Wall clock time and date at job start Tue Mar 31 2020 10:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47206 * 299.99153 * 3 2 1 6 6 H 1.48494 * 109.47467 * 59.99677 * 3 2 1 7 7 C 1.37879 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52359 * 60.08197 * 9 7 2 11 11 C 1.53038 * 109.49839 * 180.15908 * 9 7 2 12 12 C 1.53037 * 109.53754 * 181.31524 * 11 9 7 13 13 C 1.53617 * 109.24429 * 298.51224 * 12 11 9 14 14 N 1.46926 * 108.54284 * 54.85825 * 13 12 11 15 15 C 1.34773 * 120.63527 * 126.36969 * 14 13 12 16 16 O 1.21573 * 120.00522 * 185.44759 * 15 14 13 17 17 C 1.47656 * 119.99757 * 5.44779 * 15 14 13 18 18 C 1.39691 * 120.13015 * 54.06886 * 17 15 14 19 19 C 1.37772 * 119.89149 * 179.97438 * 18 17 15 20 20 C 1.38715 * 120.15895 * 0.02562 * 19 18 17 21 21 F 1.35107 * 119.87123 * 180.02562 * 20 19 18 22 22 C 1.38562 * 120.26378 * 359.97438 * 20 19 18 23 23 C 1.38033 * 120.10220 * 0.02562 * 22 20 19 24 24 Cl 1.73596 * 120.08131 * 179.72018 * 23 22 20 25 25 C 1.46929 * 118.73497 * 306.09150 * 14 13 12 26 26 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46309 * 301.34130 * 11 9 7 28 28 H 1.09006 * 109.45983 * 61.31092 * 11 9 7 29 29 H 1.08998 * 109.49658 * 58.59356 * 12 11 9 30 30 H 1.09005 * 109.49812 * 178.65471 * 12 11 9 31 31 H 1.09000 * 109.74144 * 295.11877 * 13 12 11 32 32 H 1.09007 * 109.66508 * 174.54742 * 13 12 11 33 33 H 1.08004 * 120.05279 * 359.95721 * 18 17 15 34 34 H 1.08011 * 119.92266 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.95278 * 180.02562 * 22 20 19 36 36 H 1.09006 * 109.58170 * 173.64999 * 25 14 13 37 37 H 1.09002 * 109.58937 * 294.06931 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5587 -0.8901 11 6 2.2449 -3.6629 0.0052 12 6 1.4811 -4.9885 -0.0279 13 6 0.6028 -5.0983 1.2276 14 7 -0.2565 -3.9089 1.3022 15 6 -1.5932 -4.0337 1.4212 16 8 -2.3018 -3.0467 1.3823 17 6 -2.1970 -5.3695 1.5987 18 6 -1.7616 -6.2042 2.6307 19 6 -2.3287 -7.4494 2.7922 20 6 -3.3303 -7.8758 1.9324 21 9 -3.8828 -9.0978 2.0964 22 6 -3.7672 -7.0531 0.9066 23 6 -3.2065 -5.8035 0.7349 24 17 -3.7492 -4.7761 -0.5549 25 6 0.3696 -2.5807 1.2508 26 1 -0.4851 0.8400 -0.0004 27 1 2.8897 -3.5933 -0.8709 28 1 2.8534 -3.6171 0.9084 29 1 0.8534 -5.0246 -0.9183 30 1 2.1898 -5.8164 -0.0487 31 1 1.2338 -5.1495 2.1150 32 1 -0.0165 -5.9932 1.1650 33 1 -0.9814 -5.8742 3.3007 34 1 -1.9922 -8.0954 3.5897 35 1 -4.5476 -7.3900 0.2404 36 1 -0.4036 -1.8139 1.2035 37 1 0.9819 -2.4307 2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397813356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:22 Heat of formation + Delta-G solvation = -81.573754 kcal Electronic energy + Delta-G solvation = -23624.558148 eV Core-core repulsion = 19920.142406 eV Total energy + Delta-G solvation = -3704.415743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.06299 -41.49505 -39.59306 -38.21412 -37.57431 -35.30748 -33.56502 -32.28875 -31.93652 -31.23097 -27.12696 -26.50805 -24.34630 -24.15705 -23.39933 -21.62712 -20.19233 -18.93220 -18.69322 -18.06307 -17.77078 -17.07780 -16.73339 -16.48442 -15.99371 -15.80176 -15.37909 -15.25371 -14.96035 -14.69761 -14.47329 -14.29818 -14.27780 -13.95766 -13.68957 -13.43853 -12.91015 -12.75648 -12.47297 -12.41722 -12.27719 -12.19797 -12.12512 -11.80582 -11.61426 -11.14023 -10.94700 -10.73252 -10.51946 -10.15377 -9.85464 -9.40548 -8.09482 -6.26844 -0.42680 -0.10532 0.91185 1.40014 1.42035 1.53675 1.62233 2.06726 2.35467 2.43305 3.02404 3.18515 3.41848 3.55124 3.84122 3.99179 4.06690 4.17839 4.18653 4.34046 4.60709 4.62330 4.73357 4.75989 4.80747 4.86398 4.90003 4.99410 5.10819 5.26245 5.28348 5.37032 5.53248 5.55962 5.64540 5.91906 6.01853 6.33952 6.60772 6.86516 7.24181 7.43716 8.93722 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.004052 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.322206 B = 6908.937326 C = 7510.037824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.018 1.018 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.101 3.899 14 N -0.599 5.599 15 C 0.542 3.458 16 O -0.570 6.570 17 C -0.137 4.137 18 C -0.041 4.041 19 C -0.130 4.130 20 C 0.131 3.869 21 F -0.126 7.126 22 C -0.148 4.148 23 C 0.011 3.989 24 Cl -0.060 7.060 25 C 0.126 3.874 26 H 0.259 0.741 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.170 0.830 34 H 0.188 0.812 35 H 0.166 0.834 36 H 0.077 0.923 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 -20.348 6.027 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.021 4.021 14 N -0.331 5.331 15 C 0.330 3.670 16 O -0.449 6.449 17 C -0.141 4.141 18 C -0.060 4.060 19 C -0.148 4.148 20 C 0.111 3.889 21 F -0.105 7.105 22 C -0.167 4.167 23 C -0.017 4.017 24 Cl -0.031 7.031 25 C 0.005 3.995 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.187 0.813 34 H 0.205 0.795 35 H 0.183 0.817 36 H 0.095 0.905 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.152 -19.661 5.889 20.764 hybrid contribution -0.175 1.552 -0.614 1.679 sum -3.327 -18.108 5.274 19.152 Atomic orbital electron populations 1.70103 1.07418 1.27105 1.50700 1.25877 0.95493 1.02855 0.94656 0.85535 0.79364 0.79594 0.77351 1.18327 1.21155 1.20803 1.21545 0.93297 0.91426 1.50958 0.91897 1.18904 0.93094 0.93875 0.92293 1.00027 1.21514 0.97608 0.93990 1.01101 1.21988 0.98952 0.98388 0.97222 1.22217 0.93517 0.86872 0.99463 1.48443 1.05433 1.09128 1.70046 1.18649 0.82580 0.88709 0.77081 1.90821 1.61721 1.40679 1.51694 1.19931 0.99145 0.95232 0.99812 1.21355 0.98390 0.91645 0.94603 1.21489 0.95699 0.96982 1.00647 1.17659 0.94554 0.80882 0.95783 1.91562 1.84094 1.40006 1.94790 1.21020 1.03158 0.91940 1.00580 1.20750 0.96229 0.92610 0.92086 1.98434 1.88880 1.67601 1.48164 1.21742 0.97205 0.82453 0.98149 0.93229 0.93211 0.91860 0.93847 0.87649 0.88754 0.88106 0.81296 0.79524 0.81666 0.90493 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.89 11.39 21.45 0.24 -55.64 16 2 C 0.01 0.59 5.30 84.66 0.45 1.04 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.53 -29.20 8.56 25.60 0.22 -28.98 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 1.88 2.25 -11.46 -0.03 1.86 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.10 -3.93 5.10 30.62 0.16 -3.78 16 12 C -0.13 -3.69 6.10 30.81 0.19 -3.51 16 13 C 0.10 2.70 5.60 86.51 0.48 3.18 16 14 N -0.60 -23.20 2.97 -821.68 -2.44 -25.64 16 15 C 0.54 21.77 6.58 86.73 0.57 22.34 16 16 O -0.57 -29.10 15.58 -3.95 -0.06 -29.17 16 17 C -0.14 -3.97 4.61 -20.07 -0.09 -4.07 16 18 C -0.04 -0.78 7.77 22.51 0.17 -0.60 16 19 C -0.13 -1.76 10.01 22.27 0.22 -1.54 16 20 C 0.13 2.20 7.30 22.46 0.16 2.36 16 21 F -0.13 -2.05 17.26 44.97 0.78 -1.27 16 22 C -0.15 -3.02 9.79 22.30 0.22 -2.80 16 23 C 0.01 0.31 6.34 22.59 0.14 0.45 16 24 Cl -0.06 -2.02 27.37 -2.72 -0.07 -2.10 16 25 C 0.13 6.17 5.41 86.36 0.47 6.63 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 2.14 5.37 -2.38 -0.01 2.12 16 33 H 0.17 2.46 7.75 -2.91 -0.02 2.44 16 34 H 0.19 1.13 8.06 -2.90 -0.02 1.11 16 35 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.08 4.55 5.11 -2.38 -0.01 4.54 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -73.77 323.55 4.91 -68.86 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.10 Total: 6.09 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.34 Total: -7.40 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.19 Total: -81.28 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.17 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.10 kcal Total: -73.77 4.91 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397813356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.711 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds