Wall clock time and date at job start Tue Mar 31 2020 10:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47206 * 299.99153 * 3 2 1 6 6 H 1.48494 * 109.47467 * 59.99677 * 3 2 1 7 7 C 1.37879 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52359 * 60.08197 * 9 7 2 11 11 C 1.53038 * 109.49839 * 180.15908 * 9 7 2 12 12 C 1.53037 * 109.53754 * 181.31524 * 11 9 7 13 13 C 1.53617 * 109.24429 * 298.51224 * 12 11 9 14 14 N 1.46926 * 108.54284 * 54.85825 * 13 12 11 15 15 C 1.34773 * 120.63527 * 126.36969 * 14 13 12 16 16 O 1.21573 * 120.00522 * 185.44759 * 15 14 13 17 17 C 1.47656 * 119.99757 * 5.44779 * 15 14 13 18 18 C 1.39691 * 120.13015 * 54.06886 * 17 15 14 19 19 C 1.37772 * 119.89149 * 179.97438 * 18 17 15 20 20 C 1.38715 * 120.15895 * 0.02562 * 19 18 17 21 21 F 1.35107 * 119.87123 * 180.02562 * 20 19 18 22 22 C 1.38562 * 120.26378 * 359.97438 * 20 19 18 23 23 C 1.38033 * 120.10220 * 0.02562 * 22 20 19 24 24 Cl 1.73596 * 120.08131 * 179.72018 * 23 22 20 25 25 C 1.46929 * 118.73497 * 306.09150 * 14 13 12 26 26 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46309 * 301.34130 * 11 9 7 28 28 H 1.09006 * 109.45983 * 61.31092 * 11 9 7 29 29 H 1.08998 * 109.49658 * 58.59356 * 12 11 9 30 30 H 1.09005 * 109.49812 * 178.65471 * 12 11 9 31 31 H 1.09000 * 109.74144 * 295.11877 * 13 12 11 32 32 H 1.09007 * 109.66508 * 174.54742 * 13 12 11 33 33 H 1.08004 * 120.05279 * 359.95721 * 18 17 15 34 34 H 1.08011 * 119.92266 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.95278 * 180.02562 * 22 20 19 36 36 H 1.09006 * 109.58170 * 173.64999 * 25 14 13 37 37 H 1.09002 * 109.58937 * 294.06931 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5587 -0.8901 11 6 2.2449 -3.6629 0.0052 12 6 1.4811 -4.9885 -0.0279 13 6 0.6028 -5.0983 1.2276 14 7 -0.2565 -3.9089 1.3022 15 6 -1.5932 -4.0337 1.4212 16 8 -2.3018 -3.0467 1.3823 17 6 -2.1970 -5.3695 1.5987 18 6 -1.7616 -6.2042 2.6307 19 6 -2.3287 -7.4494 2.7922 20 6 -3.3303 -7.8758 1.9324 21 9 -3.8828 -9.0978 2.0964 22 6 -3.7672 -7.0531 0.9066 23 6 -3.2065 -5.8035 0.7349 24 17 -3.7492 -4.7761 -0.5549 25 6 0.3696 -2.5807 1.2508 26 1 -0.4851 0.8400 -0.0004 27 1 2.8897 -3.5933 -0.8709 28 1 2.8534 -3.6171 0.9084 29 1 0.8534 -5.0246 -0.9183 30 1 2.1898 -5.8164 -0.0487 31 1 1.2338 -5.1495 2.1150 32 1 -0.0165 -5.9932 1.1650 33 1 -0.9814 -5.8742 3.3007 34 1 -1.9922 -8.0954 3.5897 35 1 -4.5476 -7.3900 0.2404 36 1 -0.4036 -1.8139 1.2035 37 1 0.9819 -2.4307 2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397813356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:23 Heat of formation + Delta-G solvation = -64.108511 kcal Electronic energy + Delta-G solvation = -23623.800798 eV Core-core repulsion = 19920.142406 eV Total energy + Delta-G solvation = -3703.658393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.23465 -40.19732 -38.36784 -36.64744 -36.43103 -33.46113 -31.94531 -31.25975 -30.80359 -29.63488 -25.27828 -25.02539 -23.37416 -22.99093 -21.84021 -20.14280 -18.74798 -17.95838 -17.25941 -16.76459 -16.17061 -15.95899 -15.50662 -15.03067 -14.61874 -14.35409 -14.24061 -13.98901 -13.71491 -13.52097 -13.18728 -12.95716 -12.66183 -12.53610 -12.15996 -11.87096 -11.57247 -11.46861 -11.02021 -10.96197 -10.90826 -10.51403 -10.41883 -10.25615 -9.91541 -9.46602 -9.24382 -9.14480 -8.93607 -8.81967 -8.45057 -7.79979 -6.00359 -4.09525 0.56349 0.78044 1.98344 2.88726 3.27134 3.31926 3.38218 3.40838 3.64351 3.91277 4.41067 4.41981 4.59550 4.63735 4.92817 5.15191 5.26727 5.30077 5.45803 5.51085 5.57563 5.64312 5.74838 5.88185 5.94687 6.14580 6.28184 6.36873 6.57944 6.63789 6.81995 6.95212 7.09786 7.22040 7.61826 7.85278 7.97050 8.16857 8.36781 8.73410 8.94911 9.56393 11.04705 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.004052 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.322206 B = 6908.937326 C = 7510.037824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.105 3.895 14 N -0.596 5.596 15 C 0.546 3.454 16 O -0.510 6.510 17 C -0.115 4.115 18 C -0.051 4.051 19 C -0.154 4.154 20 C 0.121 3.879 21 F -0.132 7.132 22 C -0.153 4.153 23 C 0.026 3.974 24 Cl -0.028 7.028 25 C 0.113 3.887 26 H 0.263 0.737 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -16.983 4.270 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.019 4.019 14 N -0.329 5.329 15 C 0.331 3.669 16 O -0.386 6.386 17 C -0.120 4.120 18 C -0.070 4.070 19 C -0.173 4.173 20 C 0.101 3.899 21 F -0.111 7.111 22 C -0.172 4.172 23 C -0.002 4.002 24 Cl 0.002 6.998 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.706 -16.240 4.132 17.406 hybrid contribution 0.320 0.625 -0.089 0.708 sum -4.386 -15.615 4.043 16.716 Atomic orbital electron populations 1.69892 1.05702 1.26748 1.49273 1.25051 0.94866 0.99239 0.94833 0.86553 0.80053 0.83862 0.77643 1.19799 1.21018 1.20982 1.21107 0.92927 0.90072 1.51865 0.92309 1.18968 0.92600 0.92319 0.94045 0.95210 1.21631 0.98548 0.94028 1.00617 1.22012 0.98567 0.99146 0.97409 1.21853 0.93469 0.87873 0.98692 1.48456 1.04721 1.09279 1.70414 1.17957 0.82930 0.87368 0.78638 1.90861 1.60442 1.38081 1.49194 1.20241 0.97714 0.96802 0.97199 1.21152 0.98128 0.91743 0.95964 1.21139 0.97536 0.97799 1.00845 1.17594 0.94821 0.81090 0.96365 1.91531 1.84182 1.40439 1.94939 1.20910 1.03217 0.93124 0.99982 1.20669 0.95392 0.91831 0.92270 1.98447 1.88480 1.66333 1.46571 1.22361 0.98749 0.80872 0.98701 0.92678 0.92969 0.93148 0.92082 0.92186 0.91787 0.91109 0.83444 0.83610 0.83252 0.85756 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 11.39 55.43 0.63 -24.73 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.87 8.56 -34.44 -0.29 -14.16 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.13 5.10 -26.69 -0.14 -2.27 16 12 C -0.13 -2.09 6.10 -26.39 -0.16 -2.25 16 13 C 0.10 1.55 5.60 -3.49 -0.02 1.53 16 14 N -0.60 -11.48 2.97 -173.68 -0.52 -11.99 16 15 C 0.55 10.69 6.58 -12.42 -0.08 10.61 16 16 O -0.51 -12.20 15.58 5.30 0.08 -12.12 16 17 C -0.12 -1.74 4.61 -104.93 -0.48 -2.22 16 18 C -0.05 -0.58 7.77 -39.21 -0.30 -0.88 16 19 C -0.15 -1.46 10.01 -39.58 -0.40 -1.86 16 20 C 0.12 1.27 7.30 -39.29 -0.29 0.98 16 21 F -0.13 -1.37 17.26 2.25 0.04 -1.33 16 22 C -0.15 -1.74 9.79 -39.54 -0.39 -2.13 16 23 C 0.03 0.38 6.34 -39.08 -0.25 0.13 16 24 Cl -0.03 -0.45 27.37 -51.86 -1.42 -1.87 16 25 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.89 5.37 -51.92 -0.28 0.61 16 33 H 0.15 1.43 7.75 -52.48 -0.41 1.02 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 3.43 5.11 -51.93 -0.27 3.17 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -30.56 323.55 -8.74 -39.30 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.30 Total: -0.63 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.12 Total: -7.52 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.12 Total: -36.72 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.42 Total: -1.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.56 -8.74 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397813356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.804 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds