Wall clock time and date at job start Tue Mar 31 2020 10:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48502 * 109.47350 * 269.99782 * 3 2 1 5 5 H 1.48501 * 109.47193 * 29.99536 * 3 2 1 6 6 H 1.48501 * 109.47022 * 149.99615 * 3 2 1 7 7 C 1.37871 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00523 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99869 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 H 1.09002 * 110.73258 * 26.67749 * 15 14 11 17 17 C 1.54350 * 110.82485 * 263.26685 * 15 14 11 18 18 C 1.51377 * 105.17081 * 268.11035 * 17 15 14 19 19 C 1.38547 * 130.36458 * 162.84099 * 18 17 15 20 20 C 1.38125 * 120.33750 * 179.97438 * 19 18 17 21 21 C 1.38163 * 119.99730 * 359.97438 * 20 19 18 22 22 C 1.38605 * 119.87005 * 0.02562 * 21 20 19 23 23 O 1.35904 * 119.94770 * 179.97438 * 22 21 20 24 24 C 1.38132 * 109.76106 * 342.82078 * 18 17 15 25 25 C 1.51367 * 109.78332 * 359.97438 * 24 18 17 26 26 H 0.97005 * 119.99955 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.08999 * 110.30058 * 27.03363 * 17 15 14 33 33 H 1.08991 * 110.30438 * 149.18537 * 17 15 14 34 34 H 1.08003 * 119.83064 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.00369 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.06296 * 180.02562 * 21 20 19 37 37 H 0.96699 * 113.99945 * 270.02401 * 23 22 21 38 38 H 1.08990 * 110.30396 * 258.26483 * 25 24 18 39 39 H 1.09004 * 110.29869 * 136.10878 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6365 0.0022 12 8 6.3342 -2.1451 1.2389 13 8 6.3342 -2.1470 -1.2351 14 7 6.2488 -4.2401 0.0042 15 6 5.9178 -5.0832 -1.1472 16 1 5.8519 -4.4858 -2.0566 17 6 4.6043 -5.8559 -0.9020 18 6 5.0287 -7.1757 -0.2941 19 6 4.2941 -8.1181 0.4071 20 6 4.8999 -9.2678 0.8752 21 6 6.2451 -9.4827 0.6444 22 6 6.9841 -8.5427 -0.0567 23 8 8.3074 -8.7524 -0.2841 24 6 6.3739 -7.3859 -0.5268 25 6 6.9468 -6.2226 -1.3076 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8753 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8876 30 1 3.6579 -3.1498 0.8924 31 1 6.7136 -4.6202 0.7660 32 1 3.9668 -5.3076 -0.2084 33 1 4.0827 -6.0238 -1.8441 34 1 3.2423 -7.9530 0.5887 35 1 4.3221 -9.9990 1.4208 36 1 6.7198 -10.3815 1.0095 37 1 8.8856 -8.4022 0.4073 38 1 7.0556 -6.4895 -2.3587 39 1 7.9088 -5.9244 -0.8906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428402134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:47 Heat of formation + Delta-G solvation = -97.882626 kcal Electronic energy + Delta-G solvation = -23477.529905 eV Core-core repulsion = 19897.910968 eV Total energy + Delta-G solvation = -3579.618937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70358 -37.90714 -36.76209 -36.23891 -35.61060 -33.98883 -32.69855 -31.52855 -30.55560 -28.21114 -27.47651 -25.96966 -22.70237 -21.58712 -21.24876 -21.03232 -19.20131 -18.23455 -17.72218 -16.97838 -16.67564 -16.32166 -15.57636 -15.56743 -15.33532 -15.05515 -14.36030 -14.24875 -13.82180 -13.68143 -13.38935 -13.25919 -12.82281 -12.42647 -12.27984 -12.01904 -11.90985 -11.77040 -11.73714 -11.55763 -11.44403 -11.32593 -11.27815 -11.17333 -10.76649 -10.47612 -10.20287 -9.88086 -9.53654 -9.25300 -8.82160 -8.77576 -8.68302 -6.18662 -4.20063 0.61674 1.00399 1.06183 2.94744 3.25083 3.32687 3.34816 3.36665 3.96156 4.04953 4.08616 4.26955 4.34042 4.53724 4.69846 4.77665 4.87596 4.99344 5.13014 5.14616 5.23436 5.26170 5.45322 5.47636 5.52969 5.56681 5.62776 5.73222 5.86635 6.02041 6.13235 6.19280 6.25365 6.34299 6.56816 6.78676 6.89420 6.98761 7.38266 7.52420 8.34027 8.82191 9.41090 10.93649 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.003549 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.563283 B = 7887.867692 C = 8732.005454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.584 4.584 11 S 2.589 3.411 12 O -0.966 6.966 13 O -0.965 6.965 14 N -1.115 6.115 15 C 0.146 3.854 16 H 0.114 0.886 17 C -0.113 4.113 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.149 4.149 22 C 0.115 3.885 23 O -0.499 6.499 24 C -0.124 4.124 25 C -0.076 4.076 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.413 0.587 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.388 0.612 38 H 0.095 0.905 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.043 -18.409 0.143 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.717 4.717 11 S 2.686 3.314 12 O -0.957 6.957 13 O -0.955 6.955 14 N -0.871 5.871 15 C 0.038 3.962 16 H 0.132 0.868 17 C -0.152 4.152 18 C -0.070 4.070 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.168 4.168 22 C 0.071 3.929 23 O -0.309 6.309 24 C -0.125 4.125 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.247 0.753 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.114 0.886 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.255 -17.763 -0.537 22.170 hybrid contribution 0.032 0.359 0.847 0.921 sum 13.287 -17.403 0.310 21.898 Atomic orbital electron populations 1.69880 1.06212 1.27270 1.49967 1.24981 0.94814 0.99168 0.94129 0.86931 0.80700 0.83716 0.79131 1.19661 1.20774 1.18627 1.20835 0.87779 0.94892 1.52308 0.90394 1.19413 0.99931 0.87410 0.97885 1.30371 1.21095 1.09277 1.10925 1.05651 0.79144 0.72380 0.74233 1.93566 1.79199 1.77740 1.45159 1.93553 1.78409 1.77971 1.45596 1.55791 1.74431 1.29738 1.27126 1.21449 0.93517 0.92053 0.89144 0.86797 1.21874 0.98434 0.92693 1.02198 1.20470 0.93481 0.96094 0.96979 1.20736 1.00289 0.93670 0.98602 1.20928 0.94272 0.97288 0.99665 1.21290 0.95057 0.99971 1.00475 1.18047 0.84138 0.92666 0.98033 1.84817 1.14146 1.81903 1.50074 1.20878 0.95528 0.95350 1.00754 1.21211 0.98813 0.90906 1.00522 0.92371 0.94953 0.95333 0.85585 0.85434 0.75327 0.88885 0.88280 0.85622 0.85426 0.85419 0.75633 0.88635 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.07 5.15 37.16 0.19 -9.88 16 11 S 2.59 41.67 5.45 -107.50 -0.59 41.08 16 12 O -0.97 -18.45 18.08 -57.54 -1.04 -19.49 16 13 O -0.97 -18.04 17.43 -57.54 -1.00 -19.04 16 14 N -1.11 -12.97 5.45 -3.68 -0.02 -12.99 16 15 C 0.15 1.51 3.64 -66.51 -0.24 1.26 16 16 H 0.11 1.14 7.57 -51.93 -0.39 0.75 16 17 C -0.11 -1.12 6.37 -26.84 -0.17 -1.29 16 18 C -0.07 -0.72 6.14 -104.21 -0.64 -1.36 16 19 C -0.11 -1.10 10.04 -39.51 -0.40 -1.50 16 20 C -0.10 -0.89 10.04 -39.65 -0.40 -1.29 16 21 C -0.15 -1.33 9.98 -39.47 -0.39 -1.73 16 22 C 0.12 1.13 6.70 -39.17 -0.26 0.87 16 23 O -0.50 -4.36 13.45 -19.44 -0.26 -4.62 16 24 C -0.12 -1.26 6.11 -104.06 -0.64 -1.89 16 25 C -0.08 -0.70 6.35 -26.84 -0.17 -0.87 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 28 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 29 H 0.13 1.91 7.76 -51.92 -0.40 1.51 16 30 H 0.13 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.41 4.17 8.79 -34.47 -0.30 3.86 16 32 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.39 1.69 9.06 45.56 0.41 2.10 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -35.83 339.57 -9.70 -45.53 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.35 Total: 4.28 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -3.66 Total: -30.48 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.75 Total: -38.91 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -2.30 Total: -43.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 41.67 SS G_CDS: -0.59 Total: 41.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.83 -9.70 -45.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428402134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.351 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds