161 5.161 24 N -0.095 5.095 25 O 0.013 5.987 26 C -0.156 4.156 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.182 0.818 32 H 0.212 0.788 33 H 0.218 0.782 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.667 -6.683 9.588 15.823 hybrid contribution -0.312 1.157 0.258 1.226 sum -10.980 -5.526 9.846 15.749 Atomic orbital electron populations 1.69834 1.09022 1.30872 1.35123 1.26751 0.95419 1.04605 0.91186 0.85228 0.79202 0.76024 0.79505 1.18666 1.19537 1.18009 1.19842 0.98541 0.91751 1.41642 0.89488 1.17839 0.91441 0.93859 0.89692 1.21503 1.03615 0.92478 1.04663 1.20867 0.94718 0.98280 0.97029 1.20632 1.00384 0.94794 1.04574 1.17359 0.91438 0.96328 0.99219 1.26965 0.95321 0.79454 0.93684 1.72369 1.06645 1.27665 1.14491 1.23772 0.96705 0.87521 0.98064 1.17970 0.92791 0.89375 0.97256 1.22076 0.92572 1.02992 0.94463 1.21950 0.99181 0.91633 0.98944 1.18974 0.89673 0.90347 0.96131 1.91573 1.62452 1.75778 1.79876 1.23391 0.89290 1.02360 0.92901 1.67473 1.23117 1.06128 1.19353 1.74736 1.05155 1.15036 1.14598 1.85386 1.31313 1.35704 1.46302 1.21445 0.98937 0.95362 0.99814 0.89950 0.86484 0.84271 0.86339 0.81829 0.78798 0.78157 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.38 10.97 21.82 0.24 -41.14 16 2 C 0.04 1.72 5.14 85.25 0.44 2.16 16 3 Si 0.98 36.33 29.59 68.60 2.03 38.36 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.49 -24.45 9.05 23.47 0.21 -24.24 16 8 H 0.09 4.11 7.90 -2.91 -0.02 4.09 16 9 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 10 C -0.20 -8.96 9.78 22.77 0.22 -8.73 16 11 C -0.09 -3.64 10.01 22.18 0.22 -3.42 16 12 C -0.18 -7.83 9.71 22.70 0.22 -7.61 16 13 C -0.04 -1.90 5.87 -20.14 -0.12 -2.02 16 14 C 0.26 11.61 8.00 87.31 0.70 12.31 16 15 N -0.48 -20.37 11.24 -302.36 -3.40 -23.76 16 16 C 0.21 8.02 7.89 137.38 1.08 9.10 16 17 C 0.16 4.90 6.75 42.00 0.28 5.19 16 18 C -0.10 -2.12 9.73 22.56 0.22 -1.90 16 19 C -0.09 -1.35 10.15 22.48 0.23 -1.12 16 20 C 0.07 1.16 7.35 22.52 0.17 1.33 16 21 F -0.12 -1.77 17.28 44.97 0.78 -0.99 16 22 C 0.08 1.62 11.17 84.80 0.95 2.57 16 23 N -0.45 -13.06 10.28 -184.61 -1.90 -14.96 16 24 N -0.38 -14.96 11.81 -57.81 -0.68 -15.65 16 25 O 0.07 3.04 11.10 69.69 0.77 3.81 16 26 C -0.13 -6.76 8.36 23.00 0.19 -6.57 16 27 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 28 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 29 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.12 4.77 7.86 -2.91 -0.02 4.75 16 31 H 0.16 3.15 7.85 -2.91 -0.02 3.12 16 32 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 34 H 0.11 6.08 6.06 -2.91 -0.02 6.06 16 Total: -1.00 -60.23 318.32 3.91 -56.32 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 1.17 Total: 17.36 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.90 Total: -19.35 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -5.74 Total: -95.51 kcal Atomic # 8 Polarization: 3.04 SS G_CDS: 0.77 Total: 3.81 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.78 Total: -0.99 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -60.23 3.91 -56.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359002522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.748 kcal (2) G-P(sol) polarization free energy of solvation -60.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds