Wall clock time and date at job start Tue Mar 31 2020 10:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48502 * 109.47350 * 269.99782 * 3 2 1 5 5 H 1.48501 * 109.47193 * 29.99536 * 3 2 1 6 6 H 1.48501 * 109.47022 * 149.99615 * 3 2 1 7 7 C 1.37871 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00523 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99869 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 H 1.09002 * 110.73258 * 26.67749 * 15 14 11 17 17 C 1.54350 * 110.82485 * 263.26685 * 15 14 11 18 18 C 1.51377 * 105.17081 * 268.11035 * 17 15 14 19 19 C 1.38547 * 130.36458 * 162.84099 * 18 17 15 20 20 C 1.38125 * 120.33750 * 179.97438 * 19 18 17 21 21 C 1.38163 * 119.99730 * 359.97438 * 20 19 18 22 22 C 1.38605 * 119.87005 * 0.02562 * 21 20 19 23 23 O 1.35904 * 119.94770 * 179.97438 * 22 21 20 24 24 C 1.38132 * 109.76106 * 342.82078 * 18 17 15 25 25 C 1.51367 * 109.78332 * 359.97438 * 24 18 17 26 26 H 0.97005 * 119.99955 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 28 28 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 29 29 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 30 30 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 31 31 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 32 32 H 1.08999 * 110.30058 * 27.03363 * 17 15 14 33 33 H 1.08991 * 110.30438 * 149.18537 * 17 15 14 34 34 H 1.08003 * 119.83064 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.00369 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.06296 * 180.02562 * 21 20 19 37 37 H 0.96699 * 113.99945 * 270.02401 * 23 22 21 38 38 H 1.08990 * 110.30396 * 258.26483 * 25 24 18 39 39 H 1.09004 * 110.29869 * 136.10878 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6365 0.0022 12 8 6.3342 -2.1451 1.2389 13 8 6.3342 -2.1470 -1.2351 14 7 6.2488 -4.2401 0.0042 15 6 5.9178 -5.0832 -1.1472 16 1 5.8519 -4.4858 -2.0566 17 6 4.6043 -5.8559 -0.9020 18 6 5.0287 -7.1757 -0.2941 19 6 4.2941 -8.1181 0.4071 20 6 4.8999 -9.2678 0.8752 21 6 6.2451 -9.4827 0.6444 22 6 6.9841 -8.5427 -0.0567 23 8 8.3074 -8.7524 -0.2841 24 6 6.3739 -7.3859 -0.5268 25 6 6.9468 -6.2226 -1.3076 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8753 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8876 30 1 3.6579 -3.1498 0.8924 31 1 6.7136 -4.6202 0.7660 32 1 3.9668 -5.3076 -0.2084 33 1 4.0827 -6.0238 -1.8441 34 1 3.2423 -7.9530 0.5887 35 1 4.3221 -9.9990 1.4208 36 1 6.7198 -10.3815 1.0095 37 1 8.8856 -8.4022 0.4073 38 1 7.0556 -6.4895 -2.3587 39 1 7.9088 -5.9244 -0.8906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428402134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:46 Heat of formation + Delta-G solvation = -125.666353 kcal Electronic energy + Delta-G solvation = -23478.734698 eV Core-core repulsion = 19897.910968 eV Total energy + Delta-G solvation = -3580.823730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40485 -38.64768 -38.12793 -37.07071 -36.93897 -35.87620 -33.58196 -33.45716 -31.25012 -28.98968 -28.26759 -27.73699 -23.44257 -23.20614 -22.06683 -21.87719 -20.43739 -19.41469 -18.87158 -18.49271 -17.67091 -17.09701 -16.93362 -16.60218 -16.37778 -16.05338 -15.95150 -15.34135 -14.98025 -14.80313 -14.60855 -14.13152 -14.02100 -13.75194 -13.31817 -13.22298 -13.11019 -13.05607 -12.97490 -12.94498 -12.85028 -12.35014 -12.27785 -12.20101 -12.07560 -11.91934 -11.69029 -11.41963 -11.28508 -10.82289 -10.47866 -9.51875 -9.46108 -8.34475 -6.39665 -0.70642 0.32528 0.37510 1.33360 1.35696 1.45181 1.78160 2.31207 2.68499 2.76110 2.99934 3.21970 3.34596 3.36477 3.54908 3.88564 3.99913 4.04979 4.08632 4.21434 4.27405 4.38454 4.56159 4.58701 4.61406 4.77087 4.85149 4.91363 5.07743 5.10230 5.11492 5.19568 5.23284 5.45400 5.49820 5.52055 5.63889 5.93900 6.08158 6.19175 6.66758 6.87381 7.24769 8.80928 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.003549 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.563283 B = 7887.867692 C = 8732.005454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.013 3.987 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.524 4.524 8 H 0.052 0.948 9 C -0.018 4.018 10 C -0.589 4.589 11 S 2.622 3.378 12 O -0.995 6.995 13 O -0.988 6.988 14 N -1.097 6.097 15 C 0.139 3.861 16 H 0.119 0.881 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.130 4.130 20 C -0.104 4.104 21 C -0.156 4.156 22 C 0.108 3.892 23 O -0.509 6.509 24 C -0.137 4.137 25 C -0.071 4.071 26 H 0.269 0.731 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.423 0.577 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.406 0.594 38 H 0.105 0.895 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 -19.262 0.094 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.057 4.057 10 C -0.720 4.720 11 S 2.718 3.282 12 O -0.985 6.985 13 O -0.978 6.978 14 N -0.857 5.857 15 C 0.032 3.968 16 H 0.137 0.863 17 C -0.154 4.154 18 C -0.083 4.083 19 C -0.148 4.148 20 C -0.122 4.122 21 C -0.174 4.174 22 C 0.063 3.937 23 O -0.322 6.322 24 C -0.138 4.138 25 C -0.110 4.110 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.260 0.740 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.265 0.735 38 H 0.123 0.877 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.925 -18.619 -0.571 23.869 hybrid contribution -0.475 0.451 0.867 1.086 sum 14.450 -18.168 0.295 23.215 Atomic orbital electron populations 1.70008 1.07874 1.28295 1.51869 1.25850 0.95588 1.02941 0.94122 0.86053 0.79922 0.79576 0.79848 1.18519 1.20182 1.17323 1.21176 0.90229 0.93857 1.50995 0.93005 1.19379 0.97211 0.91232 0.97863 1.30372 1.22900 1.06075 1.12695 1.04446 0.77834 0.73017 0.72930 1.93523 1.79386 1.79191 1.46423 1.93524 1.78430 1.79231 1.46591 1.55350 1.73915 1.28296 1.28157 1.21665 0.94373 0.92244 0.88501 0.86293 1.21898 0.98130 0.92598 1.02749 1.20585 0.93821 0.96398 0.97539 1.20955 1.00831 0.94080 0.98886 1.21211 0.94436 0.97326 0.99249 1.21541 0.95253 1.00383 1.00268 1.18207 0.84675 0.92757 0.98019 1.84766 1.14022 1.82152 1.51240 1.20996 0.95603 0.95874 1.01289 1.21192 0.98597 0.90066 1.01115 0.92210 0.95149 0.94915 0.83717 0.84109 0.74048 0.89311 0.87117 0.84956 0.83349 0.83885 0.73545 0.87664 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.96 21.44 0.30 -56.80 16 2 C 0.01 0.76 5.47 84.65 0.46 1.23 16 3 Si 0.92 43.22 27.47 68.60 1.88 45.11 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 7 C -0.52 -28.76 9.66 25.60 0.25 -28.51 16 8 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 9 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 10 C -0.59 -19.64 5.15 71.98 0.37 -19.27 16 11 S 2.62 80.20 5.45 -56.49 -0.31 79.89 16 12 O -0.99 -36.58 18.08 -127.65 -2.31 -38.88 16 13 O -0.99 -35.23 17.43 -127.65 -2.22 -37.45 16 14 N -1.10 -23.40 5.45 -165.56 -0.90 -24.30 16 15 C 0.14 2.59 3.64 45.91 0.17 2.76 16 16 H 0.12 2.13 7.57 -2.39 -0.02 2.11 16 17 C -0.12 -2.09 6.37 30.52 0.19 -1.89 16 18 C -0.08 -1.58 6.14 -19.60 -0.12 -1.70 16 19 C -0.13 -2.30 10.04 22.32 0.22 -2.07 16 20 C -0.10 -1.61 10.04 22.22 0.22 -1.39 16 21 C -0.16 -2.49 9.98 22.34 0.22 -2.26 16 22 C 0.11 1.92 6.70 22.53 0.15 2.07 16 23 O -0.51 -7.88 13.45 -92.47 -1.24 -9.12 16 24 C -0.14 -2.53 6.11 -19.50 -0.12 -2.65 16 25 C -0.07 -1.17 6.35 30.52 0.19 -0.97 16 26 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 27 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 28 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 29 H 0.14 4.21 7.76 -2.39 -0.02 4.19 16 30 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 31 H 0.42 7.66 8.79 -96.74 -0.85 6.80 16 32 H 0.09 1.67 6.91 -2.39 -0.02 1.65 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.41 2.70 9.06 -74.06 -0.67 2.03 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.36 8.09 -2.38 -0.02 1.34 16 Total: -1.00 -76.10 339.57 -2.95 -79.05 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.49 Total: 17.85 kcal Atomic # 6 Polarization: -57.68 SS G_CDS: 2.34 Total: -55.34 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -0.60 Total: -81.09 kcal Atomic # 8 Polarization: -79.68 SS G_CDS: -5.78 Total: -85.46 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 80.20 SS G_CDS: -0.31 Total: 79.89 kcal Total: -76.10 -2.95 -79.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428402134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.619 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds