Wall clock time and date at job start Tue Mar 31 2020 09:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46754 * 273.79868 * 3 2 1 5 5 H 1.48499 * 109.47022 * 33.79863 * 3 2 1 6 6 H 1.48503 * 109.47440 * 153.80100 * 3 2 1 7 7 C 1.38945 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00102 * 341.97909 * 7 2 1 9 9 N 1.37101 * 120.00370 * 161.97544 * 7 2 1 10 10 C 1.34775 * 120.00009 * 320.11098 * 9 7 2 11 11 O 1.21299 * 119.99828 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00231 * 179.97438 * 10 9 7 13 13 C 1.53003 * 109.47192 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47192 * 179.97438 * 13 12 10 15 15 C 1.38262 * 119.97340 * 269.72638 * 14 13 12 16 16 C 1.38214 * 120.06003 * 179.76715 * 15 14 13 17 17 C 1.38326 * 120.00927 * 0.50766 * 16 15 14 18 18 Cl 1.73607 * 120.02165 * 179.72521 * 17 16 15 19 19 C 1.38547 * 119.95310 * 359.74581 * 17 16 15 20 20 F 1.35094 * 120.03116 * 179.97438 * 19 17 16 21 21 C 1.38194 * 119.97587 * 90.00199 * 14 13 12 22 22 C 1.46502 * 120.00096 * 140.10216 * 9 7 2 23 23 C 1.52995 * 117.49916 * 2.29256 * 22 9 7 24 24 C 1.52995 * 117.50264 * 293.66889 * 22 9 7 25 25 H 0.97002 * 119.99754 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 59.99841 * 12 10 9 27 27 H 1.08995 * 109.47090 * 299.99707 * 12 10 9 28 28 H 1.09001 * 109.46657 * 59.99647 * 13 12 10 29 29 H 1.09000 * 109.47000 * 300.00488 * 13 12 10 30 30 H 1.08004 * 119.97095 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.99557 * 180.25163 * 16 15 14 32 32 H 1.07998 * 120.00397 * 359.95204 * 21 14 13 33 33 H 1.09002 * 115.54739 * 147.99700 * 22 9 7 34 34 H 1.09000 * 117.50003 * 0.02562 * 23 22 9 35 35 H 1.08999 * 117.49785 * 145.01443 * 23 22 9 36 36 H 1.08996 * 117.49950 * 214.98019 * 24 22 9 37 37 H 1.09005 * 117.49769 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4153 2.0927 -1.3971 5 1 1.4881 2.6281 0.7788 6 1 3.5836 1.4184 0.6181 7 6 2.0089 -1.2033 0.0005 8 1 1.5086 -2.1155 0.2903 9 7 3.3294 -1.2326 -0.3668 10 6 3.7589 -0.4787 -1.3981 11 8 2.9770 0.2255 -2.0015 12 6 5.2105 -0.5105 -1.8016 13 6 5.4302 0.4277 -2.9901 14 6 6.8820 0.3964 -3.3932 15 6 7.7752 1.2876 -2.8279 16 6 9.1080 1.2573 -3.1927 17 6 9.5475 0.3418 -4.1319 18 17 11.2202 0.3082 -4.5956 19 6 8.6519 -0.5481 -4.7025 20 9 9.0794 -1.4425 -5.6202 21 6 7.3184 -0.5193 -4.3317 22 6 4.2737 -2.0834 0.3617 23 6 3.7151 -2.9556 1.4877 24 6 4.5645 -1.7276 1.8210 25 1 -0.4850 0.8401 0.0004 26 1 5.4867 -1.5261 -2.0849 27 1 5.8277 -0.1865 -0.9636 28 1 5.1538 1.4434 -2.7071 29 1 4.8130 0.1034 -3.8279 30 1 7.4318 2.0060 -2.0982 31 1 9.8055 1.9513 -2.7475 32 1 6.6193 -1.2127 -4.7754 33 1 5.0938 -2.4896 -0.2303 34 1 2.6449 -2.8968 1.6862 35 1 4.1676 -3.9360 1.6366 36 1 5.5758 -1.9000 2.1892 37 1 4.0536 -0.8601 2.2390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:04 Heat of formation + Delta-G solvation = -44.515633 kcal Electronic energy + Delta-G solvation = -22988.953082 eV Core-core repulsion = 19286.144300 eV Total energy + Delta-G solvation = -3702.808782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.02507 -41.08894 -40.23624 -38.11473 -37.65083 -35.18886 -34.55627 -33.38237 -31.78613 -30.70648 -27.48488 -25.26767 -24.00956 -23.37566 -22.92031 -22.27787 -20.86753 -18.99491 -18.47569 -17.84857 -17.78030 -17.40447 -17.23321 -16.82975 -16.22764 -15.94455 -15.30591 -15.22222 -14.92639 -14.72237 -14.64278 -14.27197 -14.13068 -13.93646 -13.54796 -13.30559 -13.09594 -12.87630 -12.46637 -12.30591 -12.17423 -12.13733 -12.05701 -11.93875 -11.86729 -11.56762 -11.18732 -10.68517 -10.38167 -10.00904 -9.63219 -9.38463 -8.38882 -6.14422 -0.12096 0.06260 0.96140 1.24016 1.35117 1.53951 1.96302 2.34994 2.46581 2.68820 2.97749 3.01000 3.25855 3.52129 3.66010 3.99080 4.05212 4.07753 4.15860 4.18469 4.25311 4.27841 4.37509 4.55223 4.68018 4.79086 4.86416 4.90274 5.00306 5.03192 5.06065 5.21203 5.26470 5.46757 5.47551 5.66980 5.71597 5.85697 6.76813 6.91486 7.37740 7.88867 8.68436 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.003422 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.617061 B = 8181.013966 C = 8597.517779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.034 3.966 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.320 1.320 6 H -0.263 1.263 7 C -0.340 4.340 8 H 0.068 0.932 9 N -0.453 5.453 10 C 0.438 3.562 11 O -0.587 6.587 12 C -0.115 4.115 13 C -0.063 4.063 14 C -0.040 4.040 15 C -0.110 4.110 16 C -0.072 4.072 17 C -0.088 4.088 18 Cl -0.056 7.056 19 C 0.096 3.904 20 F -0.137 7.137 21 C -0.139 4.139 22 C 0.046 3.954 23 C -0.174 4.174 24 C -0.183 4.183 25 H 0.271 0.729 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.490 -0.161 -4.034 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.169 4.169 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.251 1.251 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.173 5.173 10 C 0.231 3.769 11 O -0.474 6.474 12 C -0.154 4.154 13 C -0.101 4.101 14 C -0.041 4.041 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.115 4.115 18 Cl -0.027 7.027 19 C 0.076 3.924 20 F -0.116 7.116 21 C -0.158 4.158 22 C -0.059 4.059 23 C -0.211 4.211 24 C -0.221 4.221 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.110 0.181 -4.403 23.526 hybrid contribution -0.501 0.437 -0.188 0.691 sum 22.608 0.619 -4.591 23.078 Atomic orbital electron populations 1.69835 1.08275 1.28615 1.48911 1.26053 0.95531 1.02598 0.92720 0.85309 0.78402 0.78718 0.76886 1.19360 1.25120 1.18744 1.18692 0.85341 0.94502 1.48125 0.91454 1.43385 1.06976 1.39986 1.26973 1.21391 0.92211 0.82845 0.80424 1.90486 1.58194 1.43267 1.55441 1.21569 0.91256 1.02935 0.99686 1.20293 0.91138 1.00678 0.98013 1.19779 0.95586 0.94228 0.94474 1.21395 0.91903 0.99214 1.00279 1.21218 0.96631 0.96708 0.94504 1.21158 0.86258 1.01281 1.02828 1.98382 1.14617 1.98068 1.91594 1.17520 0.92742 0.90550 0.91587 1.91512 1.90370 1.65781 1.63892 1.21147 0.93367 1.01469 0.99851 1.22251 0.95964 0.98873 0.88768 1.23145 0.99937 0.96153 1.01881 1.23310 1.01828 0.98763 0.98208 0.92021 0.86923 0.87383 0.90900 0.90720 0.82521 0.81466 0.83040 0.82778 0.90963 0.85442 0.84899 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.15 13.96 21.66 0.30 -57.85 16 2 C 0.03 2.03 4.90 84.93 0.42 2.44 16 3 Si 0.98 50.69 24.53 68.60 1.68 52.37 16 4 H -0.27 -14.43 6.10 99.48 0.61 -13.83 16 5 H -0.32 -16.55 7.11 99.48 0.71 -15.84 16 6 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.34 -19.02 8.77 84.04 0.74 -18.29 16 8 H 0.07 4.06 6.96 -2.91 -0.02 4.04 16 9 N -0.45 -20.35 2.56 -613.14 -1.57 -21.91 16 10 C 0.44 18.85 5.87 87.66 0.51 19.36 16 11 O -0.59 -30.75 10.84 -3.09 -0.03 -30.79 16 12 C -0.11 -3.21 4.31 29.85 0.13 -3.08 16 13 C -0.06 -1.66 4.63 29.85 0.14 -1.52 16 14 C -0.04 -0.81 5.13 -19.87 -0.10 -0.91 16 15 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 16 C -0.07 -1.09 9.83 22.29 0.22 -0.87 16 17 C -0.09 -1.64 6.33 22.36 0.14 -1.50 16 18 Cl -0.06 -1.00 28.62 -2.72 -0.08 -1.08 16 19 C 0.10 2.00 7.28 22.39 0.16 2.17 16 20 F -0.14 -3.14 16.84 44.97 0.76 -2.38 16 21 C -0.14 -2.79 9.68 22.31 0.22 -2.58 16 22 C 0.05 1.48 5.85 44.99 0.26 1.74 16 23 C -0.17 -5.36 9.80 30.59 0.30 -5.06 16 24 C -0.18 -5.31 10.37 30.59 0.32 -4.99 16 25 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 26 H 0.11 2.54 7.57 -2.39 -0.02 2.53 16 27 H 0.11 2.54 8.11 -2.39 -0.02 2.52 16 28 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 29 H 0.07 2.13 8.04 -2.39 -0.02 2.11 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.16 3.64 6.99 -2.39 -0.02 3.62 16 34 H 0.07 2.82 6.49 -2.39 -0.02 2.80 16 35 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -73.95 329.20 5.73 -68.22 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.99 Total: 8.11 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.67 Total: -14.69 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.27 Total: -79.77 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.03 Total: -30.79 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.76 Total: -2.38 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.68 Total: 52.37 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -73.95 5.73 -68.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.705 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds