Wall clock time and date at job start Tue Mar 31 2020 09:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99935 * 2 1 4 4 H 1.48500 * 109.46859 * 270.00303 * 3 2 1 5 5 H 1.48506 * 109.46841 * 29.99996 * 3 2 1 6 6 H 1.48491 * 109.47260 * 150.00095 * 3 2 1 7 7 C 1.37870 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00224 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00148 * 180.27129 * 7 2 1 10 10 C 1.52997 * 109.47751 * 179.72354 * 9 7 2 11 11 C 1.52994 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99938 * 174.76329 * 12 11 10 14 14 H 1.09003 * 108.62050 * 324.74584 * 13 12 11 15 15 C 1.51886 * 108.66524 * 82.67134 * 13 12 11 16 16 C 1.53528 * 108.96390 * 181.61024 * 15 13 12 17 17 S 1.81607 * 107.31420 * 287.42980 * 16 15 13 18 18 C 1.76462 * 102.63556 * 46.40154 * 17 16 15 19 19 C 1.39726 * 117.71598 * 167.34177 * 18 17 16 20 20 Cl 1.73595 * 119.70193 * 358.57238 * 19 18 17 21 21 C 1.37834 * 120.59928 * 178.54720 * 19 18 17 22 22 C 1.38345 * 119.49875 * 0.07797 * 21 19 18 23 23 C 1.37751 * 120.01853 * 0.36599 * 22 21 19 24 24 C 1.38120 * 122.30429 * 346.63666 * 18 17 16 25 25 H 0.97000 * 120.00425 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46998 * 299.73398 * 9 7 2 27 27 H 1.09008 * 109.46842 * 59.72368 * 9 7 2 28 28 H 1.08998 * 109.47297 * 300.00929 * 10 9 7 29 29 H 1.09009 * 109.46504 * 59.99759 * 10 9 7 30 30 H 1.09000 * 109.47330 * 299.99906 * 11 10 9 31 31 H 1.08994 * 109.47152 * 60.00292 * 11 10 9 32 32 H 1.00901 * 111.00063 * 298.71494 * 12 11 10 33 33 H 1.08993 * 109.55158 * 301.46108 * 15 13 12 34 34 H 1.09004 * 109.55131 * 61.76668 * 15 13 12 35 35 H 1.08993 * 109.88781 * 167.97830 * 16 15 13 36 36 H 1.09005 * 109.88913 * 46.87860 * 16 15 13 37 37 H 1.07998 * 120.24590 * 180.10568 * 21 19 18 38 38 H 1.07993 * 119.99199 * 180.38681 * 22 21 19 39 39 H 1.07997 * 119.45840 * 179.89482 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0056 10 6 4.0216 -2.6365 0.0106 11 6 5.5515 -2.6364 0.0176 12 7 6.0411 -4.0214 0.0217 13 6 7.5048 -4.0627 -0.0968 14 1 7.8244 -3.2487 -0.7475 15 6 8.1102 -3.8475 1.2795 16 6 9.6405 -3.8491 1.1572 17 16 10.1565 -5.5630 0.8500 18 6 9.0335 -6.0848 -0.4072 19 6 9.3164 -7.2781 -1.0768 20 17 10.7543 -8.1665 -0.6809 21 6 8.4638 -7.7565 -2.0484 22 6 7.3196 -7.0446 -2.3613 23 6 7.0431 -5.8632 -1.7092 24 6 7.8989 -5.3655 -0.7283 25 1 -0.4851 0.8400 0.0004 26 1 3.8785 -0.6819 -0.8838 27 1 3.8712 -0.6784 0.8962 28 1 3.6545 -3.1486 0.9000 29 1 3.6618 -3.1521 -0.8799 30 1 5.9189 -2.1243 -0.8717 31 1 5.9108 -2.1210 0.9082 32 1 5.7312 -4.5121 0.8472 33 1 7.7769 -2.8897 1.6789 34 1 7.7965 -4.6513 1.9457 35 1 10.0869 -3.4879 2.0836 36 1 9.9467 -3.2150 0.3251 37 1 8.6872 -8.6804 -2.5612 38 1 6.6429 -7.4153 -3.1169 39 1 6.1482 -5.3139 -1.9618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361109920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:12 Heat of formation + Delta-G solvation = -11.106214 kcal Electronic energy + Delta-G solvation = -20490.358918 eV Core-core repulsion = 17355.212053 eV Total energy + Delta-G solvation = -3135.146865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75838 -38.57189 -37.33967 -36.10577 -34.51408 -32.74344 -31.84398 -31.53279 -28.71290 -26.15583 -24.32904 -23.78844 -23.55383 -22.04162 -21.49071 -18.99243 -18.70292 -17.22388 -17.04179 -16.74896 -16.44140 -16.22703 -15.65737 -15.46337 -15.16239 -14.77226 -14.73251 -14.28038 -14.18725 -13.82071 -13.72079 -13.47500 -13.26155 -12.81065 -12.68905 -12.57315 -12.51585 -12.25326 -12.14008 -11.80342 -11.77206 -11.53229 -11.40949 -11.25634 -11.02235 -10.75131 -10.64695 -9.66599 -9.39517 -8.45048 -8.28134 -6.32417 0.07090 0.16542 0.48797 1.09553 1.37109 1.38925 1.41016 1.50688 2.37330 2.53466 3.06622 3.07472 3.47029 3.65104 3.88081 4.02432 4.11716 4.18763 4.23506 4.31961 4.41750 4.42870 4.58255 4.61111 4.69005 4.73219 4.79064 4.95589 4.97059 4.99649 5.07063 5.14643 5.35789 5.48399 5.56629 5.64344 5.68642 5.79905 6.02737 6.30609 6.38022 6.76777 7.32331 8.88981 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002718 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.315607 B =10297.433638 C =11081.508946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.533 4.533 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.089 4.089 11 C 0.071 3.929 12 N -0.681 5.681 13 C 0.128 3.872 14 H 0.093 0.907 15 C -0.148 4.148 16 C -0.101 4.101 17 S -0.121 6.121 18 C -0.082 4.082 19 C -0.045 4.045 20 Cl -0.061 7.061 21 C -0.096 4.096 22 C -0.117 4.117 23 C -0.080 4.080 24 C -0.076 4.076 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.347 0.653 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.097 -12.957 -1.039 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.127 4.127 11 C -0.058 4.058 12 N -0.310 5.310 13 C 0.018 3.982 14 H 0.111 0.889 15 C -0.188 4.188 16 C -0.249 4.249 17 S 0.122 5.878 18 C -0.196 4.196 19 C -0.077 4.077 20 Cl -0.032 7.032 21 C -0.116 4.116 22 C -0.137 4.137 23 C -0.100 4.100 24 C -0.083 4.083 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.166 0.834 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.118 0.882 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 25.923 -13.533 -1.043 29.262 hybrid contribution -1.087 1.446 0.291 1.833 sum 24.836 -12.087 -0.753 27.631 Atomic orbital electron populations 1.70085 1.08457 1.28145 1.52892 1.26092 0.95639 1.03766 0.94186 0.85599 0.79547 0.77917 0.79197 1.19184 1.21261 1.16565 1.21547 0.92477 0.92938 1.50111 0.95328 1.19491 0.93562 0.95220 0.96526 1.21234 0.94043 0.96660 1.00798 1.21944 0.94518 0.88427 1.00862 1.60481 1.08302 1.15468 1.46788 1.20057 0.88316 0.94126 0.95743 0.88936 1.22319 0.94200 1.04468 0.97809 1.23870 0.98654 0.94815 1.07580 1.85785 1.42389 1.15447 1.44171 1.21370 0.99214 0.97689 1.01361 1.20715 0.91907 0.94558 1.00556 1.98357 1.37236 1.74211 1.93352 1.21242 0.93603 1.00943 0.95786 1.21401 0.96984 0.94802 1.00526 1.21598 0.98865 0.95829 0.93686 1.19578 0.93211 0.96856 0.98635 0.92574 0.96230 0.96126 0.93621 0.93216 0.90844 0.94241 0.83409 0.88611 0.90458 0.85033 0.88157 0.82674 0.82654 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.44 0.30 -59.85 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.95 43.55 27.47 68.60 1.88 45.43 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 7 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.23 5.46 30.59 0.17 -3.06 16 11 C 0.07 1.87 5.46 86.30 0.47 2.34 16 12 N -0.68 -15.22 4.82 -498.45 -2.40 -17.62 16 13 C 0.13 2.45 2.24 43.60 0.10 2.55 16 14 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 15 C -0.15 -2.36 5.02 30.40 0.15 -2.21 16 16 C -0.10 -1.44 6.53 72.16 0.47 -0.97 16 17 S -0.12 -2.35 20.69 -56.49 -1.17 -3.52 16 18 C -0.08 -1.78 6.05 22.60 0.14 -1.64 16 19 C -0.05 -0.94 6.33 22.53 0.14 -0.80 16 20 Cl -0.06 -1.20 27.57 -2.72 -0.07 -1.28 16 21 C -0.10 -1.68 9.83 22.20 0.22 -1.46 16 22 C -0.12 -2.03 10.03 22.18 0.22 -1.81 16 23 C -0.08 -1.64 9.12 22.43 0.20 -1.44 16 24 C -0.08 -1.60 5.64 -19.83 -0.11 -1.71 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 27 H 0.02 0.89 7.19 -2.38 -0.02 0.87 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 30 H 0.07 1.89 7.90 -2.39 -0.02 1.87 16 31 H 0.04 0.96 7.32 -2.39 -0.02 0.95 16 32 H 0.35 7.63 8.53 -89.69 -0.76 6.87 16 33 H 0.10 1.41 7.28 -2.39 -0.02 1.39 16 34 H 0.08 1.34 8.02 -2.39 -0.02 1.32 16 35 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.33 8.07 -2.38 -0.02 1.31 16 37 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.14 3.07 7.23 -2.91 -0.02 3.05 16 Total: -1.00 -65.98 339.75 1.77 -64.21 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.23 Total: 13.04 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 3.00 Total: -40.42 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.10 Total: -77.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -1.17 Total: -3.52 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.28 kcal Total: -65.98 1.77 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361109920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.105 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds